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authorOlivier Fisette <ribosome@gentoo.org>2004-10-06 12:35:01 +0000
committerOlivier Fisette <ribosome@gentoo.org>2004-10-06 12:35:01 +0000
commite7c05f919d0ee6127fb96c9d30c86f654ae82991 (patch)
treeaf86b2e584fffed83ebaf1ef0266f545d7a08422 /app-sci
parentRequires eimil-${PV} (diff)
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Initial import.
Diffstat (limited to 'app-sci')
-rw-r--r--app-sci/clustalx/ChangeLog10
-rw-r--r--app-sci/clustalx/Manifest4
-rw-r--r--app-sci/clustalx/clustalx-1.83.ebuild45
-rw-r--r--app-sci/clustalx/files/digest-clustalx-1.831
-rw-r--r--app-sci/clustalx/metadata.xml14
5 files changed, 74 insertions, 0 deletions
diff --git a/app-sci/clustalx/ChangeLog b/app-sci/clustalx/ChangeLog
new file mode 100644
index 000000000000..3f1261550014
--- /dev/null
+++ b/app-sci/clustalx/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for app-sci/clustalx
+# Copyright 1999-2004 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/app-sci/clustalx/ChangeLog,v 1.1 2004/10/06 12:35:01 ribosome Exp $
+
+*clustalx-1.83 (06 Oct 2004)
+
+ 06 Oct 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml,
+ +clustalx-1.83.ebuild:
+ Initial import.
+
diff --git a/app-sci/clustalx/Manifest b/app-sci/clustalx/Manifest
new file mode 100644
index 000000000000..2f97ebb53f65
--- /dev/null
+++ b/app-sci/clustalx/Manifest
@@ -0,0 +1,4 @@
+MD5 bd3f96653c6304c74d22b12c46717fbe ChangeLog 349
+MD5 272b5b012593acd07a7a60b8b64e6761 metadata.xml 509
+MD5 26415156630b11a4137d00790f30ecf5 clustalx-1.83.ebuild 1316
+MD5 800c4da737d4fb9af3d8ffb7f6f44892 files/digest-clustalx-1.83 68
diff --git a/app-sci/clustalx/clustalx-1.83.ebuild b/app-sci/clustalx/clustalx-1.83.ebuild
new file mode 100644
index 000000000000..74af4b33cabf
--- /dev/null
+++ b/app-sci/clustalx/clustalx-1.83.ebuild
@@ -0,0 +1,45 @@
+# Copyright 1999-2004 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/app-sci/clustalx/clustalx-1.83.ebuild,v 1.1 2004/10/06 12:35:01 ribosome Exp $
+
+DESCRIPTION="Graphical interface for the ClustalW multiple alignment program"
+HOMEPAGE="http://www-igbmc.u-strasbg.fr/BioInfo/ClustalX/"
+SRC_URI="ftp://ftp-igbmc.u-strasbg.fr/pub/ClustalX/clustalx1.83.sun.tar.gz"
+LICENSE="public-domain"
+
+SLOT="0"
+KEYWORDS="~x86"
+IUSE=""
+
+DEPEND="app-sci/ncbi-tools
+ app-sci/clustalw
+ virtual/x11"
+
+S="${WORKDIR}/${PN}${PV}.sun"
+
+src_unpack() {
+ unpack ${A}
+ cd ${S}
+ cp makefile.linux makefile
+ sed -i -e "s/CC = cc/CC = ${CC:gcc}/" makefile
+ sed -i -e "s/CFLAGS = -c -O/CFLAGS = -c ${CFLAGS}/" makefile
+ sed -i -e "s/LFLAGS = -O -lm/LFLAGS = -lm ${CFLAGS}/" makefile
+ sed -i -e "s%-I/usr/bio/src/ncbi/include%-I/usr/include/ncbi%" makefile
+ sed -i -e "s%-L/usr/bio/src/ncbi/lib -L/usr/ccs/lib -L/usr/X11R6/lib%-L/usr/lib -L/usr/X11R6/lib%" makefile
+ sed -i -e "s%clustalx_help%/usr/share/doc/${PF}/clustalx_help%" clustalx.c
+ sed -i -e "s%clustalw.doc%../clustalw.doc%" clustalx.html
+}
+
+src_compile() {
+ make || die
+}
+
+src_install() {
+ dobin clustalx
+
+ dodoc README_X
+ dohtml clustalx.html
+
+ insinto /usr/share/doc/${PF}
+ doins clustalx_help clustalw.doc
+}
diff --git a/app-sci/clustalx/files/digest-clustalx-1.83 b/app-sci/clustalx/files/digest-clustalx-1.83
new file mode 100644
index 000000000000..9d0832e69fb6
--- /dev/null
+++ b/app-sci/clustalx/files/digest-clustalx-1.83
@@ -0,0 +1 @@
+MD5 732538fe5fea04f4d5dd665e84c3b9ab clustalx1.83.sun.tar.gz 860205
diff --git a/app-sci/clustalx/metadata.xml b/app-sci/clustalx/metadata.xml
new file mode 100644
index 000000000000..8ce831f76510
--- /dev/null
+++ b/app-sci/clustalx/metadata.xml
@@ -0,0 +1,14 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <maintainer>
+ <email>ribosome@gentoo.org</email>
+ <name>Olivier Fisette</name>
+ </maintainer>
+ <herd>sci</herd>
+ <longdescription>
+ Clustal X is a graphical interface for the ClustalW multiple sequence
+ alignment program. It provides an integrated environment for performing
+ multiple sequence and profile alignments and analysing the results.
+ </longdescription>
+</pkgmetadata>