Initial import for app-sci/prosite

5 files changed, 85 insertions, 0 deletions

diff --git a/app-sci/prosite/ChangeLog b/app-sci/prosite/ChangeLog
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index 000000000000..649e073eea61
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+# ChangeLog for app-sci/prosite
+# Copyright 2000-2004 Gentoo Technologies, Inc.; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/app-sci/prosite/ChangeLog,v 1.1 2004/06/25 03:36:40 ribosome Exp $
+
+*prosite-18.26 (24 Jun 2004)
+
+  24 Jun 2004; Olivier Fisette <ribosome@gentoo.org>
+  prosite-18.26.ebuild, metadata.xml :
+  Initial import.  Ebuild submitted by Olivier Fisette <ribosome@gentoo.org>.
+  Reference: Gentoo Bugzilla, bug #54326
+
diff --git a/app-sci/prosite/files/digest-prosite-18.26 b/app-sci/prosite/files/digest-prosite-18.26
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index 000000000000..b0f5f91e6df7
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+++ b/app-sci/prosite/files/digest-prosite-18.26
@@ -0,0 +1,5 @@
+MD5 d7f986c371db0b9d9ea1f451ce9dd8b1 prosite.doc 3468626
+MD5 6c36d1fb0aba90fbdea5dfd9def782a4 prosite.lis 66021
+MD5 8353beb7a496d0a58f33e49be266caec prosite.dat 7493260
+MD5 b2c9581917ecfd43826d319d066e4ca7 prosuser.htm 53466
+MD5 f6536345a4ae9e16b68cba7e9b7c6755 prosuser.txt 45552
diff --git a/app-sci/prosite/metadata.xml b/app-sci/prosite/metadata.xml
new file mode 100644
index 000000000000..bd408926e90a
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+++ b/app-sci/prosite/metadata.xml
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+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer>
+		<email>ribosome@gentoo.org</email>
+		<name>Olivier Fisette</name>
+	</maintainer>
+	<herd>sci</herd>
+	<longdescription>
+		A protein families and domains database maintained at the Swiss
+		Institude for Bioinformatics. It consists of biologically significant
+		sites, patterns and profiles that help to reliably identify to which
+		known protein family (if any) a new sequence belongs. PROSITE currently
+		contains patterns and profiles specific for more than a thousand
+		protein families or domains. Each of these signatures comes with
+		documentation providing background information on the structure and
+		function of these proteins.
+	</longdescription>
+</pkgmetadata>
diff --git a/app-sci/prosite/prosite-18.26.ebuild b/app-sci/prosite/prosite-18.26.ebuild
new file mode 100644
index 000000000000..9adefbaf69fe
--- /dev/null
+++ b/app-sci/prosite/prosite-18.26.ebuild
@@ -0,0 +1,46 @@
+# Copyright 1999-2004 Gentoo Technologies, Inc.
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/app-sci/prosite/prosite-18.26.ebuild,v 1.1 2004/06/25 03:36:40 ribosome Exp $
+
+DESCRIPTION="A protein families and domains database"
+HOMEPAGE="http://ca.expasy.org/${PN}"
+SRC_URI="ftp://ca.expasy.org/databases/${PN}/release/${PN}.doc \
+	ftp://ca.expasy.org/databases/${PN}/release/${PN}.lis \
+	ftp://ca.expasy.org/databases/${PN}/release/${PN}.dat \
+	ftp://ca.expasy.org/databases/${PN}/release/prosuser.htm \
+	ftp://ca.expasy.org/databases/${PN}/release/prosuser.txt"
+LICENSE="swiss-prot"
+SLOT="0"
+KEYWORDS="~x86"
+IUSE="no-emboss no-rawdb"
+
+S=${WORKDIR}
+
+src_unpack() {
+	einfo "No archive to unpack."
+}
+
+src_compile() {
+	# Index the database for use with emboss if emboss is installed and
+	# the user did not explicitly request not to index the database.
+	if [ -e /usr/bin/prosextract ] && ! use no-emboss; then
+		mkdir PROSITE
+		einfo "Indexing PROSITE for usage with EMBOSS."
+		EMBOSS_DATA=. prosextract -auto -infdat ${DISTDIR} || die \
+			"Indexing PROSITE failed."
+	fi
+}
+
+
+src_install() {
+	if ! use no-rawdb; then
+		insinto /usr/share/${PN}
+		doins ${DISTDIR}/${PN}.{doc,dat,lis}
+	fi
+	dodoc ${DISTDIR}/prosuser.txt
+	dohtml ${DISTDIR}/prosuser.htm
+	if [ -e /usr/bin/prosextract ] && ! use no-emboss; then
+		insinto /usr/share/EMBOSS/data/PROSITE
+		doins PROSITE/*
+	fi
+}
diff --git a/app-sci/rebase/Manifest b/app-sci/rebase/Manifest
new file mode 100644
index 000000000000..f702de169ca8
--- /dev/null
+++ b/app-sci/rebase/Manifest
@@ -0,0 +1,4 @@
+MD5 4657c142e469207851f1d02cb08964f1 rebase-406.ebuild 1332
+MD5 3a281458e5fc268b723ef8c4ce5c38f8 ChangeLog 447
+MD5 550f8d428f3e75690b43d32df6aa60cd metadata.xml 900
+MD5 5c893447661466e2d82999d79bb60324 files/digest-rebase-406 165