New upstream version.

Package-Manager: portage-2.1.3.9

5 files changed, 75 insertions, 10 deletions

diff --git a/sci-biology/phylip/ChangeLog b/sci-biology/phylip/ChangeLog
index 4afa2b271190..3ab79e9b588e 100644
--- a/sci-biology/phylip/ChangeLog
+++ b/sci-biology/phylip/ChangeLog
@@ -1,6 +1,13 @@
 # ChangeLog for sci-biology/phylip
 # Copyright 2000-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/phylip/ChangeLog,v 1.26 2007/08/30 21:00:59 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/phylip/ChangeLog,v 1.27 2007/09/19 18:32:04 ribosome Exp $
+
+*phylip-3.67 (19 Sep 2007)
+
+  19 Sep 2007; Olivier Fisette <ribosome@gentoo.org> files/README.Gentoo,
+  +phylip-3.67.ebuild:
+  New upstream version. (Thanks to Arfrever Frehtes Taifersar Arahesis
+  <arfrever.fta@gmail.com> for reporting. See bug #191869)
 
   30 Aug 2007; Olivier Fisette <ribosome@gentoo.org> phylip-3.66.ebuild:
   Added to ~amd64.
diff --git a/sci-biology/phylip/Manifest b/sci-biology/phylip/Manifest
index f711e578e7b2..03fbf678b809 100644
--- a/sci-biology/phylip/Manifest
+++ b/sci-biology/phylip/Manifest
@@ -1,9 +1,10 @@
-AUX README.Gentoo 632 RMD160 5f406e5dedd4eb79b1a573e4c2822edb4718947e SHA1 e6dd19d0477dd9cb08df3813c69ec3f23eaeea11 SHA256 4a8b6651a77c58de82c72f34fbf41b386750bbc2b4c928fc2447b38e91824df7
-MD5 db251cf00973e0ed3fbf253071c8cec6 files/README.Gentoo 632
-RMD160 5f406e5dedd4eb79b1a573e4c2822edb4718947e files/README.Gentoo 632
-SHA256 4a8b6651a77c58de82c72f34fbf41b386750bbc2b4c928fc2447b38e91824df7 files/README.Gentoo 632
+AUX README.Gentoo 643 RMD160 7777b1b507126f9d7ac01a0fc39e4eceac2e0381 SHA1 431f528545f949ec8687175808bbdabcfbd8c60e SHA256 d8a737f2ca6e0366fcebb96fbc9e12200b6402fea4c4f71696f4d9175980dfbd
+MD5 862f7fb5e44d3c8fb2edef9dc6290770 files/README.Gentoo 643
+RMD160 7777b1b507126f9d7ac01a0fc39e4eceac2e0381 files/README.Gentoo 643
+SHA256 d8a737f2ca6e0366fcebb96fbc9e12200b6402fea4c4f71696f4d9175980dfbd files/README.Gentoo 643
 DIST phylip-3.65.tar.gz 1036976 RMD160 f47ba1bad6ec47e954ff16703c84fbe47e5c3f54 SHA1 6b8a0aaa374a5d6a35b2ab2eaefe3fd392318336 SHA256 8f8ab66a58dbe1fdf0b615c13b6d358d6c49195fbaeaabc6190253e895c0d528
 DIST phylip-3.66.tar.gz 1149878 RMD160 f6903257199cc1063ce557b32fb34b72ba170541 SHA1 fe618704ef46883eadddae7788db378f3863f510 SHA256 0fc6971f8f852191a30f8fa0b1f7bcb67e976f90aa2a01f9e97b7a07e06a2464
+DIST phylip-3.67.tar.gz 1467526 RMD160 5636707b2585077a793c71fa81f255dfd8708100 SHA1 7c2ef697250d7d78e2d0672af60190129ba10161 SHA256 089f31c0519b1af162628c02d4ff78570b42cd261f39b87c6406733f2f759b5d
 EBUILD phylip-3.65-r1.ebuild 1453 RMD160 0cafcc633077df8497e8cf5059183793037b11c0 SHA1 1b35f838f95d27b0aa0656f1e68f8bcdeed774f2 SHA256 410dc2a17c5fb2aea2651399617964b233e1602f7b5060795bbc71627e6ff8e9
 MD5 516198e64c8151fbf2995a7936ff6b90 phylip-3.65-r1.ebuild 1453
 RMD160 0cafcc633077df8497e8cf5059183793037b11c0 phylip-3.65-r1.ebuild 1453
@@ -12,10 +13,14 @@ EBUILD phylip-3.66.ebuild 1458 RMD160 b01862ee89f23e6bfe456fdd1bc9aa23ee00a105 S
 MD5 2d2b0c65193027e536108db10c1d463a phylip-3.66.ebuild 1458
 RMD160 b01862ee89f23e6bfe456fdd1bc9aa23ee00a105 phylip-3.66.ebuild 1458
 SHA256 ea3c6e968bedfa065c6568857962e31ae84779410f706e1877af5397d65e13af phylip-3.66.ebuild 1458
-MISC ChangeLog 4472 RMD160 cb70964f3724f8076a9bebbf9b8c2dd4dc5cf5ba SHA1 3ae52bf40a039b5afdc4cb6d75295cfb417883e0 SHA256 9ae01e3ba8798488af377f628e096893d85db5dbc29f8b10d14f3be9983efc06
-MD5 1f5607da3e6d0314027bbfda57afae4f ChangeLog 4472
-RMD160 cb70964f3724f8076a9bebbf9b8c2dd4dc5cf5ba ChangeLog 4472
-SHA256 9ae01e3ba8798488af377f628e096893d85db5dbc29f8b10d14f3be9983efc06 ChangeLog 4472
+EBUILD phylip-3.67.ebuild 1446 RMD160 7f170d1724eefeecc8025940aa7c232a2aca6ea1 SHA1 38882796d087acb21aa37c95ea0bac826e40c087 SHA256 dd82d63d1d52d396abd0526020a9ce26ca1bfe37d08cb1aa76733bb2d9ad6c8b
+MD5 258b51070fbdd34b3d04f4bebaf659fa phylip-3.67.ebuild 1446
+RMD160 7f170d1724eefeecc8025940aa7c232a2aca6ea1 phylip-3.67.ebuild 1446
+SHA256 dd82d63d1d52d396abd0526020a9ce26ca1bfe37d08cb1aa76733bb2d9ad6c8b phylip-3.67.ebuild 1446
+MISC ChangeLog 4728 RMD160 526ba398f7b42ecdceb8431eff349163bc2f5e8b SHA1 e6dc80e89da3bfdf143bd7bbc0279b2e7d1c4df4 SHA256 5545f0a5e5a4082ace9adf1f0cf331709a2f8c59650a254700493a001c0e6e86
+MD5 62a7b58a600056999b9255d39bcf72a7 ChangeLog 4728
+RMD160 526ba398f7b42ecdceb8431eff349163bc2f5e8b ChangeLog 4728
+SHA256 5545f0a5e5a4082ace9adf1f0cf331709a2f8c59650a254700493a001c0e6e86 ChangeLog 4728
 MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
 MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
@@ -26,3 +31,6 @@ SHA256 75f6b3497bced93007fa087693d8e11a31496114427206adbda770c7440109a9 files/di
 MD5 0e37adbd8974fce8a0698886ac6a7ae2 files/digest-phylip-3.66 238
 RMD160 2d0884b5c6a7ba4fdf356addb0697c79f2a6c4c3 files/digest-phylip-3.66 238
 SHA256 48e13f7415ff54c716d44cfce284886e109060c703644111c26f8bf5a2a12ae4 files/digest-phylip-3.66 238
+MD5 d8122f40d0ce1adc976685e2c79185a3 files/digest-phylip-3.67 238
+RMD160 b0b217354fe201c60e882a13d37dbbabe71f4e54 files/digest-phylip-3.67 238
+SHA256 ce408d6bb599d49741e59cbaabaa70adf3a066b880436084736780b722f2ca56 files/digest-phylip-3.67 238
diff --git a/sci-biology/phylip/files/README.Gentoo b/sci-biology/phylip/files/README.Gentoo
index 0598c1541631..3b2062003996 100644
--- a/sci-biology/phylip/files/README.Gentoo
+++ b/sci-biology/phylip/files/README.Gentoo
@@ -11,5 +11,5 @@ Location of the font files
 PHYLIP programs will find font files only if they are in a directory
 referenced by the "PATH" variable or if they are in the current working
 directory. When working with PHYLIP programs that need these files, either
-copy the fonts you need in your working directory, or add
+copy or symlink the fonts you need to your working directory, or add
 "/usr/share/phylip/fonts/" to your "PATH" variable.
diff --git a/sci-biology/phylip/files/digest-phylip-3.67 b/sci-biology/phylip/files/digest-phylip-3.67
new file mode 100644
index 000000000000..76116bc020d8
--- /dev/null
+++ b/sci-biology/phylip/files/digest-phylip-3.67
@@ -0,0 +1,3 @@
+MD5 625e45f3959fd1d2988f0f5f1704d3e5 phylip-3.67.tar.gz 1467526
+RMD160 5636707b2585077a793c71fa81f255dfd8708100 phylip-3.67.tar.gz 1467526
+SHA256 089f31c0519b1af162628c02d4ff78570b42cd261f39b87c6406733f2f759b5d phylip-3.67.tar.gz 1467526
diff --git a/sci-biology/phylip/phylip-3.67.ebuild b/sci-biology/phylip/phylip-3.67.ebuild
new file mode 100644
index 000000000000..aa146eb00325
--- /dev/null
+++ b/sci-biology/phylip/phylip-3.67.ebuild
@@ -0,0 +1,47 @@
+# Copyright 1999-2007 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/phylip/phylip-3.67.ebuild,v 1.1 2007/09/19 18:32:04 ribosome Exp $
+
+inherit toolchain-funcs
+
+DESCRIPTION="PHYLIP - The PHYLogeny Inference Package"
+LICENSE="freedist"
+HOMEPAGE="http://evolution.genetics.washington.edu/phylip.html"
+SRC_URI="http://evolution.gs.washington.edu/${PN}/download/${P}.tar.gz"
+
+SLOT="0"
+IUSE=""
+KEYWORDS="~ppc ~ppc-macos ~x86 ~amd64"
+
+RDEPEND="x11-libs/libXaw"
+
+DEPEND="${RDEPEND}
+	x11-proto/xproto"
+
+S="${WORKDIR}/${P}/src"
+
+src_compile() {
+	sed -e "s/CFLAGS  = -O3 -fomit-frame-pointer/CFLAGS = ${CFLAGS}/" \
+		-e "s/CC        = cc/CC        = $(tc-getCC)/" \
+		-e "s/DC        = cc/DC        = $(tc-getCC)/" \
+		-i Makefile || die "Patching Makefile failed."
+	mkdir ../fonts
+	emake -j1 all put || die "Compilation failed."
+	mv ../exe/font* ../fonts || die "Font move failed."
+	mv ../exe/factor ../exe/factor-${PN} || die "Renaming factor failed."
+}
+
+src_install() {
+	cd "${WORKDIR}/${P}"
+
+	dobin exe/* || "Failed to install programs."
+
+	dodoc "${FILESDIR}"/README.Gentoo || die "Failed to install Gentoo notes."
+
+	dohtml phylip.html || "Failed to install HTML documentation index."
+	insinto /usr/share/doc/${PF}/html/doc
+	doins doc/* || "Failed to install HTML documentation."
+
+	insinto /usr/share/${PN}/fonts
+	doins fonts/* || die "Fonts installation failed."
+}