Moved from app-sci/biopython to sci-biology/biopython.

13 files changed, 240 insertions, 0 deletions

diff --git a/sci-biology/biopython/ChangeLog b/sci-biology/biopython/ChangeLog
new file mode 100644
index 000000000000..8b7976e68461
--- /dev/null
+++ b/sci-biology/biopython/ChangeLog
@@ -0,0 +1,59 @@
+# ChangeLog for app-sci/biopython
+# Copyright 2002-2004 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.1 2004/12/23 22:16:34 ribosome Exp $
+
+*biopython-1.23 (23 Dec 2004)
+
+  23 Dec 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml,
+  +biopython-1.10.ebuild, +biopython-1.21.ebuild, +biopython-1.23.ebuild,
+  +biopython-1.24.ebuild, +biopython-1.30.ebuild:
+  Moved from app-sci/biopython to sci-biology/biopython.
+
+  13 Dec 2004; Jason Wever <weeve@gentoo.org> biopython-1.24.ebuild:
+  Stable on sparc.
+
+*biopython-1.30 (07 Oct 2004)
+
+  07 Oct 2004; George Shapovalvo <george@gentoo.org> biopython-1.30.ebuild :
+  new version (#51833)
+  amd64 has problems with KDTree, will try to look into this more later
+
+  05 May 2004; Bryan Østergaard <kloeri@gentoo.org> biopython-1.24.ebuild:
+  Stable on alpha.
+
+  03 Apr 2004; Peter Bienstman <pbienst@gentoo.org> biopython-1.24.ebuild:
+  Marked stable on x86
+
+*biopython-1.24 (29 Feb 2004)
+
+  29 Feb 2004; Peter Bienstman <pbienst@gentoo.org> biopython-1.24.ebuild :
+  version bump
+
+*biopython-1.23 (30 Dec 2003)
+
+  29 Feb 2004; Peter Bienstman <pbienst@gentoo.org> biopython-1.23.ebuild :
+  marked stable on x86
+
+  30 Dec 2003; George Shapovalvo <george@gentoo.org> biopython-1.23.ebuild :
+  new version, reworked to use distutils. Thanks to 
+  Peter Bienstman <Peter.Bienstman@rug.ac.be> for an update (#35727)
+
+  02 Sep 2003; Alastair Tse <liquidx@gentoo.org> biopython-1.10.ebuild,
+  biopython-1.21.ebuild:
+  moved dev-python/Numeric to dev-python/numeric
+
+*biopython-1.21 (08 Aug 2003)
+
+  08 Aug 2003; George Shapovalov <george@gentoo.org> biopython-1.21.ebuild :
+  new version, added few docs (#25428)
+  thanks to Daniel Jaeggi <daniel@jaeggi.co.uk> for notification
+
+  04 Jul 2003; Alastair Tse <liquidx@gentoo.org> biopython-1.10.ebuild:
+  renamed reportlab dep
+
+*biopython-1.10 (18 Feb 2003)
+
+  18 Feb 2003; George Shapovalov <george@gentoo.org> ChangeLog, biopython-1.10.ebuild, files/digest-biopython-1.10 :
+  initial release (#11617)
+  Biopython - python module for Computational Moelcular Biology
+  ebuild submitted by Daniel Jaeggi <daniel@jaeggi.co.uk>
diff --git a/sci-biology/biopython/Manifest b/sci-biology/biopython/Manifest
new file mode 100644
index 000000000000..0ca9f8710518
--- /dev/null
+++ b/sci-biology/biopython/Manifest
@@ -0,0 +1,12 @@
+MD5 ad5627e2c6070c72b3878731be65a4a9 ChangeLog 1902
+MD5 821788707f864dffce2a6cbd086ec19a biopython-1.10.ebuild 808
+MD5 64f5e7ece791b5004bf111d8ea6b1e66 biopython-1.21.ebuild 900
+MD5 ebd9935ad492f703e31fccbc90cc7133 biopython-1.23.ebuild 795
+MD5 49801c45bed7033965804aae19d530ea biopython-1.24.ebuild 790
+MD5 e52ec7d225835cda2c95c5317cdccfb4 metadata.xml 217
+MD5 4eac662e68aa34df443d7e4742d32dc8 biopython-1.30.ebuild 794
+MD5 8e719491da5d9664fddedbffc6af8f06 files/digest-biopython-1.10 67
+MD5 c54d7ea5347210ae92b5e01a346e2a21 files/digest-biopython-1.21 67
+MD5 3a482a8872b4342414ac1d59b7fee4ed files/digest-biopython-1.23 67
+MD5 aab085d47ad39d35d85a70db1e1aa89b files/digest-biopython-1.24 67
+MD5 a8b300aed93e9dbec0b14e657121d00e files/digest-biopython-1.30 67
diff --git a/sci-biology/biopython/biopython-1.10.ebuild b/sci-biology/biopython/biopython-1.10.ebuild
new file mode 100644
index 000000000000..e381b431a888
--- /dev/null
+++ b/sci-biology/biopython/biopython-1.10.ebuild
@@ -0,0 +1,30 @@
+# Copyright 1999-2004 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.10.ebuild,v 1.1 2004/12/23 22:16:34 ribosome Exp $
+
+IUSE=""
+
+DESCRIPTION="Biopython - python module for Computational Moelcular Biology"
+SRC_URI="http://www.biopython.org/files/${P}.tar.gz"
+HOMEPAGE="http://www.biopython.org"
+
+DEPEND=">=dev-lang/python-2.0
+		>=dev-python/egenix-mx-base-2.0.3
+		>=dev-python/numeric-19.0
+		>=dev-python/reportlab-1.11"
+
+SLOT="0"
+LICENSE="as-is"
+KEYWORDS="x86 ~ppc ~sparc ~alpha"
+
+src_compile() {
+	python setup.py build || die
+#	python setup.py test --no-gui || die
+}
+
+src_install() {
+	python setup.py install --prefix=${D}/usr || die
+
+	dodoc MANIFEST PKG-INFO README NEWS LICENSE CONTRIB
+	dodoc Doc/*
+}
diff --git a/sci-biology/biopython/biopython-1.21.ebuild b/sci-biology/biopython/biopython-1.21.ebuild
new file mode 100644
index 000000000000..7a8299f725fe
--- /dev/null
+++ b/sci-biology/biopython/biopython-1.21.ebuild
@@ -0,0 +1,32 @@
+# Copyright 1999-2004 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.21.ebuild,v 1.1 2004/12/23 22:16:34 ribosome Exp $
+
+IUSE=""
+
+DESCRIPTION="Biopython - python module for Computational Moelcular Biology"
+SRC_URI="http://www.biopython.org/files/${P}.tar.gz"
+HOMEPAGE="http://www.biopython.org"
+
+DEPEND=">=dev-lang/python-2.0
+		>=dev-python/egenix-mx-base-2.0.3
+		>=dev-python/numeric-19.0
+		>=dev-python/reportlab-1.11"
+
+SLOT="0"
+LICENSE="as-is"
+KEYWORDS="x86 ~ppc ~sparc ~alpha"
+
+src_compile() {
+	python setup.py build || die
+#	python setup.py test --no-gui || die
+}
+
+src_install() {
+	echo y | python setup.py install --prefix=${D}/usr || die
+
+	dodoc PKG-INFO README NEWS LICENSE CONTRIB
+	dodoc Doc/* Doc/install/*.txt
+	dohtml Doc/install/*.html
+	cp -r Doc/examples/ ${D}/usr/share/doc/${PF}/
+}
diff --git a/sci-biology/biopython/biopython-1.23.ebuild b/sci-biology/biopython/biopython-1.23.ebuild
new file mode 100644
index 000000000000..ba8acd01a4e8
--- /dev/null
+++ b/sci-biology/biopython/biopython-1.23.ebuild
@@ -0,0 +1,32 @@
+# Copyright 1999-2004 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.23.ebuild,v 1.1 2004/12/23 22:16:34 ribosome Exp $
+
+inherit distutils
+
+IUSE=""
+
+DESCRIPTION="Biopython - python modules for computational molecular biology"
+SRC_URI="http://www.biopython.org/files/${P}.tar.gz"
+HOMEPAGE="http://www.biopython.org"
+
+DEPEND=">=dev-lang/python-2.0
+		>=dev-python/egenix-mx-base-2.0.3
+		>=dev-python/numeric-19.0
+		>=dev-python/reportlab-1.11"
+
+SLOT="0"
+LICENSE="as-is"
+KEYWORDS="x86 ~ppc ~sparc ~alpha"
+
+src_compile() {
+	distutils_src_compile
+}
+
+src_install() {
+	DOCS="Doc/* Doc/install/*.txt"
+	distutils_src_install
+
+	dohtml Doc/install/*.html
+	cp -r Doc/examples/ ${D}/usr/share/doc/${PF}/
+}
diff --git a/sci-biology/biopython/biopython-1.24.ebuild b/sci-biology/biopython/biopython-1.24.ebuild
new file mode 100644
index 000000000000..c1c6ca16dc3d
--- /dev/null
+++ b/sci-biology/biopython/biopython-1.24.ebuild
@@ -0,0 +1,32 @@
+# Copyright 1999-2004 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.24.ebuild,v 1.1 2004/12/23 22:16:34 ribosome Exp $
+
+inherit distutils
+
+IUSE=""
+
+DESCRIPTION="Biopython - python modules for computational molecular biology"
+SRC_URI="http://www.biopython.org/files/${P}.tar.gz"
+HOMEPAGE="http://www.biopython.org"
+
+DEPEND=">=dev-lang/python-2.0
+		>=dev-python/egenix-mx-base-2.0.3
+		>=dev-python/numeric-19.0
+		>=dev-python/reportlab-1.11"
+
+SLOT="0"
+LICENSE="as-is"
+KEYWORDS="x86 ~ppc sparc alpha"
+
+src_compile() {
+	distutils_src_compile
+}
+
+src_install() {
+	DOCS="Doc/* Doc/install/*.txt"
+	distutils_src_install
+
+	dohtml Doc/install/*.html
+	cp -r Doc/examples/ ${D}/usr/share/doc/${PF}/
+}
diff --git a/sci-biology/biopython/biopython-1.30.ebuild b/sci-biology/biopython/biopython-1.30.ebuild
new file mode 100644
index 000000000000..f3c6516bc240
--- /dev/null
+++ b/sci-biology/biopython/biopython-1.30.ebuild
@@ -0,0 +1,32 @@
+# Copyright 1999-2004 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.30.ebuild,v 1.1 2004/12/23 22:16:34 ribosome Exp $
+
+inherit distutils
+
+IUSE=""
+
+DESCRIPTION="Biopython - python modules for computational molecular biology"
+SRC_URI="http://www.biopython.org/files/${P}.tar.gz"
+HOMEPAGE="http://www.biopython.org"
+
+DEPEND=">=dev-lang/python-2.2
+		>=dev-python/egenix-mx-base-2.0.3
+		>=dev-python/numeric-19.0
+		>=dev-python/reportlab-1.11"
+
+SLOT="0"
+LICENSE="as-is"
+KEYWORDS="~x86 ~ppc ~sparc ~alpha"
+
+src_compile() {
+	distutils_src_compile
+}
+
+src_install() {
+	DOCS="Doc/* Doc/install/*.txt"
+	distutils_src_install
+
+	dohtml Doc/install/*.html
+	cp -r Doc/examples/ ${D}/usr/share/doc/${PF}/
+}
diff --git a/sci-biology/biopython/files/digest-biopython-1.10 b/sci-biology/biopython/files/digest-biopython-1.10
new file mode 100644
index 000000000000..2c9275b77026
--- /dev/null
+++ b/sci-biology/biopython/files/digest-biopython-1.10
@@ -0,0 +1 @@
+MD5 be77d0408d72703a7f6c69c71050f3f8 biopython-1.10.tar.gz 1811239
diff --git a/sci-biology/biopython/files/digest-biopython-1.21 b/sci-biology/biopython/files/digest-biopython-1.21
new file mode 100644
index 000000000000..f70b75933970
--- /dev/null
+++ b/sci-biology/biopython/files/digest-biopython-1.21
@@ -0,0 +1 @@
+MD5 8a27104790cb7fbd9cf4e94c84a27e0b biopython-1.21.tar.gz 2214464
diff --git a/sci-biology/biopython/files/digest-biopython-1.23 b/sci-biology/biopython/files/digest-biopython-1.23
new file mode 100644
index 000000000000..72f729c48557
--- /dev/null
+++ b/sci-biology/biopython/files/digest-biopython-1.23
@@ -0,0 +1 @@
+MD5 45ea628621c6b04d471f029ef5873aaf biopython-1.23.tar.gz 2241300
diff --git a/sci-biology/biopython/files/digest-biopython-1.24 b/sci-biology/biopython/files/digest-biopython-1.24
new file mode 100644
index 000000000000..b45428c9dafc
--- /dev/null
+++ b/sci-biology/biopython/files/digest-biopython-1.24
@@ -0,0 +1 @@
+MD5 518aff1d15d01656f63b243739d6d5d3 biopython-1.24.tar.gz 3081227
diff --git a/sci-biology/biopython/files/digest-biopython-1.30 b/sci-biology/biopython/files/digest-biopython-1.30
new file mode 100644
index 000000000000..53251dcebf82
--- /dev/null
+++ b/sci-biology/biopython/files/digest-biopython-1.30
@@ -0,0 +1 @@
+MD5 d8df866a40be20962b8ef52baa5376c1 biopython-1.30.tar.gz 3186467
diff --git a/sci-biology/biopython/metadata.xml b/sci-biology/biopython/metadata.xml
new file mode 100644
index 000000000000..ded1d292947f
--- /dev/null
+++ b/sci-biology/biopython/metadata.xml
@@ -0,0 +1,6 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>python</herd>
+<maintainer><email>george@gentoo.org</email></maintainer>
+</pkgmetadata>