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authorAndrey Kislyuk <weaver@gentoo.org>2009-09-10 23:44:49 +0000
committerAndrey Kislyuk <weaver@gentoo.org>2009-09-10 23:44:49 +0000
commitf719e73dec2e53357fc4c880d0e2c71e7b41f880 (patch)
tree35fde8db893de3058b67970c935985295178a173 /sci-biology/vienna-rna
parentNew package, ebuild written by me (diff)
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Fix gcc-4.4 patching
Package-Manager: portage-2.2_rc30/cvs/Linux x86_64
Diffstat (limited to 'sci-biology/vienna-rna')
-rw-r--r--sci-biology/vienna-rna/ChangeLog5
-rw-r--r--sci-biology/vienna-rna/Manifest4
-rw-r--r--sci-biology/vienna-rna/vienna-rna-1.8.3.ebuild4
3 files changed, 9 insertions, 4 deletions
diff --git a/sci-biology/vienna-rna/ChangeLog b/sci-biology/vienna-rna/ChangeLog
index bd51332fff71..d055242a1e05 100644
--- a/sci-biology/vienna-rna/ChangeLog
+++ b/sci-biology/vienna-rna/ChangeLog
@@ -1,6 +1,9 @@
# ChangeLog for sci-biology/vienna-rna
# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/ChangeLog,v 1.21 2009/09/10 18:43:01 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/ChangeLog,v 1.22 2009/09/10 23:44:49 weaver Exp $
+
+ 10 Sep 2009; Andrey Kislyuk <weaver@gentoo.org> vienna-rna-1.8.3.ebuild:
+ Fix gcc-4.4 patching, bug 284539
*vienna-rna-1.8.3 (10 Sep 2009)
diff --git a/sci-biology/vienna-rna/Manifest b/sci-biology/vienna-rna/Manifest
index adb21a54d67c..a3a5b1841a99 100644
--- a/sci-biology/vienna-rna/Manifest
+++ b/sci-biology/vienna-rna/Manifest
@@ -8,6 +8,6 @@ AUX vienna-rna-1.8.3-gcc4.3.patch 2825 RMD160 564b0904d3442e1a835478c405771b2885
DIST ViennaRNA-1.7.2.tar.gz 1298982 RMD160 768f53ba9e0f784b066ae485451eb0abd6f6631c SHA1 36a4bfcf88599afc479be14bc324ef4ce9d629a3 SHA256 202887653033de9e50644acd5c3d8607f215d6c84eef9d68a936837edf71a00e
DIST ViennaRNA-1.8.3.tar.gz 1706482 RMD160 988932b0b87ed708bd52fabca6fc42c21a9562b4 SHA1 ddbf130a9f0c1d28f1a2afcb4da16172c48628a9 SHA256 84feb86ebfc03c95ca82296cf255eee022da9733b38b452ce1b10084dc5f0108
EBUILD vienna-rna-1.7.2.ebuild 2278 RMD160 68d114c0f1305c08617bca9fe255f3c0c0b82ee8 SHA1 868dda0408447c202e29a5e4c302b01fe9109848 SHA256 291feae43b88b013158646c57cc021d61be3019eb2539341d01d3ee62c58a134
-EBUILD vienna-rna-1.8.3.ebuild 2266 RMD160 4fa2f6c726b264c36be277db8e2933acff52b1a3 SHA1 224149908ed61b58d4c410575ba01804d289aef8 SHA256 6a0437f98d00a219dc8588000475972a75f24fd495fd2ce5101c6a8f93f12d80
-MISC ChangeLog 3727 RMD160 f2fa7c9d320be117703fa6a0c1f8cf6b8bfd97ff SHA1 6946bdecf5c5bfebb7daf46dd69d41fd7a0d18ae SHA256 1911bb0d2db08a99a3778a4376f9e3493e11fcb89071fd5d3586ec241d6a8e33
+EBUILD vienna-rna-1.8.3.ebuild 2335 RMD160 db2158ee200fd3a4767f879b4a2bee27b3938169 SHA1 5e67f19ee2ecb52f84d37cb67c8ef030d8c7c0b8 SHA256 0f28073965fd8809641452a55ec98dbf99e96e8fea758ccf1be0ac4c2b49597a
+MISC ChangeLog 3838 RMD160 df2e2df879322cd55cb71d6e1a576a6fb111b5bf SHA1 efdc6e59bc570485a3411db5554080e02a62e172 SHA256 ed826239a25605b8a00fef3bc71003587b6d2898be14964889dcf4d5b773b0aa
MISC metadata.xml 1210 RMD160 41d50f7af8428b196c4ef855b68dcb657588bb34 SHA1 08f8e1aa88086fd9a3f5fa03fa46c31e12a3f776 SHA256 9c8b3f60f6098accff7c67f26ea07cb5b57e9ed8eae5d3d03949f1718ab6517e
diff --git a/sci-biology/vienna-rna/vienna-rna-1.8.3.ebuild b/sci-biology/vienna-rna/vienna-rna-1.8.3.ebuild
index dd7cfd2583ad..62d706be42c0 100644
--- a/sci-biology/vienna-rna/vienna-rna-1.8.3.ebuild
+++ b/sci-biology/vienna-rna/vienna-rna-1.8.3.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2009 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.8.3.ebuild,v 1.1 2009/09/10 18:43:01 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.8.3.ebuild,v 1.2 2009/09/10 23:44:49 weaver Exp $
EAPI="2"
@@ -31,6 +31,8 @@ PATCHES=(
src_prepare() {
base_src_prepare
sed -i 's/ getline/ v_getline/' Readseq/ureadseq.c || die
+ sed -i '1 i #include <cstdio>' RNAforester/src/rnafuncs.cpp || die
+
eautoreconf
(cd RNAforester; eautoreconf)
}