Drop old; bump EAPI

Package-Manager: portage-2.2.18/cvs/Linux x86_64
Manifest-Sign-Key: 0xB9D4F231BD1558AB!

4 files changed, 28 insertions, 107 deletions

diff --git a/sci-biology/ucsc-genome-browser/ChangeLog b/sci-biology/ucsc-genome-browser/ChangeLog
index e33013d5a221..e5a7e1a1fdbf 100644
--- a/sci-biology/ucsc-genome-browser/ChangeLog
+++ b/sci-biology/ucsc-genome-browser/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-biology/ucsc-genome-browser
-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/ucsc-genome-browser/ChangeLog,v 1.6 2013/03/12 12:11:29 jlec Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/ucsc-genome-browser/ChangeLog,v 1.7 2015/04/17 06:21:51 jlec Exp $
+
+  17 Apr 2015; Justin Lecher <jlec@gentoo.org> -ucsc-genome-browser-223.ebuild,
+  ucsc-genome-browser-260.ebuild:
+  Drop old; bump EAPI
 
   12 Mar 2013; Justin Lecher <jlec@gentoo.org> metadata.xml:
   Drop Andrey as maintainer so that bugs get assigned to sci-biology directly
@@ -36,4 +40,3 @@
 
   23 Oct 2009; Andrey Kislyuk <weaver@gentoo.org> ChangeLog:
   New package, bug 155780. Ebuild written by me and dawe <daweonline@gmail.com>
-
diff --git a/sci-biology/ucsc-genome-browser/Manifest b/sci-biology/ucsc-genome-browser/Manifest
index fbafaaeef451..6f63a9a2da0a 100644
--- a/sci-biology/ucsc-genome-browser/Manifest
+++ b/sci-biology/ucsc-genome-browser/Manifest
@@ -1,16 +1,26 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA256
+Hash: SHA512
 
-DIST jksrc.v223.zip 121052301 SHA256 07d1a638469e7b278aef4e7bda9d8d3c0bb200003f9e866c4bef5d52f7ad75c9
 DIST jksrc.v260.zip 59090224 SHA256 ec28dad706f69a02f8d8fb56b9e3010f5e23b7880d717e58d9bb8d1e258fe7d1 SHA512 48aa964ab3ae456ab7e7ddc5d73b91774bd4892f21f1498578a5de38d3a07e4684778ddb1ac1ae389d5bbb3586f9b8506ca3697acca1f6777b85d343cf5d9485 WHIRLPOOL 669b0f342a97f84164b32707a3b2bb51f64219168beceb8f9d46211749351b2c65b21ffe830f82620e7112a332e88ca271d4327739d8f93afbe14e399e45e248
-EBUILD ucsc-genome-browser-223.ebuild 2848 SHA256 2ee89fd5991244142b46bbe0720fe2166308443769f451642f7e9036d9983a2e SHA512 64f1b5f0fcce014f1318051f0a6e98aec772cc7465ba157976fd4f3df2356a4bef9b9a0f8e3c008085e7fade89a85a4b9c60d54f6ec0ebc34b76a7d7cac3f0a0 WHIRLPOOL 70f7d617b3cf6b102c21830e62a66cf461e7a467f5ab6c0dbcbb9f20554119dfa6055d74c56ac8051530d7fc8b6dd51edb5e6349f23c613488594e9303615e62
-EBUILD ucsc-genome-browser-260.ebuild 3055 SHA256 8c00967843adf0b4251750c5be0b88a76633169b7ff90a9d4d917edd771b77d0 SHA512 8383df56b08c25f1195216eb74cf9a02d03a2b1103c11f6be46e6a9fb2424b699747780498f81bae96a3fad94b9e5c66542d5a4397c3437b6dffb52c68fae901 WHIRLPOOL 110c7746e1db853cf5b7b30223b3693d0a6330ab6b2861a8dc87a0eacdfc1d1326d38bccea62175846d8405ba37d06ec872dc9c2070e40bf64ac7aa1f7e2fe04
-MISC ChangeLog 1407 SHA256 a423dea868a786a1bf3ce0f793e38fd010bcaa5855d833f2eb09066746cb882a SHA512 463f838fc560602ae31f20ddcb4d6e085c805b64adca7584ed1cb0a67bc0745a12fe005cdb2b15e8fc1080ff4a6ff19b79703e022d57b26316346cf5644acb85 WHIRLPOOL 04fe32a74579a256266c39b40a364fb3529492715757254f0c9fac3fcee331953379d9fde873ef5cc7c9a0413a5ef857cce7a0fd7ade0156e5e36adc838d3e04
+EBUILD ucsc-genome-browser-260.ebuild 3055 SHA256 e67e44a07bea0efc0a5154d20448e22292680c2171cf3ba57ca2b42bb33ba39d SHA512 fcf4d50e1b33eac622a8b2f3121427cb2a0083bd2fca48d9ae648119612d186ae60c2fe9f46ed24d6a660164cc92de35d2f9a168cf613b8b82b40ab2a1b03ecc WHIRLPOOL bf9a15cff9bd313bd72c2a3c1c5d32e4f807c88acd2798870b57f4e959084a9ce79b7deb7d88b6b6eda96c38a35f5eb230d36be087f3e88b2d929335c66ea0f3
+MISC ChangeLog 1543 SHA256 e4528cb56770a7989b4c681b2ca915691d1c4efde053d96bb152ed077ec5bbf8 SHA512 e4f17c85b1df30b7277271edc19409cd9062a64704023ff975ef51321428e3bdae035f1f5f487ebadfa1eef4fc6e3cae2aa788d57b68c27875e88465e7f1c6fc WHIRLPOOL fd8bceba956dd2506377ba6748f43a4fbbb753b35e7bd2397b0955a840b32b20a643d5f4498d2f05acc71094e51523f29f08c3b6e129eb9712fc7ac1791014eb
 MISC metadata.xml 334 SHA256 c6e678d138e9dae13d560ee2c8f3653eec218bc0fe291599fad77cb7301253fe SHA512 56842dd7004f9d15c3bc4be924dcf1218877ac83338c39c2270234c8afd8dc2ec99658de99eb7cdf57f444838324d156149c8ef4e479d3f42bd6ba1304ce94b9 WHIRLPOOL 0ca16d8339b04f382a961435d886a8e68d2bf179e9add2668e3fe47067c71ccbc9a4406c3e9091056067eaaeaafd06efc4b24dfc9f5b630829d96087e3f5a633
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-Version: GnuPG v2.0.19 (GNU/Linux)
+Version: GnuPG v2.1
 
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diff --git a/sci-biology/ucsc-genome-browser/ucsc-genome-browser-223.ebuild b/sci-biology/ucsc-genome-browser/ucsc-genome-browser-223.ebuild
deleted file mode 100644
index 2c7163b33be4..000000000000
--- a/sci-biology/ucsc-genome-browser/ucsc-genome-browser-223.ebuild
+++ /dev/null
@@ -1,92 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/ucsc-genome-browser/ucsc-genome-browser-223.ebuild,v 1.2 2010/02/24 21:43:32 weaver Exp $
-
-EAPI="2"
-
-inherit toolchain-funcs flag-o-matic webapp
-
-DESCRIPTION="The UCSC genome browser suite, also known as Jim Kent's library and GoldenPath"
-HOMEPAGE="http://genome.ucsc.edu"
-SRC_URI="http://hgdownload.cse.ucsc.edu/admin/jksrc.v${PV}.zip"
-
-LICENSE="blat"
-SLOT="0"
-WEBAPP_MANUAL_SLOT="yes"
-KEYWORDS="~amd64 ~x86"
-IUSE="+mysql +server"
-
-DEPEND="app-arch/unzip
-	!<sci-biology/ucsc-genome-browser-223
-	mysql? ( virtual/mysql )
-	server? ( virtual/httpd-cgi )" # TODO: test with other webservers
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}/kent"
-
-src_prepare() {
-	if use server && ! use mysql; then die "USE flag server requires USE flag mysql"; fi
-	use server && webapp_src_preinst
-	sed -i -e 's/-Werror//' \
-		-e "s/CC=gcc/CC=$(tc-getCC) ${CFLAGS}/" \
-		src/inc/common.mk || die
-	find -name makefile -or -name cgi_build_rules.mk \
-		| xargs sed -i -e 's/-${USER}//g' -e 's/-$(USER)//g' || die
-}
-
-src_compile() {
-	export MACHTYPE=${MACHTYPE/-*/} \
-		BINDIR="${WORKDIR}/destdir/opt/${PN}/bin" \
-		SCRIPTS="${WORKDIR}/destdir/opt/${PN}/cluster/scripts" \
-		ENCODE_PIPELINE_BIN="${WORKDIR}/destdir/opt/${PN}/cluster/data/encode/pipeline/bin" \
-		PATH="${BINDIR}:${PATH}" \
-		STRIP="echo 'skipping strip' "
-
-	export MYSQLLIBS="none" MYSQLINC="none" DOCUMENTROOT="none" CGI_BIN="none"
-
-	use mysql && export MYSQLLIBS="${ROOT}usr/lib/mysql/libmysqlclient.a -lz -lssl" \
-		MYSQLINC="${ROOT}usr/include/mysql"
-
-	use server && export DOCUMENTROOT="${WORKDIR}/destdir/${MY_HTDOCSDIR}" \
-		CGI_BIN="${WORKDIR}/destdir/${MY_HTDOCSDIR}/cgi-bin"
-
-	mkdir -p "$BINDIR" "$SCRIPTS" "$ENCODE_PIPELINE_BIN" || die
-	use server && mkdir -p "$CGI_BIN" "$DOCUMENTROOT"
-
-	emake -C src clean || die
-	emake -C src/lib || die
-	emake -C src/jkOwnLib || die
-	emake -C src/utils/stringify || die
-	emake -C src blatSuite || die
-	if use mysql; then
-		emake -j1 -C src/hg utils || die
-		emake -j1 -C src utils || die
-		emake -C src libs userApps || die
-		if use server; then
-			emake -j1 -C src/hg || die
-			emake -j1 -C src || die
-		fi
-	fi
-}
-
-src_install() {
-	use server && webapp_src_preinst
-	cp -a "${WORKDIR}"/destdir/* "${D}" || die
-	dolib.a src/lib/${MACHTYPE/-*/}/*.a || die
-	echo "PATH=/opt/${PN}/bin" > "${S}/99${PN}"
-	doenvd "${S}/99${PN}"
-
-	use server && webapp_postinst_txt en src/product/README.QuickStart
-	use server && webapp_src_install
-
-	insinto "/usr/include/${PN}"
-	doins src/inc/*.h
-	insinto "/usr/share/${PN}"
-	doins -r src/product
-	keepdir "/usr/share/doc/${PF}"
-	find -name 'README*' -or -name '*.doc' | grep -v test | cpio -padv "${D}/usr/share/doc/${PF}" || die
-}
-
-pkg_postinst() {
-	use server && webapp_pkg_postinst
-}
diff --git a/sci-biology/ucsc-genome-browser/ucsc-genome-browser-260.ebuild b/sci-biology/ucsc-genome-browser/ucsc-genome-browser-260.ebuild
index 06a796499aee..95b3d7e14766 100644
--- a/sci-biology/ucsc-genome-browser/ucsc-genome-browser-260.ebuild
+++ b/sci-biology/ucsc-genome-browser/ucsc-genome-browser-260.ebuild
@@ -1,8 +1,8 @@
-# Copyright 1999-2011 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/ucsc-genome-browser/ucsc-genome-browser-260.ebuild,v 1.1 2011/12/27 09:39:04 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/ucsc-genome-browser/ucsc-genome-browser-260.ebuild,v 1.2 2015/04/17 06:21:51 jlec Exp $
 
-EAPI=4
+EAPI=5
 
 inherit toolchain-funcs flag-o-matic webapp