diff options
| author |   Justin Lecher <jlec@gentoo.org> | 2013-02-27 16:39:19 +0000 |
|---|---|---|
| committer | Justin Lecher <jlec@gentoo.org> | 2013-02-27 16:39:19 +0000 |
| commit | fc26539c59a5ca1112cb2c4fddc6bc21b71c8396 (patch) | |
| tree | f78ef0de29b760ae0ad0f02744ce8071e89a3339 /sci-biology/vcftools | |
| parent | sci-biology/plink: Use detected pkg-config instead of generic (diff) | |
| download | historical-fc26539c59a5ca1112cb2c4fddc6bc21b71c8396.tar.gz historical-fc26539c59a5ca1112cb2c4fddc6bc21b71c8396.tar.bz2 historical-fc26539c59a5ca1112cb2c4fddc6bc21b71c8396.zip | |
sci-biology/vcftools: Use PKG_CONFIG instead of generic pkg-config
Package-Manager: portage-2.2.0_alpha163/cvs/Linux x86_64
Manifest-Sign-Key: 0x70EB7916
Diffstat (limited to 'sci-biology/vcftools')
| -rw-r--r-- | sci-biology/vcftools/ChangeLog | 8 | ||||
| -rw-r--r-- | sci-biology/vcftools/Manifest | 15 | ||||
| -rw-r--r-- | sci-biology/vcftools/files/vcftools-0.1.8-buildsystem.patch | 4 | ||||
| -rw-r--r-- | sci-biology/vcftools/metadata.xml | 10 | ||||
| -rw-r--r-- | sci-biology/vcftools/vcftools-0.1.8.ebuild | 8 |
5 files changed, 24 insertions, 21 deletions
diff --git a/sci-biology/vcftools/ChangeLog b/sci-biology/vcftools/ChangeLog index 27ec7612ae59..2850f8211f3a 100644 --- a/sci-biology/vcftools/ChangeLog +++ b/sci-biology/vcftools/ChangeLog @@ -1,6 +1,10 @@ # ChangeLog for sci-biology/vcftools -# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/vcftools/ChangeLog,v 1.4 2012/07/19 11:31:13 jlec Exp $ +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/vcftools/ChangeLog,v 1.5 2013/02/27 16:39:18 jlec Exp $ + + 27 Feb 2013; Justin Lecher <jlec@gentoo.org> vcftools-0.1.8.ebuild, + files/vcftools-0.1.8-buildsystem.patch, metadata.xml: + Use PKG_CONFIG instead of generic pkg-config *vcftools-0.1.8 (19 Jul 2012) diff --git a/sci-biology/vcftools/Manifest b/sci-biology/vcftools/Manifest index 4ffa860871a9..d577add8b0a4 100644 --- a/sci-biology/vcftools/Manifest +++ b/sci-biology/vcftools/Manifest @@ -1,18 +1,17 @@ -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 -AUX vcftools-0.1.8-buildsystem.patch 1161 SHA256 d414e300b18857cb4440d1a4587a9335ba1238d9a6ab1b232098586160ad145d SHA512 faaa57e20b29bf7ef5818f104d2be25a54b9b1cfd9f20df0325cf500f73fd693728f6f59fd2f6b6bec30f9c7c0b4301fe4fad364f833776feea47df018b27a4a WHIRLPOOL 45649955d5fbc3b761e7b2c3a83a4c27588b42a54fe23662eacb6f9c7e419ee25c50a05c2a5cb9d4cb0e1f82dffbe5d2aacf70cd8f53de6401cd10da9519b0d7 +AUX vcftools-0.1.8-buildsystem.patch 1164 SHA256 00bbbea2d9797f4014dc4ce7709ef602d2dc76d2801d273384ebe45d3c223743 SHA512 84a53c4d24686aadc49aad3b0ce4c499ea70e4641d2c3ae7508caf577b08d1a34dd2b7978a8f589eef6240609a32a3e8d1df3954aab54c0c14ab2463c26b0da0 WHIRLPOOL ce0eaaba56a189c9687cbb3d565c003c759e1040da0d2ccf5bc7758744dfc7d06c0f1b48bf7af6fbe7cd79b51755cb5f24882e44c9be9d64511abe384f295d85 DIST vcftools_0.1.7.tar.gz 489145 SHA256 e40685f082aef92511a80af723cb813b87773537eb4fed630716682e8c80a4c0 SHA512 130304d7c4c0058d4547d04f4e52e75c5562ef7c636b7c788654a00f300da15d12eb5d66e94c2e764049275d242b7ce05bfa7f3beb99c857c5d84d26009ea329 WHIRLPOOL 9bf171456b6d2902b4ed5dfc47cb84b2c6615a647c7c04e215a1592bcaa29edb87bbc5fede57df4a68549bc03284eb8800e821c6336e56e11f4d61e98f98827c DIST vcftools_0.1.8.tar.gz 568268 SHA256 bf360b315181b2f06c85a19c1ce1c539ecce81f187f4da9ae7f8616300573a61 SHA512 5dc35d8adaea16716e5383427c9458fcf965cee1feb980f8ade166ae67403c7f1ae4d74d1218f23c4032187588834f801ea602d86fe94033dc922fe3f58f0c04 WHIRLPOOL ca9a9448bafee8a0c27752e7a6c18c8050b55f9402c072ee313bcb9bd85c2369e2f76f339429c317b37e5a889472667a4e3fc7b3ba9fb221932022e7c997da37 EBUILD vcftools-0.1.7.ebuild 904 SHA256 8387dc4756bce66f6a59888e7d340340dd4b48a5af02f9a2bbbf0778892f7d52 SHA512 24e5e8ec18b3341f5a6181dd0e72e2767f8397ad7937458773ccc39b12c3574df32d84173ce0e64fdc5eeb372cbaf5553054d40ada7e25dbe9333c5db71621a4 WHIRLPOOL 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c3aea4d69d75075af0108a03b7e109cfed6a1fe324f8ccbda3d4e5ca8a5070f1b24ddeb46b64787e10fd22252d867abcee1f31316d602f7e32fe3c990ae60d74 WHIRLPOOL e50da2f26fd4c908446d22da3edb595d60e61d72def374be46440358802a211fc34045b7ad970c4f94b57f7b17ff24cfe64dc94254fea20e047f1fbbbcae0c64 +EBUILD vcftools-0.1.8.ebuild 1085 SHA256 b3e90b7d6d3663d9d34b32b7dae9f933f6755c143ff35a2ef8204bc81bd94262 SHA512 d66f0ee991088e31ff99e806239104ca98f3c15de46a44c239b52e8e58e0bc8fcedd2a4eae9a1a2ee1f257a0d48ae1b9215948b6b7c6ceec3e789e32acdfdc88 WHIRLPOOL a7dc9031d26d7533a252e9ddd65d03de673061bf34beaee6234b988a749e041a78722279935292326892a1989a7938294f6460a22cea19891018d2e5a6650274 +MISC ChangeLog 989 SHA256 d3e122ece3b453f5eac7e3878b5105125929709d336afb533c7f698596a56e6f SHA512 e664b075ef54632b434b7b0ea62cd0919a2fdce291dad6b9c2afa48eb03bb6b6022c1cb940828a8923c3c11c882496338e9f44947a92223bec3e50883d0b3b77 WHIRLPOOL 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37caee9c28dd..d8b18e57d806 100644 --- a/sci-biology/vcftools/files/vcftools-0.1.8-buildsystem.patch +++ b/sci-biology/vcftools/files/vcftools-0.1.8-buildsystem.patch @@ -6,7 +6,7 @@ index 42d03e4..2f4d4f6 100644 --- a/cpp/Makefile +++ b/cpp/Makefile @@ -3,7 +3,7 @@ - # ($Revision: 1.1 $) + # ($Revision: 1.2 $) # Compiler -CPP = g++ @@ -28,7 +28,7 @@ index 42d03e4..2f4d4f6 100644 CPPFLAGS += -DVCFTOOLS_PCA # Add LAPACK library - LIB += -llapack -+ LIB += `pkg-config --libs lapack` ++ LIB += `$(PKG_CONFIG) --libs lapack` # Add PCA source code SOURCES += dgeev.cpp endif diff --git a/sci-biology/vcftools/metadata.xml b/sci-biology/vcftools/metadata.xml index 3302123e5718..fc7c76942a10 100644 --- a/sci-biology/vcftools/metadata.xml +++ b/sci-biology/vcftools/metadata.xml @@ -1,9 +1,9 @@ <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> - <maintainer> - <email>weaver@gentoo.org</email> - <name>Andrey Kislyuk</name> - </maintainer> - <herd>sci-biology</herd> + <maintainer> + <email>weaver@gentoo.org</email> + <name>Andrey Kislyuk</name> + </maintainer> + <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/vcftools/vcftools-0.1.8.ebuild b/sci-biology/vcftools/vcftools-0.1.8.ebuild index b378d7823283..c722ef41ec3b 100644 --- a/sci-biology/vcftools/vcftools-0.1.8.ebuild +++ b/sci-biology/vcftools/vcftools-0.1.8.ebuild @@ -1,6 +1,6 @@ -# Copyright 1999-2012 Gentoo Foundation +# Copyright 1999-2013 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/vcftools/vcftools-0.1.8.ebuild,v 1.1 2012/07/19 11:31:13 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/vcftools/vcftools-0.1.8.ebuild,v 1.2 2013/02/27 16:39:18 jlec Exp $ EAPI=4 @@ -17,7 +17,7 @@ SLOT="0" KEYWORDS="~x86 ~amd64" IUSE="lapack" -RDEPEND="virtual/lapack" +RDEPEND="lapack? ( virtual/lapack )" DEPEND="${RDEPEND} virtual/pkgconfig" @@ -25,7 +25,7 @@ S="${WORKDIR}/${MY_P}" src_prepare() { epatch "${FILESDIR}"/${P}-buildsystem.patch - tc-export CXX + tc-export CXX PKG_CONFIG } src_compile() { |