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author | Olivier Fisette <ribosome@gentoo.org> | 2004-10-06 12:35:01 +0000 |
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committer | Olivier Fisette <ribosome@gentoo.org> | 2004-10-06 12:35:01 +0000 |
commit | e7c05f919d0ee6127fb96c9d30c86f654ae82991 (patch) | |
tree | af86b2e584fffed83ebaf1ef0266f545d7a08422 /app-sci | |
parent | Requires eimil-${PV} (diff) | |
download | historical-e7c05f919d0ee6127fb96c9d30c86f654ae82991.tar.gz historical-e7c05f919d0ee6127fb96c9d30c86f654ae82991.tar.bz2 historical-e7c05f919d0ee6127fb96c9d30c86f654ae82991.zip |
Initial import.
Diffstat (limited to 'app-sci')
-rw-r--r-- | app-sci/clustalx/ChangeLog | 10 | ||||
-rw-r--r-- | app-sci/clustalx/Manifest | 4 | ||||
-rw-r--r-- | app-sci/clustalx/clustalx-1.83.ebuild | 45 | ||||
-rw-r--r-- | app-sci/clustalx/files/digest-clustalx-1.83 | 1 | ||||
-rw-r--r-- | app-sci/clustalx/metadata.xml | 14 |
5 files changed, 74 insertions, 0 deletions
diff --git a/app-sci/clustalx/ChangeLog b/app-sci/clustalx/ChangeLog new file mode 100644 index 000000000000..3f1261550014 --- /dev/null +++ b/app-sci/clustalx/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for app-sci/clustalx +# Copyright 1999-2004 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/app-sci/clustalx/ChangeLog,v 1.1 2004/10/06 12:35:01 ribosome Exp $ + +*clustalx-1.83 (06 Oct 2004) + + 06 Oct 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml, + +clustalx-1.83.ebuild: + Initial import. + diff --git a/app-sci/clustalx/Manifest b/app-sci/clustalx/Manifest new file mode 100644 index 000000000000..2f97ebb53f65 --- /dev/null +++ b/app-sci/clustalx/Manifest @@ -0,0 +1,4 @@ +MD5 bd3f96653c6304c74d22b12c46717fbe ChangeLog 349 +MD5 272b5b012593acd07a7a60b8b64e6761 metadata.xml 509 +MD5 26415156630b11a4137d00790f30ecf5 clustalx-1.83.ebuild 1316 +MD5 800c4da737d4fb9af3d8ffb7f6f44892 files/digest-clustalx-1.83 68 diff --git a/app-sci/clustalx/clustalx-1.83.ebuild b/app-sci/clustalx/clustalx-1.83.ebuild new file mode 100644 index 000000000000..74af4b33cabf --- /dev/null +++ b/app-sci/clustalx/clustalx-1.83.ebuild @@ -0,0 +1,45 @@ +# Copyright 1999-2004 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/app-sci/clustalx/clustalx-1.83.ebuild,v 1.1 2004/10/06 12:35:01 ribosome Exp $ + +DESCRIPTION="Graphical interface for the ClustalW multiple alignment program" +HOMEPAGE="http://www-igbmc.u-strasbg.fr/BioInfo/ClustalX/" +SRC_URI="ftp://ftp-igbmc.u-strasbg.fr/pub/ClustalX/clustalx1.83.sun.tar.gz" +LICENSE="public-domain" + +SLOT="0" +KEYWORDS="~x86" +IUSE="" + +DEPEND="app-sci/ncbi-tools + app-sci/clustalw + virtual/x11" + +S="${WORKDIR}/${PN}${PV}.sun" + +src_unpack() { + unpack ${A} + cd ${S} + cp makefile.linux makefile + sed -i -e "s/CC = cc/CC = ${CC:gcc}/" makefile + sed -i -e "s/CFLAGS = -c -O/CFLAGS = -c ${CFLAGS}/" makefile + sed -i -e "s/LFLAGS = -O -lm/LFLAGS = -lm ${CFLAGS}/" makefile + sed -i -e "s%-I/usr/bio/src/ncbi/include%-I/usr/include/ncbi%" makefile + sed -i -e "s%-L/usr/bio/src/ncbi/lib -L/usr/ccs/lib -L/usr/X11R6/lib%-L/usr/lib -L/usr/X11R6/lib%" makefile + sed -i -e "s%clustalx_help%/usr/share/doc/${PF}/clustalx_help%" clustalx.c + sed -i -e "s%clustalw.doc%../clustalw.doc%" clustalx.html +} + +src_compile() { + make || die +} + +src_install() { + dobin clustalx + + dodoc README_X + dohtml clustalx.html + + insinto /usr/share/doc/${PF} + doins clustalx_help clustalw.doc +} diff --git a/app-sci/clustalx/files/digest-clustalx-1.83 b/app-sci/clustalx/files/digest-clustalx-1.83 new file mode 100644 index 000000000000..9d0832e69fb6 --- /dev/null +++ b/app-sci/clustalx/files/digest-clustalx-1.83 @@ -0,0 +1 @@ +MD5 732538fe5fea04f4d5dd665e84c3b9ab clustalx1.83.sun.tar.gz 860205 diff --git a/app-sci/clustalx/metadata.xml b/app-sci/clustalx/metadata.xml new file mode 100644 index 000000000000..8ce831f76510 --- /dev/null +++ b/app-sci/clustalx/metadata.xml @@ -0,0 +1,14 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer> + <email>ribosome@gentoo.org</email> + <name>Olivier Fisette</name> + </maintainer> + <herd>sci</herd> + <longdescription> + Clustal X is a graphical interface for the ClustalW multiple sequence + alignment program. It provides an integrated environment for performing + multiple sequence and profile alignments and analysing the results. + </longdescription> +</pkgmetadata> |