Install header files, support for LFS, optional support for PVM and threads.

Package-Manager: portage-2.0.51.19

4 files changed, 62 insertions, 2 deletions

diff --git a/sci-biology/hmmer/ChangeLog b/sci-biology/hmmer/ChangeLog
index 82426cc1f96b..223ab59db446 100644
--- a/sci-biology/hmmer/ChangeLog
+++ b/sci-biology/hmmer/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/hmmer
 # Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/ChangeLog,v 1.3 2005/02/08 00:15:30 augustus Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/ChangeLog,v 1.4 2005/03/06 15:04:58 ribosome Exp $
+
+*hmmer-2.3.2-r1 (06 Mar 2005)
+
+  06 Mar 2005; Olivier Fisette <ribosome@gentoo.org> +hmmer-2.3.2-r1.ebuild:
+  Install header files, support for LFS, optional support for PVM and threads.
 
   07 Feb 2005; <augustus@gentoo.org> hmmer-2.3.2.ebuild:
   Marked amd64.
diff --git a/sci-biology/hmmer/Manifest b/sci-biology/hmmer/Manifest
index cbc456a11283..e939ada87045 100644
--- a/sci-biology/hmmer/Manifest
+++ b/sci-biology/hmmer/Manifest
@@ -1,5 +1,7 @@
-MD5 054635439085e9a52db58e637ff45d6a ChangeLog 1338
 MD5 b6535554daed47342c9e632acc271cfc hmmer-2.3.2.ebuild 924
+MD5 35218778d17ed4310b6a965202e32218 hmmer-2.3.2-r1.ebuild 1153
+MD5 ad9fa2e38888bcd7618ec0c50aacea80 ChangeLog 1526
 MD5 e8b4df3df76800c376905734d8043cfa metadata.xml 216
 MD5 9fbc129db1a886510ff026fd89e131f1 files/Makefile-hmmer-2.2g.patch 1040
+MD5 355efcc8eaed16353cd1ed41c2d63b4e files/digest-hmmer-2.3.2-r1 64
 MD5 355efcc8eaed16353cd1ed41c2d63b4e files/digest-hmmer-2.3.2 64
diff --git a/sci-biology/hmmer/files/digest-hmmer-2.3.2-r1 b/sci-biology/hmmer/files/digest-hmmer-2.3.2-r1
new file mode 100644
index 000000000000..a923f14534a4
--- /dev/null
+++ b/sci-biology/hmmer/files/digest-hmmer-2.3.2-r1
@@ -0,0 +1 @@
+MD5 5f073340c0cf761288f961a73821228a hmmer-2.3.2.tar.gz 1024933
diff --git a/sci-biology/hmmer/hmmer-2.3.2-r1.ebuild b/sci-biology/hmmer/hmmer-2.3.2-r1.ebuild
new file mode 100644
index 000000000000..8596451bd503
--- /dev/null
+++ b/sci-biology/hmmer/hmmer-2.3.2-r1.ebuild
@@ -0,0 +1,52 @@
+# Copyright 1999-2005 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/hmmer-2.3.2-r1.ebuild,v 1.1 2005/03/06 15:04:58 ribosome Exp $
+
+DESCRIPTION="Sequence analysis using profile hidden Markov models"
+LICENSE="GPL-2"
+HOMEPAGE="http://hmmer.wustl.edu/"
+SRC_URI="ftp://ftp.genetics.wustl.edu/pub/eddy/${PN}/${PV}/${P}.tar.gz"
+
+SLOT="0"
+IUSE="pvm threads"
+KEYWORDS="~x86 ~amd64 ~ppc"
+
+DEPEND="virtual/libc
+	pvm? ( sys-cluster/pvm )"
+
+src_compile() {
+	./configure \
+		--host=${CHOST} \
+		--prefix=${D}/usr \
+		--exec_prefix=${D}/usr \
+		--mandir=${D}/usr/share/man \
+		--enable-lfs \
+		$(use_enable pvm) \
+		$(use_enable threads) || die
+	emake || die
+}
+
+src_install() {
+	einstall || die
+
+	cd src
+	dolib libhmmer.a
+	insinto /usr/include/hmmer
+	doins *.h
+
+	cd ../squid
+	dobin afetch alistat compalign compstruct revcomp seqstat seqsplit sfetch shuffle sreformat sindex weight translate
+	dolib libsquid.a
+	insinto /usr/include/hmmer
+	doins *.h
+
+	cd ..
+	dodoc NOTES
+	newdoc 00README README
+	insinto /usr/share/doc/${PF}
+	doins Userguide.pdf
+}
+
+src_test() {
+	make check
+}