diff options
| author |   Olivier Fisette <ribosome@gentoo.org> | 2006-07-21 00:27:35 +0000 |
|---|---|---|
| committer | Olivier Fisette <ribosome@gentoo.org> | 2006-07-21 00:27:35 +0000 |
| commit | 493694bfa2d66bb3172c153adb42d7b8de0e0ddf (patch) | |
| tree | 51f50c783a882769d3f64baecd449cd54ad88cb6 /sci-biology | |
| parent | Add diablo-jre-bin as option for the jre 1.5, for FreeBSD, and add ~x86-fbsd ... (diff) | |
| download | historical-493694bfa2d66bb3172c153adb42d7b8de0e0ddf.tar.gz historical-493694bfa2d66bb3172c153adb42d7b8de0e0ddf.tar.bz2 historical-493694bfa2d66bb3172c153adb42d7b8de0e0ddf.zip | |
Fixed download URL (silent upstream repackaging).
Package-Manager: portage-2.1-r1
Diffstat (limited to 'sci-biology')
12 files changed, 63 insertions, 19 deletions
diff --git a/sci-biology/embassy-meme/ChangeLog b/sci-biology/embassy-meme/ChangeLog index ebd1e91df26f..193b74c7cddf 100644 --- a/sci-biology/embassy-meme/ChangeLog +++ b/sci-biology/embassy-meme/ChangeLog @@ -1,6 +1,10 @@ # ChangeLog for sci-biology/embassy-meme -# Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-meme/ChangeLog,v 1.15 2005/10/04 00:06:31 ribosome Exp $ +# Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-meme/ChangeLog,v 1.16 2006/07/21 00:21:50 ribosome Exp $ + + 21 Jul 2006; Olivier Fisette <ribosome@gentoo.org> + embassy-meme-2.3.1-r2.ebuild: + Fixed download URL (silent upstream repackaging). 04 Oct 2005; Olivier Fisette <ribosome@gentoo.org> -embassy-meme-2.3.1-r1.ebuild: diff --git a/sci-biology/embassy-meme/embassy-meme-2.3.1-r2.ebuild b/sci-biology/embassy-meme/embassy-meme-2.3.1-r2.ebuild index 3ff1bf39b34d..6cc29d1ee158 100644 --- a/sci-biology/embassy-meme/embassy-meme-2.3.1-r2.ebuild +++ b/sci-biology/embassy-meme/embassy-meme-2.3.1-r2.ebuild @@ -1,14 +1,16 @@ -# Copyright 1999-2005 Gentoo Foundation +# Copyright 1999-2006 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-meme/embassy-meme-2.3.1-r2.ebuild,v 1.4 2005/10/03 23:54:12 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-meme/embassy-meme-2.3.1-r2.ebuild,v 1.5 2006/07/21 00:21:50 ribosome Exp $ EBOV="3.0.0" inherit embassy DESCRIPTION="EMBOSS integrated version of MEME - Multiple Em for Motif Elicitation" +SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/old/${EBOV}/EMBOSS-${EBOV}.tar.gz + ftp://emboss.open-bio.org/pub/EMBOSS/old/${EBOV}/${EF}.tar.gz" -RESTRICT="nomirror" +RESTRICT="mirror" KEYWORDS="ppc ppc-macos x86" diff --git a/sci-biology/embassy-meme/files/digest-embassy-meme-2.3.1-r2 b/sci-biology/embassy-meme/files/digest-embassy-meme-2.3.1-r2 index e50297441194..a369ae841936 100644 --- a/sci-biology/embassy-meme/files/digest-embassy-meme-2.3.1-r2 +++ b/sci-biology/embassy-meme/files/digest-embassy-meme-2.3.1-r2 @@ -1,2 +1,6 @@ MD5 fa72feded9ab9272e3e731c09f545dcc EMBOSS-3.0.0.tar.gz 16257908 +RMD160 4f8a2b0c05f2d77bec27bd3b1886d253b55b1c40 EMBOSS-3.0.0.tar.gz 16257908 +SHA256 47a51ba7aeb9f6e7f4cd23c28cffad7c6d28432e92f37d6f08121791ef894dea EMBOSS-3.0.0.tar.gz 16257908 MD5 6f4e516e413582268a34e91fb12e21c3 MEME-2.3.1.tar.gz 423966 +RMD160 d98de663bbe3271b38b269dbc34d106aa3a5b4fa MEME-2.3.1.tar.gz 423966 +SHA256 bec2c8002b8b551ef9c639bcb58633499060cd8a1bfe4754db5ed201a6a0dffa MEME-2.3.1.tar.gz 423966 diff --git a/sci-biology/embassy-mse/ChangeLog b/sci-biology/embassy-mse/ChangeLog index 62702a724412..2d9ffd73108f 100644 --- a/sci-biology/embassy-mse/ChangeLog +++ b/sci-biology/embassy-mse/ChangeLog @@ -1,6 +1,10 @@ # ChangeLog for sci-biology/embassy-mse -# Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-mse/ChangeLog,v 1.15 2005/10/04 00:06:31 ribosome Exp $ +# Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-mse/ChangeLog,v 1.16 2006/07/21 00:23:56 ribosome Exp $ + + 21 Jul 2006; Olivier Fisette <ribosome@gentoo.org> + embassy-mse-1.0.0-r2.ebuild: + Fixed download URL (silent upstream repackaging). 04 Oct 2005; Olivier Fisette <ribosome@gentoo.org> -embassy-mse-1.0.0-r1.ebuild: diff --git a/sci-biology/embassy-mse/embassy-mse-1.0.0-r2.ebuild b/sci-biology/embassy-mse/embassy-mse-1.0.0-r2.ebuild index bf4ce3626499..74628f2caade 100644 --- a/sci-biology/embassy-mse/embassy-mse-1.0.0-r2.ebuild +++ b/sci-biology/embassy-mse/embassy-mse-1.0.0-r2.ebuild @@ -1,16 +1,18 @@ -# Copyright 1999-2005 Gentoo Foundation +# Copyright 1999-2006 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-mse/embassy-mse-1.0.0-r2.ebuild,v 1.4 2005/10/03 23:54:12 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-mse/embassy-mse-1.0.0-r2.ebuild,v 1.5 2006/07/21 00:23:56 ribosome Exp $ EBOV="3.0.0" inherit embassy DESCRIPTION="EMBOSS integrated version of MSE - Multiple Sequence Screen Editor" +SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/old/${EBOV}/EMBOSS-${EBOV}.tar.gz + ftp://emboss.open-bio.org/pub/EMBOSS/old/${EBOV}/${EF}.tar.gz" KEYWORDS="ppc ppc-macos x86" -RESTRICT="nomirror" +RESTRICT="mirror" src_install() { embassy_src_install diff --git a/sci-biology/embassy-mse/files/digest-embassy-mse-1.0.0-r2 b/sci-biology/embassy-mse/files/digest-embassy-mse-1.0.0-r2 index 93bd3f6c5b7f..6d7c76b963b4 100644 --- a/sci-biology/embassy-mse/files/digest-embassy-mse-1.0.0-r2 +++ b/sci-biology/embassy-mse/files/digest-embassy-mse-1.0.0-r2 @@ -1,2 +1,6 @@ MD5 fa72feded9ab9272e3e731c09f545dcc EMBOSS-3.0.0.tar.gz 16257908 +RMD160 4f8a2b0c05f2d77bec27bd3b1886d253b55b1c40 EMBOSS-3.0.0.tar.gz 16257908 +SHA256 47a51ba7aeb9f6e7f4cd23c28cffad7c6d28432e92f37d6f08121791ef894dea EMBOSS-3.0.0.tar.gz 16257908 MD5 3b9810e870937ec32220b5c9fe7a83cd MSE-1.0.0.tar.gz 415051 +RMD160 c15c6341e2897f4a6f683e70375a14d6c9b32fcf MSE-1.0.0.tar.gz 415051 +SHA256 ddf9092721666d64c56733d9b6d04e749957848cafa8ba4ec6eee083a0ffcab3 MSE-1.0.0.tar.gz 415051 diff --git a/sci-biology/embassy-phylip/ChangeLog b/sci-biology/embassy-phylip/ChangeLog index 716557edef3c..5f2ff2fe9649 100644 --- a/sci-biology/embassy-phylip/ChangeLog +++ b/sci-biology/embassy-phylip/ChangeLog @@ -1,6 +1,10 @@ # ChangeLog for sci-biology/embassy-phylip -# Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-phylip/ChangeLog,v 1.15 2005/10/04 00:06:31 ribosome Exp $ +# Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-phylip/ChangeLog,v 1.16 2006/07/21 00:25:38 ribosome Exp $ + + 21 Jul 2006; Olivier Fisette <ribosome@gentoo.org> + embassy-phylip-3.6b.ebuild: + Fixed download URL (silent upstream repackaging). 04 Oct 2005; Olivier Fisette <ribosome@gentoo.org> -embassy-phylip-3.57c-r1.ebuild: diff --git a/sci-biology/embassy-phylip/embassy-phylip-3.6b.ebuild b/sci-biology/embassy-phylip/embassy-phylip-3.6b.ebuild index 3e647fbf078a..e9f7efd91c8d 100644 --- a/sci-biology/embassy-phylip/embassy-phylip-3.6b.ebuild +++ b/sci-biology/embassy-phylip/embassy-phylip-3.6b.ebuild @@ -1,6 +1,6 @@ -# Copyright 1999-2005 Gentoo Foundation +# Copyright 1999-2006 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-phylip/embassy-phylip-3.6b.ebuild,v 1.4 2005/10/03 23:54:12 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-phylip/embassy-phylip-3.6b.ebuild,v 1.5 2006/07/21 00:25:38 ribosome Exp $ EBOV="3.0.0" @@ -8,5 +8,9 @@ inherit embassy DESCRIPTION="EMBOSS integrated version of the PHYLogeny Inference Package" LICENSE="freedist" +SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/old/${EBOV}/EMBOSS-${EBOV}.tar.gz + ftp://emboss.open-bio.org/pub/EMBOSS/old/${EBOV}/${EF}.tar.gz" + +RESTRICT="mirror" KEYWORDS="ppc ppc-macos x86" diff --git a/sci-biology/embassy-phylip/files/digest-embassy-phylip-3.6b b/sci-biology/embassy-phylip/files/digest-embassy-phylip-3.6b index 75a4eb235e54..76c8e74861fc 100644 --- a/sci-biology/embassy-phylip/files/digest-embassy-phylip-3.6b +++ b/sci-biology/embassy-phylip/files/digest-embassy-phylip-3.6b @@ -1,2 +1,6 @@ MD5 fa72feded9ab9272e3e731c09f545dcc EMBOSS-3.0.0.tar.gz 16257908 -MD5 94c69de9dbba1170c61a52f7b9275ae5 PHYLIP-3.6b.tar.gz 1136543 +RMD160 4f8a2b0c05f2d77bec27bd3b1886d253b55b1c40 EMBOSS-3.0.0.tar.gz 16257908 +SHA256 47a51ba7aeb9f6e7f4cd23c28cffad7c6d28432e92f37d6f08121791ef894dea EMBOSS-3.0.0.tar.gz 16257908 +MD5 6f2c10438d788acf4a1dff23441b2a2c PHYLIP-3.6b.tar.gz 1136746 +RMD160 c6dcbb4445cb8e13b3c22bdbe4a420c10c02a8c6 PHYLIP-3.6b.tar.gz 1136746 +SHA256 32aba94d0be011ee304e974657db11544297c008e53341cd000a1f412eb874e2 PHYLIP-3.6b.tar.gz 1136746 diff --git a/sci-biology/embassy-signature/ChangeLog b/sci-biology/embassy-signature/ChangeLog index e17aacd17998..ecd6f4ace19c 100644 --- a/sci-biology/embassy-signature/ChangeLog +++ b/sci-biology/embassy-signature/ChangeLog @@ -1,6 +1,10 @@ # ChangeLog for sci-biology/embassy-signature -# Copyright 1999-2005 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-signature/ChangeLog,v 1.4 2005/10/03 23:54:12 ribosome Exp $ +# Copyright 1999-2006 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-signature/ChangeLog,v 1.5 2006/07/21 00:27:35 ribosome Exp $ + + 21 Jul 2006; Olivier Fisette <ribosome@gentoo.org> + embassy-signature-0.1.0.ebuild: + Fixed download URL (silent upstream repackaging). 03 Oct 2005; Olivier Fisette <ribosome@gentoo.org> embassy-signature-0.1.0.ebuild: diff --git a/sci-biology/embassy-signature/embassy-signature-0.1.0.ebuild b/sci-biology/embassy-signature/embassy-signature-0.1.0.ebuild index 5a324911c68c..f9708588bf04 100644 --- a/sci-biology/embassy-signature/embassy-signature-0.1.0.ebuild +++ b/sci-biology/embassy-signature/embassy-signature-0.1.0.ebuild @@ -1,11 +1,15 @@ -# Copyright 1999-2005 Gentoo Foundation +# Copyright 1999-2006 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-signature/embassy-signature-0.1.0.ebuild,v 1.4 2005/10/03 23:54:12 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-signature/embassy-signature-0.1.0.ebuild,v 1.5 2006/07/21 00:27:35 ribosome Exp $ EBOV="3.0.0" inherit embassy DESCRIPTION="Protein signature add-on package for EMBOSS" +SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/old/${EBOV}/EMBOSS-${EBOV}.tar.gz + ftp://emboss.open-bio.org/pub/EMBOSS/old/${EBOV}/${EF}.tar.gz" + +RESTRICT="mirror" KEYWORDS="ppc ppc-macos x86" diff --git a/sci-biology/embassy-signature/files/digest-embassy-signature-0.1.0 b/sci-biology/embassy-signature/files/digest-embassy-signature-0.1.0 index 724f198dc154..03ee605345fd 100644 --- a/sci-biology/embassy-signature/files/digest-embassy-signature-0.1.0 +++ b/sci-biology/embassy-signature/files/digest-embassy-signature-0.1.0 @@ -1,2 +1,6 @@ MD5 fa72feded9ab9272e3e731c09f545dcc EMBOSS-3.0.0.tar.gz 16257908 +RMD160 4f8a2b0c05f2d77bec27bd3b1886d253b55b1c40 EMBOSS-3.0.0.tar.gz 16257908 +SHA256 47a51ba7aeb9f6e7f4cd23c28cffad7c6d28432e92f37d6f08121791ef894dea EMBOSS-3.0.0.tar.gz 16257908 MD5 1e30e12048609a468b7b4d4affb177cf SIGNATURE-0.1.0.tar.gz 400125 +RMD160 eccec0b5d57ee2e2a0a9c37adff04d11a395ddb7 SIGNATURE-0.1.0.tar.gz 400125 +SHA256 c6bb252beaccac5256d99301933b15da6ef90af3f20d7f92fed1f78b271785ee SIGNATURE-0.1.0.tar.gz 400125 |