diff options
| author |   Justin Lecher <jlec@gentoo.org> | 2012-12-12 18:27:38 +0000 |
|---|---|---|
| committer | Justin Lecher <jlec@gentoo.org> | 2012-12-12 18:27:38 +0000 |
| commit | 70c46391f32783413b1fe9ffe593536442b4762a (patch) | |
| tree | e5dc02a81d474a954e63338c42515d2542025e01 /sci-biology | |
| parent | Add ~ppc, wrt bug #413125 (diff) | |
| download | historical-70c46391f32783413b1fe9ffe593536442b4762a.tar.gz historical-70c46391f32783413b1fe9ffe593536442b4762a.tar.bz2 historical-70c46391f32783413b1fe9ffe593536442b4762a.zip | |
sci-biology/primer3: Fix buildsystem patch to respect RANLIB, #447026
Package-Manager: portage-2.2.0_alpha147/cvs/Linux x86_64
Manifest-Sign-Key: 0x8009D6F070EB7916
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/primer3/ChangeLog | 6 | ||||
| -rw-r--r-- | sci-biology/primer3/Manifest | 12 | ||||
| -rw-r--r-- | sci-biology/primer3/files/primer3-2.3.4-buildsystem.patch | 15 |
3 files changed, 23 insertions, 10 deletions
diff --git a/sci-biology/primer3/ChangeLog b/sci-biology/primer3/ChangeLog index 8448af12eed4..808daff611cc 100644 --- a/sci-biology/primer3/ChangeLog +++ b/sci-biology/primer3/ChangeLog @@ -1,6 +1,10 @@ # ChangeLog for sci-biology/primer3 # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/primer3/ChangeLog,v 1.34 2012/12/12 13:10:00 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/primer3/ChangeLog,v 1.35 2012/12/12 18:27:37 jlec Exp $ + + 12 Dec 2012; Justin Lecher <jlec@gentoo.org> + files/primer3-2.3.4-buildsystem.patch: + Fix buildsystem patch to respect RANLIB, #447026 12 Dec 2012; Justin Lecher <jlec@gentoo.org> primer3-2.3.1.ebuild, primer3-2.3.4.ebuild, metadata.xml: diff --git a/sci-biology/primer3/Manifest b/sci-biology/primer3/Manifest index 172fbc308462..7587a47e9107 100644 --- a/sci-biology/primer3/Manifest +++ b/sci-biology/primer3/Manifest @@ -1,8 +1,8 @@ -----BEGIN PGP SIGNED MESSAGE----- -Hash: SHA256 +Hash: SHA512 AUX primer3-1.1.4-ldflags.patch 882 SHA256 10ef0f1491df83c60f5919fcc461a0864e12a0303d8242f4e3ea1c2f8963c436 SHA512 8e9d48b8c504db96a3e632189527e4bab54765686d153560d415c2ef0d7bc5f8d0e6ba350fd571b6d1c3386ef745be108f866b52ceebab0f0412155bf079a306 WHIRLPOOL b6fb36622c44d078052e9a09f4389d6e6cdb63d1a7bd45dc6b016767b369954a8040c6ac01bb8131520034863edc9ac246b94fd64265118890224e7dc73227f6 -AUX primer3-2.3.4-buildsystem.patch 5086 SHA256 69753406bccdbc27723ae2e579dd0e301334cfa1fa9a755c6688afd13a20121d SHA512 02dbd00d51626c2dd826dd42fad138da58b2b3d0bfd06c31dafa1b64697c86999a4165d1a866c15f84699fa13296102e21cce39ea3d00e28a7007d69ba40f96f WHIRLPOOL 7d1038388398dff811ff14094b952610e01c27816fa012d1d561ee43c2e63632582348c7d190c9dfc986f7092f3dc7f17747b1036233e07783b43ba5f9f92daa +AUX primer3-2.3.4-buildsystem.patch 5460 SHA256 13fa4df0026faa97b574e3de3a99183e66ab18eec883db92e9f234acafe8b3b8 SHA512 52f539f52c92e5e21c3166da62813c6fa9f90fd9e0ca87d9ab67658496e13f4b5ce5c53770802cb1cdd21044244e21f09b0de2ce3c6d3db0182b3d9cbf64a037 WHIRLPOOL f09d952479f929d5e17abc3bb3a0313eae9d5811c3da14beb4d7111d17035f4077798b13f7b047ba7decd2b841c731373fb477f71a9b82f64906bbacf0118e2a DIST primer3-2.2.3.tar.gz 2284282 SHA256 2e68d638119bfcac12571da351cf261e28a3dd4b32c89074ce17065931a98774 DIST primer3-2.3.0.tar.gz 2596929 SHA256 6b6721f8ae3b45dc8ac81d6a230012f79d56f840274e88dc5001ec718625e834 SHA512 56c67e19749d55e10bf2eb5728de0a8d72d4b016b477928e737b3485e583e3060faca2a13f0ad46f75e60d591e72dd0970dfef9acd65151463270a731a4e53f8 WHIRLPOOL b455046c268cba17b7d79730d39e350a6e85ce0caa649e2d585cac3905c9d47480cf3d9c6158bc7556c2a8cad2feaed767d03f6b099baa07f7069c105c06546f DIST primer3-2.3.1.tar.gz 2539917 SHA256 34a27e5c442e41fca1202be4fbe90f97c791fa93e2235e28b625574ccf90c137 SHA512 ff035fc1bc96ff4ce1fa29d867f01fc2df62e3bcff23de62c753cef3a92a7209ef8fda27dc19cdf0173aa98c5b2fa36ad0b58cca9a7d225be26f3ebc970b08f8 WHIRLPOOL c2801ea96733729121a70ef77a710d1e0668ecdc5243ef70b4073930b421b708bf771805eec8d26d39af12f1d5b57dbbaf0384d565e887d26b916149dd5e23d2 @@ -11,12 +11,12 @@ EBUILD primer3-2.2.3.ebuild 1335 SHA256 ed8de7c2dc7e7250de0e73f8af2298e6d8b38515 EBUILD primer3-2.3.0.ebuild 1231 SHA256 dec94ce5572c2292dff38d7977c960553c381572d77cbd0fe6967e837f0eaab5 SHA512 01115f231f73058fa22b00e994736ca67b84fd992f7a4a876401bcf2d3b01b5cd844e67cf2082dfba4d1241dce76328ee767b6152b862241ce0e954cfc607846 WHIRLPOOL ccaec6f4314601d21a4fda99349bb0f3e088cac77a7b9ad0d9a63a3c6b0c6c7c60200630b4682df2b66b9983569aaa5d0846282dbfcfe8f2eab5c86e1e5c3efb EBUILD primer3-2.3.1.ebuild 1145 SHA256 2ad27b842299f1bc97ca8a0a09ad72f336403ca70c28e0115d3d186d5961c786 SHA512 1f398bcedf28494b85b829b24c6c6960634bc112d19bdea88125a91aa9ea3fe8ae0f4fda331901d7da112792077690f9d5d9eca85917b500bded1c7eb3a0cb77 WHIRLPOOL fb027bd48ce3d688329c4da2d9a8b749944f7981d87422c163e92f74650a98e3ff8aff4b85c021f13655028759bf761bd54cfa6b636d5f27d589fa4a92fbaa03 EBUILD primer3-2.3.4.ebuild 1138 SHA256 7b6ce1f2801634df77987ed5ebbb7b5f4e8dc5d32dca1adb81fbb9ebe5ee6fd2 SHA512 7ca9fd25169c521229fb41f422e367ac66ccaa6bc383fb21ac2dd3569607a45cb262f52d8024a2563d72f5994d37f542ce2d0ebc1772c3d1c1294f4ee3278c34 WHIRLPOOL d53d8073181fd3b9f6e88f0df6de5fbd3fc98688165300fb833dc2e6712035e80d539318ba52e77a7abd1e9beeedd73b3fb36d9181336ab1d89ba9d21b285991 -MISC ChangeLog 5329 SHA256 b4934f9dde4752095efb2fec065792b6c1b6218cf5b2faf04b08eb187cf2dfee SHA512 45dcfb2a07236643bf5de9f7909a52be622f30a34e058810a61424c10aff930fd57e0026c9aff73c5500736ae64aa84a93c5232db8d914498ab42597cf759450 WHIRLPOOL b213ba9095f5a18a20b06e2983bbbdf3c165860541ebd0b0ea8370292938203d01f2a7a20411ee6aaeea4c638e660d3476cf61351a7fd21afaeb22323f176497 +MISC ChangeLog 5469 SHA256 77be021f8a72cbc233c8b4e825d8bd25a1e1be8ca6c013a4cdde477f27129e65 SHA512 7b0f3595c51596261db576136b356158802b066d9a759320532e4cbc08634e0d8ede3d2afaa3033ff5b5c68e9ae5e2147b15ef82734ab6fe49063c7f5e8f1f2a WHIRLPOOL 8bf70b865d6455a071cc3777938c9b68ccbbdc01849b1246d396f84f2b2c4c6226a4426e99b0591ddf34e0c495cccdfd0db4a94fc15d292b49fbebfe2df58e83 MISC metadata.xml 626 SHA256 7f92fdb9d901cce63f02bce075366ea0fcd34c54809c6cff6a5074671e528c97 SHA512 cd1df947da6ce9bfc424658af5149a431f9f049938d74b0ff83e5fe585829006dc4c4707833e7b4308242fed6e92b3c83263754aadadb2e22c76cf964c32fc25 WHIRLPOOL 5a8f088e9fb2a29b73cc6ad8da1808314f38f04e611b96a76de1054c290fbb662177b757c8a198885fa03c0f881376cebe95906606279193d2852f443176ef04 -----BEGIN PGP SIGNATURE----- Version: GnuPG v2.0.19 (GNU/Linux) -iEYEAREIAAYFAlDIgikACgkQgAnW8HDreRZJcgCaAt1S4KR00skQ/rF53yULytHu -Rf8AoLbI5XpaYhwxHjS8aTjLzE7i8nAh -=IMmA +iEYEAREKAAYFAlDIzJ4ACgkQgAnW8HDreRZK1gCgggTwvQEsBvCczsywdc58E0oP +0cgAnjH8HTv7n4PdaIlnu76vMP00VEEG +=7465 -----END PGP SIGNATURE----- diff --git a/sci-biology/primer3/files/primer3-2.3.4-buildsystem.patch b/sci-biology/primer3/files/primer3-2.3.4-buildsystem.patch index 51ab913b48cf..cf47b35af502 100644 --- a/sci-biology/primer3/files/primer3-2.3.4-buildsystem.patch +++ b/sci-biology/primer3/files/primer3-2.3.4-buildsystem.patch @@ -1,8 +1,8 @@ - src/Makefile | 59 ++++++++++++++++++++++++++++++----------------------------- - 1 file changed, 30 insertions(+), 29 deletions(-) + src/Makefile | 61 ++++++++++++++++++++++++++++++------------------------------ + 1 file changed, 31 insertions(+), 30 deletions(-) diff --git a/src/Makefile b/src/Makefile -index 607ab45..b23ec23 100644 +index 607ab45..a88adf4 100644 --- a/src/Makefile +++ b/src/Makefile @@ -52,15 +52,16 @@ TESTOPTS= @@ -30,6 +30,15 @@ index 607ab45..b23ec23 100644 # Note, for profiling, use # make O_OPTS='-pg -O0' LDFLAGS='-g -pg' +@@ -92,7 +93,7 @@ LIBPRIMER3 = libprimer3.a + LIBPRIMER3_DYN = libprimer3.so.1.0.0 + LIBRARIES = $(LIBPRIMER3) $(LIBDPAL) $(LIBTHAL) $(LIBOLIGOTM) + DYNLIBS = $(LIBPRIMER3_DYN) $(LIBDPAL_DYN) $(LIBTHAL_DYN) $(LIBOLIGOTM_DYN) +-RANLIB = ranlib ++RANLIB ?= ranlib + + PRIMER_OBJECTS1=primer3_boulder_main.o\ + format_output.o\ @@ -127,85 +128,85 @@ $(LIBOLIGOTM): oligotm.o $(RANLIB) $@ |