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authorMikle Kolyada <zlogene@gentoo.org>2015-07-01 18:30:26 +0000
committerMikle Kolyada <zlogene@gentoo.org>2015-07-01 18:30:26 +0000
commit8e2155a1eeffe60e92fc581c60458344edb0de99 (patch)
tree1814d0f1f4ad566688402634939ebd83f1cccaf8 /sci-biology
parentCombine sed calls. Fix gtk-doc install path (and incorrect nonfatal use), bug... (diff)
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x86 stable wrt bug #525630
Package-Manager: portage-2.2.18/cvs/Linux x86_64 Manifest-Sign-Key: 0xC42EB5D6
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/samtools/ChangeLog5
-rw-r--r--sci-biology/samtools/Manifest28
-rw-r--r--sci-biology/samtools/samtools-1.0-r1.ebuild6
3 files changed, 16 insertions, 23 deletions
diff --git a/sci-biology/samtools/ChangeLog b/sci-biology/samtools/ChangeLog
index b2f808406c92..54226395cbb6 100644
--- a/sci-biology/samtools/ChangeLog
+++ b/sci-biology/samtools/ChangeLog
@@ -1,6 +1,9 @@
# ChangeLog for sci-biology/samtools
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/samtools/ChangeLog,v 1.25 2015/04/08 18:20:42 mgorny Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/samtools/ChangeLog,v 1.26 2015/07/01 18:30:25 zlogene Exp $
+
+ 01 Jul 2015; Mikle Kolyada <zlogene@gentoo.org> samtools-1.0-r1.ebuild:
+ x86 stable wrt bug #525630
08 Apr 2015; Michał Górny <mgorny@gentoo.org> samtools-0.1.19-r2.ebuild:
Drop old Python implementations
diff --git a/sci-biology/samtools/Manifest b/sci-biology/samtools/Manifest
index 54bcb8cfcd97..71cf674e1444 100644
--- a/sci-biology/samtools/Manifest
+++ b/sci-biology/samtools/Manifest
@@ -1,5 +1,5 @@
-----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA512
+Hash: SHA256
AUX samtools-0.1.19-buildsystem.patch 6227 SHA256 44c6e4df3ceb36e539716350ef10e0f4e348d524c5dfdb96ad7c9ccbed9570d0 SHA512 dd41a0ab20ad216273f38b42e6abafd70378bcf966403379e73d08c93e92f04ee79dae07baf7f626b30d57deea29d56a729928c18c5d012d950cfe10912adf3d WHIRLPOOL 9ba69f11b8071fe1c9a3269a482e1de0c6563a0a94b96bcef97a1442a6e4d594aea55b4e1c75381b6ed792e7e3e3809da80c9b8a22ec74af63c14315a51e9771
AUX samtools-1.0-buildsystem.patch 1672 SHA256 fe82984a2475ce4666bd386bb6f1ab9aff4e6402dc02e671171f41ad082345c1 SHA512 b75a9c6a57fa5f4c4dc9eda529eb500f1828c6e0910922ac34869c0972661a4fa51a65b83a153905a090b4f67e0bb7a9316ecc33b04a09a46c74d2bd67c84cf6 WHIRLPOOL eb72243b5e2376df4c417e0b171eb3f71c11ca842014fc72f75463a4bebde11771484049a12650e9169f1c4ba390699af99ebf63d6459b4cc673195b273bedcc
@@ -12,28 +12,18 @@ DIST samtools-1.1.tar.bz2 4495373 SHA256 c24d26c303153d72b5bf3cc11f72c6c375a4ca1
DIST samtools-1.2.tar.bz2 4547126 SHA256 420e7a4a107fe37619b9d300b6379452eb8eb04a4a9b65c3ec69de82ccc26daa SHA512 4849c3274e732267516b63799f5430c5415d575d46eddf6b704dac51053281094b03b90dd9f5367bcd14c22fb0fb1bd6a412f7d4225f7be5f5385437c5d2101d WHIRLPOOL 273185764a807365a20c381769f987ef02d14ae8e20a3a7fd5af4344769c5fab68d7155523e8c0c8c3cc86092898c2c8454cce8f1560d415bc2b41549cdf04f4
EBUILD samtools-0.1.12.ebuild 827 SHA256 7f8dec32073313ec5a0a7801bcaf7675d74f4eefb2478b19615b22f1bd7e3708 SHA512 b67feeb1909327b6ab19fdb3167e602ab01bd075685bded200109b5def4ad80353f39c77dd8c8e1de1b6a43482acc0b85626951503f42f6dbf416bdbbf740851 WHIRLPOOL 58c4f8c129b41cf068fc08a225ebdd6fc6724efb0ba50eeb44ee0ec586d0634fd3a1fb24c89ee484bfc7cf5affad35c217192bf8eea4d548b220f8789329533d
EBUILD samtools-0.1.19-r2.ebuild 1470 SHA256 f03303201d0fe3e74b48a690b748c52d36b15dd99fcedcb8cf69ba2663b09f75 SHA512 fb7d60bf0bb2288f07fd7b1ac14f9ffb670dfc81d74359b825dd920a611985d7276d7298b966d095667ce9b782b967face992ceea74f3b60b690d4524560a9e9 WHIRLPOOL e138aa38fc7614d0ba4d499fc875302e080bd7fb704032a6ecd9edb67f694c404550db415c0c593edcf9839a28d05299744e0f140ecf88103a5e4c5fa2ba2a58
-EBUILD samtools-1.0-r1.ebuild 1554 SHA256 f63e30721951a432240284ce6d451fd1d497ea9350f3137321e4e0d7c0a433ba SHA512 240ae645a9e7591b3f32efb31d96810eef7f507a080e9cb1296494c7309416029c63f3e239238e3621f69f42a904de281f446cdd7d368683df790f6535025219 WHIRLPOOL 18b6b4073d4b5232dd0e1991b26026800f681c5aa4f5d374a1a288506555b5c756a48f58874bb14ba88b48996d413f24622c455edb344c7c6fa4dc928307af0e
+EBUILD samtools-1.0-r1.ebuild 1556 SHA256 c71c4befaf49be4887822dab60dd7217c719dd416be69cf3a0c11178c355b906 SHA512 5e01e8ddcfd90a3f9cdc294ad675564b070f56da260331b305b78f0ebca5a41408f70c3114e2a20944405c1998f598a3c687b9ec1b0d3fc3de9161bee784d0b6 WHIRLPOOL 3b0e8979b0e1fa9175a3e88c9dce13c1ab7794fe88d2b6fc96d85ac18953a4db3cdbd0ad7e124095409f8d6372b43b1c43282c015df0519cea52f6136ddde4ae
EBUILD samtools-1.0.ebuild 1488 SHA256 f1b8623d24fc3ce95b39ba1f66a334d9a0df1dd8880227fbb50a32cf96c800d5 SHA512 84b937c3b5143a84a8d9c2062e4e3b91b8a4fe5a50be379ce0dfecba19fc1735a90b1f7690762c7a33aede06229ff229e84a3c31a704ae56cb2241be33a88002 WHIRLPOOL ccc11832e93be31003f41fcd6789537f4c1cf16e0972f0d6cfcd6ef0dc4ee18e4d34907c8f5c32a84137f9bcc5bde2f5d7ea3e61d39e837b4bf0f2319930bb11
EBUILD samtools-1.1.ebuild 1780 SHA256 7939d37f2dfea1a0f190a57bc02374a8787d4e6a21325677b6c175bc42e19561 SHA512 14be9b8002b38f2fe6f7f0c01629ada05539cba20476436f2de691cb8a73f8751e66045e81dc5aa01cb1fe7d2971cb660e6cc66c9191eba71bc3d87741b3a7b5 WHIRLPOOL 63e66aa4a04932f3cb5269d45d2d746ad712a9302dd1efb0c4a39cdaaf44e6c93a088429ad1b86533928897ed5f12a81a72a1d011123baacf29049850e109de1
EBUILD samtools-1.2.ebuild 1804 SHA256 1edae996713074dea4dba5f3fe1b981fd1f5a46c9faaca5aad77403458840949 SHA512 0e7967658953f4650740c66cbc3ce4ca3505ed5a4f0ecfda4da9eb6d2d440c9ce1058b4d4d421dba33af3902fadfe86cb90b2f2691d4c5b5ed29e97721eb6a2d WHIRLPOOL 95b8965d68f7bb89f49c13599d35c9e688209106a89aff113198270ebb141f9ee12806f37fc52ee37a73f1710715a891cfd24a06b6f9ebe8f0bf637d70aeaf82
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MISC metadata.xml 248 SHA256 8b32cbb413048ce089112a925df83b38890f033b5fb55265531779e2904e54bc SHA512 ff87b7157f1cf277fb0d2f38cb8ece1045ac83e3e6bdad14e945e8c6cadc849383b6908feed20dab554bd44b53c8c73bebfc1f0c8925517753874249849b4d2e WHIRLPOOL bd266bc613c788a5c293101c11eb8a0719b183acb5c2618f22921b685a32e1ec2afa38c6d5a20c15da03af597712d0035506769dfe410daaeb9730f280f18ffd
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diff --git a/sci-biology/samtools/samtools-1.0-r1.ebuild b/sci-biology/samtools/samtools-1.0-r1.ebuild
index 7bf3fd6c6558..1cb1559a16de 100644
--- a/sci-biology/samtools/samtools-1.0-r1.ebuild
+++ b/sci-biology/samtools/samtools-1.0-r1.ebuild
@@ -1,6 +1,6 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/samtools/samtools-1.0-r1.ebuild,v 1.1 2014/09/25 15:20:53 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/samtools/samtools-1.0-r1.ebuild,v 1.2 2015/07/01 18:30:25 zlogene Exp $
EAPI=5
@@ -14,7 +14,7 @@ SRC_URI="mirror://sourceforge/${PN}/${P}.tar.bz2"
LICENSE="MIT"
SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos"
+KEYWORDS="~amd64 x86 ~amd64-linux ~x86-linux ~x64-macos"
IUSE="examples"
REQUIRED_USE="${PYTHON_REQUIRED_USE}"