diff options
author | Justin Lecher <jlec@gentoo.org> | 2015-08-03 07:08:06 +0000 |
---|---|---|
committer | Justin Lecher <jlec@gentoo.org> | 2015-08-03 07:08:06 +0000 |
commit | 61a57426b5a985a15499d1af2f0410360cd0560f (patch) | |
tree | dd6d7b22720afb00a4bf5b2831b5d99472c56f60 /sci-biology | |
parent | Drop old (diff) | |
download | historical-61a57426b5a985a15499d1af2f0410360cd0560f.tar.gz historical-61a57426b5a985a15499d1af2f0410360cd0560f.tar.bz2 historical-61a57426b5a985a15499d1af2f0410360cd0560f.zip |
Drop old; obsoletes bug #555044
Package-Manager: portage-2.2.20/cvs/Linux x86_64
Manifest-Sign-Key: 0xE9402A79B03529A2!
Diffstat (limited to 'sci-biology')
-rw-r--r-- | sci-biology/mira/ChangeLog | 5 | ||||
-rw-r--r-- | sci-biology/mira/Manifest | 36 | ||||
-rw-r--r-- | sci-biology/mira/mira-3.9.18.ebuild | 72 |
3 files changed, 22 insertions, 91 deletions
diff --git a/sci-biology/mira/ChangeLog b/sci-biology/mira/ChangeLog index 4e33003d1b4f..61ec2a25a1a6 100644 --- a/sci-biology/mira/ChangeLog +++ b/sci-biology/mira/ChangeLog @@ -1,6 +1,9 @@ # ChangeLog for sci-biology/mira # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/ChangeLog,v 1.33 2015/08/02 18:53:02 ago Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/ChangeLog,v 1.34 2015/08/03 07:08:05 jlec Exp $ + + 03 Aug 2015; Justin Lecher <jlec@gentoo.org> -mira-3.9.18.ebuild: + Drop old; obsoletes bug #555044 02 Aug 2015; Agostino Sarubbo <ago@gentoo.org> mira-4.0.2.ebuild: Stable for x86, wrt bug #556138 diff --git a/sci-biology/mira/Manifest b/sci-biology/mira/Manifest index 828bc7adcdba..9f5c7545de70 100644 --- a/sci-biology/mira/Manifest +++ b/sci-biology/mira/Manifest @@ -1,31 +1,31 @@ -----BEGIN PGP SIGNED MESSAGE----- -Hash: SHA256 +Hash: SHA512 AUX mira-3.0.0-asneeded.patch 1468 SHA256 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Shotgun and EST Sequence Assembler for Sanger, 454 and Solexa / Illumina" -HOMEPAGE="http://www.chevreux.org/projects_mira.html" -SRC_URI=" - http://sourceforge.net/projects/mira-assembler/files/MIRA/development/${P}.tar.bz2 - mirror://sourceforge/mira-assembler/mira_3rdparty_${MIRA_3RDPARTY_PV}.tar.bz2" - -SLOT="0" -LICENSE="GPL-2" -KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux ~x86-macos" -IUSE="doc" - -CDEPEND=" - dev-libs/boost - dev-util/google-perftools" -DEPEND="${CDEPEND} - app-editors/vim-core - dev-libs/expat" -RDEPEND="${CDEPEND}" - -#DOCS=( AUTHORS GETTING_STARTED NEWS README HELP_WANTED -# THANKS doc/3rdparty/scaffolding_MIRA_BAMBUS.pdf ) -DOCS=( AUTHORS GETTING_STARTED NEWS README HELP_WANTED THANKS ) - -src_prepare() { - find -name 'configure*' -or -name 'Makefile*' | xargs sed -i 's/flex++/flex -+/' || die - epatch \ - "${FILESDIR}"/${PN}-3.4.0.2-boost-1.50.patch - - sed \ - -e "s:-O[23]::g" \ - -e "s:-funroll-loops::g" \ - -i configure.ac || die - - ln -s config/m4 . || die - AT_M4DIR="config/m4" eautoreconf -} - -src_configure() { - econf \ - --with-boost="${EPREFIX}/usr/$(get_libdir)" \ - --with-boost-libdir="${EPREFIX}/usr/$(get_libdir)" \ - --with-boost-thread=boost_thread-mt -} - -#src_compile() { -# base_src_compile -# # TODO: resolve docbook incompatibility for building docs -# if use doc; then emake -C doc clean docs || die; fi -#} - -src_install() { - default - dodoc ${DOCS[@]} - - dobin "${WORKDIR}"/3rdparty/{sff_extract,qual2ball,*.pl} - dodoc "${WORKDIR}"/3rdparty/{README.txt,midi_screen.fasta} -} - -pkg_postinst() { - einfo "Documentation is no longer built, you can find it at:" - einfo "http://mira-assembler.sourceforge.net/docs/DefinitiveGuideToMIRA.html" -} |