Remove all old-style digests from the system and regen the Manifest files.

172 files changed, 0 insertions, 1722 deletions

diff --git a/sci-biology/aaindex/Manifest b/sci-biology/aaindex/Manifest
index 766ef78b08f0..af3befc3696b 100644
--- a/sci-biology/aaindex/Manifest
+++ b/sci-biology/aaindex/Manifest
@@ -1,16 +1,4 @@
 DIST aaindex-9.1.tar.bz2 133780 RMD160 6f5bd699de3c84bd366f9747f57712ba8aecf513 SHA1 7215e3dae85cd61919854ba5dd5abff29be91852 SHA256 ae2e5aec2fc47835f26c8d8b5776966464bc08a5fca422c130d8312880382caa
 EBUILD aaindex-9.1.ebuild 1165 RMD160 b2ccf34b9a5782992d2e250a7c8d452b61e9813b SHA1 b99d748b7d4ec67809f33b46ca548199fd536281 SHA256 663cb10214f3681665a66c5e4c942031508c2a79557cbac013773bcbfda3822d
-MD5 8dd03fe95e5c9045bf229e9750adc0af aaindex-9.1.ebuild 1165
-RMD160 b2ccf34b9a5782992d2e250a7c8d452b61e9813b aaindex-9.1.ebuild 1165
-SHA256 663cb10214f3681665a66c5e4c942031508c2a79557cbac013773bcbfda3822d aaindex-9.1.ebuild 1165
 MISC ChangeLog 3036 RMD160 5f82268ae4694568690c06640358c8decf93dc0d SHA1 768f475d6f5955b2ca4794ef0271071515c44269 SHA256 b0845e6925e6bd15197a57420d5dff92825919302148b5d186e1332d03735504
-MD5 a7e597720e3063d01ed74f7417360dd8 ChangeLog 3036
-RMD160 5f82268ae4694568690c06640358c8decf93dc0d ChangeLog 3036
-SHA256 b0845e6925e6bd15197a57420d5dff92825919302148b5d186e1332d03735504 ChangeLog 3036
 MISC metadata.xml 1318 RMD160 06733e015e5bea1426d341a5510982f4692da97c SHA1 14d3ef2a711c44b92d0801e1f5ce429e59fbfbf0 SHA256 7ae3adabe021a43e4abedd68d24352718b3d0eca66433d96c700ecfffc091207
-MD5 7b4367ee8d5bb22caff546e4ae7d99c4 metadata.xml 1318
-RMD160 06733e015e5bea1426d341a5510982f4692da97c metadata.xml 1318
-SHA256 7ae3adabe021a43e4abedd68d24352718b3d0eca66433d96c700ecfffc091207 metadata.xml 1318
-MD5 7b841c73bc8f99650a8ba6fab51739cb files/digest-aaindex-9.1 238
-RMD160 cd4dd9a4a88c102c672c93a6200b3e2fb2340c62 files/digest-aaindex-9.1 238
-SHA256 ae955fc9a9a798abf186eee38e8e3b8d0122a02ea0ce46efa7786246e526e82d files/digest-aaindex-9.1 238
diff --git a/sci-biology/aaindex/files/digest-aaindex-9.1 b/sci-biology/aaindex/files/digest-aaindex-9.1
deleted file mode 100644
index 0577048a761a..000000000000
--- a/sci-biology/aaindex/files/digest-aaindex-9.1
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 efed99751665ce4f60bcbe890c06520c aaindex-9.1.tar.bz2 133780
-RMD160 6f5bd699de3c84bd366f9747f57712ba8aecf513 aaindex-9.1.tar.bz2 133780
-SHA256 ae2e5aec2fc47835f26c8d8b5776966464bc08a5fca422c130d8312880382caa aaindex-9.1.tar.bz2 133780
diff --git a/sci-biology/amap/Manifest b/sci-biology/amap/Manifest
index 13aa017223ad..e28bc2f58e1a 100644
--- a/sci-biology/amap/Manifest
+++ b/sci-biology/amap/Manifest
@@ -1,32 +1,8 @@
 AUX 2.0-fix-cxxflags.patch 835 RMD160 d31c598e91e58ada05320f8c536a2b61c4d50f5d SHA1 42911d9882e4c359f68e318fe65efb9f877fb680 SHA256 fe3e568f785d1d4ee28deeb62cba28aa700066bab7d41828c84d9fcc612fff4e
-MD5 76ed725e190bde137cbee78a6d4771ce files/2.0-fix-cxxflags.patch 835
-RMD160 d31c598e91e58ada05320f8c536a2b61c4d50f5d files/2.0-fix-cxxflags.patch 835
-SHA256 fe3e568f785d1d4ee28deeb62cba28aa700066bab7d41828c84d9fcc612fff4e files/2.0-fix-cxxflags.patch 835
 AUX 2.1-fix-cxxflags.patch 882 RMD160 003609b0c9ad3c74c28fa4f7be83ee24512b5722 SHA1 193671beb78a2ac6e7db037d782d7228dec1e23b SHA256 f2e9edef582eae51762703be4d34dcf6b760fecbcd338883efc926b120506a01
-MD5 ac9e3c05c3bd30dcbc86c550fb4ea986 files/2.1-fix-cxxflags.patch 882
-RMD160 003609b0c9ad3c74c28fa4f7be83ee24512b5722 files/2.1-fix-cxxflags.patch 882
-SHA256 f2e9edef582eae51762703be4d34dcf6b760fecbcd338883efc926b120506a01 files/2.1-fix-cxxflags.patch 882
 DIST amap.2.0.tar.gz 42389 RMD160 1577da7c930dc72aadda095b24107f933bde4006 SHA1 9a6c083e868ae85ae177445d284dd4c54422e4ef SHA256 3930c4b5d149f01277bc6de2339c5f058d7d2ca36f69f328f1dac2f1a4b5ba92
 DIST amap.2.1.tar.gz 103301 RMD160 b8ade9699c0fa81100ebce8cbb3d0f812ba80824 SHA1 4addca6e9f19392d33b35e080e8004dba44f9854 SHA256 3040968f318b7856624361e53017fe84ae706aa6f2702cea1d29646fd378df38
 EBUILD amap-2.0.ebuild 802 RMD160 f18976169ccd0f9e9b3cf451bfb9050bd8cd1ad4 SHA1 307ff9955bcda4c041c147c43376d5b9d4d3523e SHA256 d579540cf8279214386ef0f0982d9a159d217ebe2a1ba0c14a3f27cead90a7e0
-MD5 c3f5e836c66de88223f0fee5ae8b13e1 amap-2.0.ebuild 802
-RMD160 f18976169ccd0f9e9b3cf451bfb9050bd8cd1ad4 amap-2.0.ebuild 802
-SHA256 d579540cf8279214386ef0f0982d9a159d217ebe2a1ba0c14a3f27cead90a7e0 amap-2.0.ebuild 802
 EBUILD amap-2.1.ebuild 935 RMD160 d194391d9afafeb37c7c1944417be7950d0416de SHA1 c529d3a27834172ce45fc2bb2b1200afe50bf25d SHA256 c1462f7fbd47b3f189e6b76f7b308adc6787e64413d15a1ebc370710e7902ce9
-MD5 3c052936e7106356c2f5f1ca46a7d0bc amap-2.1.ebuild 935
-RMD160 d194391d9afafeb37c7c1944417be7950d0416de amap-2.1.ebuild 935
-SHA256 c1462f7fbd47b3f189e6b76f7b308adc6787e64413d15a1ebc370710e7902ce9 amap-2.1.ebuild 935
 MISC ChangeLog 672 RMD160 98d0c9302518dbba84ab6e78847dded5fece88e3 SHA1 5fd078b77a8475dd5ad297ed99b9320e4396b2d1 SHA256 2e938044da472c0e53fb7be3ad0057e8a49f134d7958c63335549304541ba17f
-MD5 2cfcbf02594a2769f71ca3af85ba8661 ChangeLog 672
-RMD160 98d0c9302518dbba84ab6e78847dded5fece88e3 ChangeLog 672
-SHA256 2e938044da472c0e53fb7be3ad0057e8a49f134d7958c63335549304541ba17f ChangeLog 672
 MISC metadata.xml 164 RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c SHA1 61a50baedfd041e663d6c2a41a28b57e22dbb6de SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f
-MD5 86813ca8050bc98ba326cb74e88150a5 metadata.xml 164
-RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c metadata.xml 164
-SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f metadata.xml 164
-MD5 5510a75e0abff7dfa6adbe1826614057 files/digest-amap-2.0 223
-RMD160 1b902d1cc9581642a5f47f234de94e2fd5831ab2 files/digest-amap-2.0 223
-SHA256 8c039a4dfb9875f4ca84bb6c15037c6d94a8ac00e20e545f60f1a4eef14cbc93 files/digest-amap-2.0 223
-MD5 c24abce0eba9aae893495d303d2d6a3b files/digest-amap-2.1 226
-RMD160 4fde2224914436a43add959ee980306f831d1170 files/digest-amap-2.1 226
-SHA256 d0e824f3f90bdc8d6b2ab5842099c07d6739857295d0911ad9e98a7731bfb20f files/digest-amap-2.1 226
diff --git a/sci-biology/amap/files/digest-amap-2.0 b/sci-biology/amap/files/digest-amap-2.0
deleted file mode 100644
index 59ec2916475a..000000000000
--- a/sci-biology/amap/files/digest-amap-2.0
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 48a82988891f210d51f406fb9177f23d amap.2.0.tar.gz 42389
-RMD160 1577da7c930dc72aadda095b24107f933bde4006 amap.2.0.tar.gz 42389
-SHA256 3930c4b5d149f01277bc6de2339c5f058d7d2ca36f69f328f1dac2f1a4b5ba92 amap.2.0.tar.gz 42389
diff --git a/sci-biology/amap/files/digest-amap-2.1 b/sci-biology/amap/files/digest-amap-2.1
deleted file mode 100644
index 040f002c0e85..000000000000
--- a/sci-biology/amap/files/digest-amap-2.1
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 a37ef3431c45c71ec48200e70c837ad0 amap.2.1.tar.gz 103301
-RMD160 b8ade9699c0fa81100ebce8cbb3d0f812ba80824 amap.2.1.tar.gz 103301
-SHA256 3040968f318b7856624361e53017fe84ae706aa6f2702cea1d29646fd378df38 amap.2.1.tar.gz 103301
diff --git a/sci-biology/ariadne/Manifest b/sci-biology/ariadne/Manifest
index 7f3ea1fcfab6..c1ba66fd887e 100644
--- a/sci-biology/ariadne/Manifest
+++ b/sci-biology/ariadne/Manifest
@@ -1,30 +1,5 @@
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
-
 AUX ariadne-1.3-gcc4.patch 279 RMD160 c36395250c0791d9db6f6b05eb7fee976a3bb553 SHA1 3e383d49b7bbac276a4821e235cc79d396e06b1c SHA256 4d5d273beb35d28d8d15311c98f928c77ccb4ca78d537cecae8563cddb7d9fcd
-MD5 85fea40cfa602b59790ef65c90cd23b6 files/ariadne-1.3-gcc4.patch 279
-RMD160 c36395250c0791d9db6f6b05eb7fee976a3bb553 files/ariadne-1.3-gcc4.patch 279
-SHA256 4d5d273beb35d28d8d15311c98f928c77ccb4ca78d537cecae8563cddb7d9fcd files/ariadne-1.3-gcc4.patch 279
 DIST ariadne-1.3.tar.Z 69427 RMD160 084b40d38346f2cd5e99a9c49aeee303fe591805 SHA1 ff1886c0d7ac547cdece5cde50b531e878918afd SHA256 8b6b0acb6e8d02b1303d94b20906bf2bf1dee3de4eceeb1b927cfba7a96fd00d
 EBUILD ariadne-1.3-r1.ebuild 937 RMD160 6b79136a61bcdf81948c210384a11d0dfaaf411e SHA1 aba17b3f797911bb312b34294cabc9d905c6c3fc SHA256 bc6387f67499adff076df1e3cd2aed5cd0144e98b80405967e7eb487e38d9a1a
-MD5 d0717b49d9ab43b103ab1b5896aa5321 ariadne-1.3-r1.ebuild 937
-RMD160 6b79136a61bcdf81948c210384a11d0dfaaf411e ariadne-1.3-r1.ebuild 937
-SHA256 bc6387f67499adff076df1e3cd2aed5cd0144e98b80405967e7eb487e38d9a1a ariadne-1.3-r1.ebuild 937
 MISC ChangeLog 1354 RMD160 2d284d2af2d3866f0499808b02d67121e947dd27 SHA1 3daeac9f0e0c56c2e75aa6132f3ff84383f02f17 SHA256 ddf4a9e1e3024758551c4e15e5733b9a2c3cae0765e93b2fea5a3f7389f27e01
-MD5 65a7cebb061c14944999b8cad1f4f6c0 ChangeLog 1354
-RMD160 2d284d2af2d3866f0499808b02d67121e947dd27 ChangeLog 1354
-SHA256 ddf4a9e1e3024758551c4e15e5733b9a2c3cae0765e93b2fea5a3f7389f27e01 ChangeLog 1354
 MISC metadata.xml 858 RMD160 70c593695266c020ed15c8fa22e28e977543d30a SHA1 bb899131813b051b33caab2269ab1e432b196d12 SHA256 5b9caa5d4bcdaf27c0e6053805351e6e4450da667d352a629befbb8f50c325ab
-MD5 a764cd7a26fdbcf7cd9906c5c28d2f86 metadata.xml 858
-RMD160 70c593695266c020ed15c8fa22e28e977543d30a metadata.xml 858
-SHA256 5b9caa5d4bcdaf27c0e6053805351e6e4450da667d352a629befbb8f50c325ab metadata.xml 858
-MD5 e4a2028b247fdd6ee5c3a079f17e7bd0 files/digest-ariadne-1.3-r1 229
-RMD160 08102c194fc7bf3f300b43eba4cf7aa20a5fda7b files/digest-ariadne-1.3-r1 229
-SHA256 dc5464498d8cf0691885ecfab0fa2789e2769cd22b4fabf5670859eaa8b61d02 files/digest-ariadne-1.3-r1 229
------BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.1 (GNU/Linux)
-
-iD8DBQFGBdfM5mJXAu5GbtIRAphVAJ9TCZXmYvEGm8Pit9BoIBZlZ7QvIwCfRe9y
-qvPEEVmHY759JM2FIKLKI9Q=
-=t7uM
------END PGP SIGNATURE-----
diff --git a/sci-biology/ariadne/files/digest-ariadne-1.3-r1 b/sci-biology/ariadne/files/digest-ariadne-1.3-r1
deleted file mode 100644
index a3d3b57a8e69..000000000000
--- a/sci-biology/ariadne/files/digest-ariadne-1.3-r1
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 240dc8b278a02b0fcdf56cd186d9b0ec ariadne-1.3.tar.Z 69427
-RMD160 084b40d38346f2cd5e99a9c49aeee303fe591805 ariadne-1.3.tar.Z 69427
-SHA256 8b6b0acb6e8d02b1303d94b20906bf2bf1dee3de4eceeb1b927cfba7a96fd00d ariadne-1.3.tar.Z 69427
diff --git a/sci-biology/bioperl-run/Manifest b/sci-biology/bioperl-run/Manifest
index 92be18922348..b030d93f0eb8 100644
--- a/sci-biology/bioperl-run/Manifest
+++ b/sci-biology/bioperl-run/Manifest
@@ -1,38 +1,7 @@
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
-
 AUX bioperl-run-Pise-test-patch.diff 722 RMD160 85c3744bfc14db91971e4df2dfd967c5ad9f0310 SHA1 0498546ae9f12d0db5194c41a360910833870eac SHA256 84c8280f8d3af311b53c8b6edd4e6ffa9acc0824528d96d7f1c2537404d3e30f
-MD5 21ad123058f1e670f289ee1a87de4e82 files/bioperl-run-Pise-test-patch.diff 722
-RMD160 85c3744bfc14db91971e4df2dfd967c5ad9f0310 files/bioperl-run-Pise-test-patch.diff 722
-SHA256 84c8280f8d3af311b53c8b6edd4e6ffa9acc0824528d96d7f1c2537404d3e30f files/bioperl-run-Pise-test-patch.diff 722
 DIST bioperl-run-1.4.tar.gz 830774 RMD160 264f9826e4d92c3cac96937b73db9bcc96b9eea8 SHA1 578434800872a41631d1bf2b632f3ef0475a24a1 SHA256 54eea327c8f80061d6c45e56b64d5c51daa20b723390eed1a3377f3a61645d86
 DIST bioperl-run-1.5.1.tar.gz 864369 RMD160 841e33cffda7b787b1700a075bf985c717d7e678 SHA1 35d4ab009f7e653dd18bb636854181d68841b613 SHA256 d9e1f5bdff5541376cab1c8b7e8db9bedbbb7b6f76b965d55dc20122a98f93e8
 EBUILD bioperl-run-1.4.ebuild 1273 RMD160 c96f8714c1a4a4386706f4296572e7e8240e2989 SHA1 142de2a107e8a5020b46973c816ac69e176b2f9f SHA256 17cffd41ea3b90f8f7f4ea71b56b7c04e4f7f2a8a756e1c725d864c4dece2539
-MD5 c1afff2e58b5176d7ccaaaf82f7b030a bioperl-run-1.4.ebuild 1273
-RMD160 c96f8714c1a4a4386706f4296572e7e8240e2989 bioperl-run-1.4.ebuild 1273
-SHA256 17cffd41ea3b90f8f7f4ea71b56b7c04e4f7f2a8a756e1c725d864c4dece2539 bioperl-run-1.4.ebuild 1273
 EBUILD bioperl-run-1.5.1.ebuild 1288 RMD160 c3b8b7a28ef8ca2884e77ad5c125fb12a34db0be SHA1 97d54cb97995e08bd02deeafd8dd9c093b461a2b SHA256 d5b066528a330c5a88f1f4c9925185a7efbe7605d27b3ca7dc46e00046943aea
-MD5 f95d569e34019d9e903f67238882bc56 bioperl-run-1.5.1.ebuild 1288
-RMD160 c3b8b7a28ef8ca2884e77ad5c125fb12a34db0be bioperl-run-1.5.1.ebuild 1288
-SHA256 d5b066528a330c5a88f1f4c9925185a7efbe7605d27b3ca7dc46e00046943aea bioperl-run-1.5.1.ebuild 1288
 MISC ChangeLog 2725 RMD160 4acc3b986eb7cfcb217f0b33648b54c7ad680169 SHA1 eddc76e34b31644dbe895d0d7496a803cc1cf37d SHA256 08a0e13ff16cba9566d49df0182f470cc2fc6c528f9c9bfc011596da5e943720
-MD5 e8205d5fd5e7337eb04ada2cbf8688a8 ChangeLog 2725
-RMD160 4acc3b986eb7cfcb217f0b33648b54c7ad680169 ChangeLog 2725
-SHA256 08a0e13ff16cba9566d49df0182f470cc2fc6c528f9c9bfc011596da5e943720 ChangeLog 2725
 MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
-MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
-RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
-SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
-MD5 fbc7f81e498a654bbbb74e1cf6d7c6c6 files/digest-bioperl-run-1.4 247
-RMD160 361c1cf48a34e9a17c645ff95fe8d3be934e5231 files/digest-bioperl-run-1.4 247
-SHA256 3d18d4f18f98d541e9a8a9749059696426bde39d2b2d026af9f8acc53fac3ff8 files/digest-bioperl-run-1.4 247
-MD5 388741fe73c4ca46a581b02689f13a74 files/digest-bioperl-run-1.5.1 253
-RMD160 864b8a2e16d7c2032c71dd099c266e6ff049def3 files/digest-bioperl-run-1.5.1 253
-SHA256 1cead595c5b1249d6ea254820bfeeca26ca2fbab4c094304cc28f8b3f4f4b7b2 files/digest-bioperl-run-1.5.1 253
------BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.1 (GNU/Linux)
-
-iD8DBQFF3PBcz974XjDVpbkRAs49AKCc7cKqPpUc9j363Vs0SlHKCv/DlQCgrpIu
-zaZJhQ9aOq0X8UfvcJYReyg=
-=M24t
------END PGP SIGNATURE-----
diff --git a/sci-biology/bioperl-run/files/digest-bioperl-run-1.4 b/sci-biology/bioperl-run/files/digest-bioperl-run-1.4
deleted file mode 100644
index 24bb441f84f7..000000000000
--- a/sci-biology/bioperl-run/files/digest-bioperl-run-1.4
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 25914ab48d1ab0393ebb067a8f68a821 bioperl-run-1.4.tar.gz 830774
-RMD160 264f9826e4d92c3cac96937b73db9bcc96b9eea8 bioperl-run-1.4.tar.gz 830774
-SHA256 54eea327c8f80061d6c45e56b64d5c51daa20b723390eed1a3377f3a61645d86 bioperl-run-1.4.tar.gz 830774
diff --git a/sci-biology/bioperl-run/files/digest-bioperl-run-1.5.1 b/sci-biology/bioperl-run/files/digest-bioperl-run-1.5.1
deleted file mode 100644
index 6e98b580335f..000000000000
--- a/sci-biology/bioperl-run/files/digest-bioperl-run-1.5.1
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 dbfce41fa5d86dab5fd1d6af4196c646 bioperl-run-1.5.1.tar.gz 864369
-RMD160 841e33cffda7b787b1700a075bf985c717d7e678 bioperl-run-1.5.1.tar.gz 864369
-SHA256 d9e1f5bdff5541376cab1c8b7e8db9bedbbb7b6f76b965d55dc20122a98f93e8 bioperl-run-1.5.1.tar.gz 864369
diff --git a/sci-biology/bioperl/Manifest b/sci-biology/bioperl/Manifest
index 964dbfe11c61..3b957f62cc81 100644
--- a/sci-biology/bioperl/Manifest
+++ b/sci-biology/bioperl/Manifest
@@ -1,24 +1,6 @@
 DIST bioperl-1.4.tar.bz2 4224508 RMD160 657170cc17655f2ab9ed5f6509cac5ae7eedd2c3 SHA1 d0683ff46ef304c04a40296561065d78baa0d787 SHA256 5ba68ce688ac4f079057e03b5bfca60f410d9eb68961d03b62ae75050718687b
 DIST bioperl-1.5.1.tar.bz2 5538613 RMD160 422bdd0dc17dd246ec1fc3ae6fe020705111892d SHA1 9841a458fd928eb9715f14eb686c7b1af3a379e7 SHA256 696c8bd162bc79fa3c75eeb63bb42f8cbcbb4b72de4dcb3bec7ea7a293506f6c
 EBUILD bioperl-1.4.ebuild 1144 RMD160 7e3108360f973a5199cfe5d89471980fdf475813 SHA1 da03c6457bb8feefd939ec532c0292a31eeb3c57 SHA256 1f9f7fba2480c392b99e860af10910a881e39af8123540bc8e7e6ccf206cf741
-MD5 ccae48c7a3c6268c7e13a388f7dd18b8 bioperl-1.4.ebuild 1144
-RMD160 7e3108360f973a5199cfe5d89471980fdf475813 bioperl-1.4.ebuild 1144
-SHA256 1f9f7fba2480c392b99e860af10910a881e39af8123540bc8e7e6ccf206cf741 bioperl-1.4.ebuild 1144
 EBUILD bioperl-1.5.1-r1.ebuild 1201 RMD160 2de969572a3dc6c4a6039cabe574b59685c248ad SHA1 6bb74a95769fe0f5b8bf242f5012c70ffe332716 SHA256 3ad71b565ac7192bd0039ea4fce8770ceb5e7984f6b23c7b3cca76e1027e7094
-MD5 60ee846d36c9277a4dbb88d009d31b03 bioperl-1.5.1-r1.ebuild 1201
-RMD160 2de969572a3dc6c4a6039cabe574b59685c248ad bioperl-1.5.1-r1.ebuild 1201
-SHA256 3ad71b565ac7192bd0039ea4fce8770ceb5e7984f6b23c7b3cca76e1027e7094 bioperl-1.5.1-r1.ebuild 1201
 MISC ChangeLog 6147 RMD160 3361dc088167d19dcae9eb85faff6cb924c57074 SHA1 658cf6432f44a180d512569622fee7c834e90e85 SHA256 b9d767ad5dfb4a49aaa25490b00999e66e78c4f8ccab0999d7b44037b76eb63d
-MD5 79d32d270678e42b7b28ec7d22d770a9 ChangeLog 6147
-RMD160 3361dc088167d19dcae9eb85faff6cb924c57074 ChangeLog 6147
-SHA256 b9d767ad5dfb4a49aaa25490b00999e66e78c4f8ccab0999d7b44037b76eb63d ChangeLog 6147
 MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
-MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
-RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
-SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
-MD5 4615cdeb82040a54abfe906737fbbe80 files/digest-bioperl-1.4 241
-RMD160 be4f220380af8e6d9050fb970f4afa9007cc5322 files/digest-bioperl-1.4 241
-SHA256 7f2cfe5a68d98c143ebc904b1c54de78d21218c225a93870256ea74c3d043fd1 files/digest-bioperl-1.4 241
-MD5 970b42591ef0cc641b037271250cb250 files/digest-bioperl-1.5.1-r1 247
-RMD160 772c74652407b0ed6de23eb6b5c4a524134dacd2 files/digest-bioperl-1.5.1-r1 247
-SHA256 92906734ae731b92c7acee45ed4a0e7827a47f6e4dc4a214e6049ac95734f1d3 files/digest-bioperl-1.5.1-r1 247
diff --git a/sci-biology/bioperl/files/digest-bioperl-1.4 b/sci-biology/bioperl/files/digest-bioperl-1.4
deleted file mode 100644
index 8eb73bb9fdd7..000000000000
--- a/sci-biology/bioperl/files/digest-bioperl-1.4
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 c49922bb58699cf42765056da8944f6e bioperl-1.4.tar.bz2 4224508
-RMD160 657170cc17655f2ab9ed5f6509cac5ae7eedd2c3 bioperl-1.4.tar.bz2 4224508
-SHA256 5ba68ce688ac4f079057e03b5bfca60f410d9eb68961d03b62ae75050718687b bioperl-1.4.tar.bz2 4224508
diff --git a/sci-biology/bioperl/files/digest-bioperl-1.5.1-r1 b/sci-biology/bioperl/files/digest-bioperl-1.5.1-r1
deleted file mode 100644
index 299158ff7ff2..000000000000
--- a/sci-biology/bioperl/files/digest-bioperl-1.5.1-r1
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 ba24f59a00c9919840a9b58f7fbd4d94 bioperl-1.5.1.tar.bz2 5538613
-RMD160 422bdd0dc17dd246ec1fc3ae6fe020705111892d bioperl-1.5.1.tar.bz2 5538613
-SHA256 696c8bd162bc79fa3c75eeb63bb42f8cbcbb4b72de4dcb3bec7ea7a293506f6c bioperl-1.5.1.tar.bz2 5538613
diff --git a/sci-biology/biopython/Manifest b/sci-biology/biopython/Manifest
index ba7c65e6cee7..206a39d74103 100644
--- a/sci-biology/biopython/Manifest
+++ b/sci-biology/biopython/Manifest
@@ -1,32 +1,8 @@
 AUX biopython-1.43-buildkdtree.patch 981 RMD160 3930f852a6ed3b783390d00e7c3ffdeccd2ee270 SHA1 45aaa6c57c4e42f8c21b00ca3d9837a32955da18 SHA256 6cbce6137e90670a53f83c4ac6c9c83523aa4b7730ed691a8be6fd884a4ddb9e
-MD5 466cc7a8ff9800e06801708e223db549 files/biopython-1.43-buildkdtree.patch 981
-RMD160 3930f852a6ed3b783390d00e7c3ffdeccd2ee270 files/biopython-1.43-buildkdtree.patch 981
-SHA256 6cbce6137e90670a53f83c4ac6c9c83523aa4b7730ed691a8be6fd884a4ddb9e files/biopython-1.43-buildkdtree.patch 981
 AUX biopython-1.44-sequtils-complement.patch 1033 RMD160 d7f8822ad8946e364bb4491a502055e7bf482478 SHA1 f08b0659db5053f13a7f871f037d5beb133745c8 SHA256 9e2f0e85e8be14971667037ac49edec94d73241c88a7cf9caeba6234955ed780
-MD5 bab2613dd83d763460ca816118f91c62 files/biopython-1.44-sequtils-complement.patch 1033
-RMD160 d7f8822ad8946e364bb4491a502055e7bf482478 files/biopython-1.44-sequtils-complement.patch 1033
-SHA256 9e2f0e85e8be14971667037ac49edec94d73241c88a7cf9caeba6234955ed780 files/biopython-1.44-sequtils-complement.patch 1033
 DIST biopython-1.42.tar.gz 3933507 RMD160 9f3027fb1b3326885376eaf7a5a714a26e0bc333 SHA1 107321d782b0a00bc3c302cd8c7e4b82c013d6d7 SHA256 ba4d00fdf7de67196ecba317dee09a14850b40596bd83d73e458c5f19fc9fc58
 DIST biopython-1.44.tar.gz 3840036 RMD160 ecbbe2f46f0e5d124d910632dc9a7fd051202c0b SHA1 ca2a35c9e92a219256fe4fc2a232df5328f9f5d9 SHA256 e47c4a7c612e11cb6c1c0515274ce231646b31bbf1c9e3ac58998928c0ad3c72
 EBUILD biopython-1.42.ebuild 846 RMD160 a0fcfacfda3111e43e6197881e0771849b652e50 SHA1 9782363628761d4971e6fb1c2b0d585fc5468d38 SHA256 dfdefa0933e1a373132143962cc8688e4e5c75f45491b9afe895eb61672c9263
-MD5 919ee1fe872b04f5e98fc6150d8ffa03 biopython-1.42.ebuild 846
-RMD160 a0fcfacfda3111e43e6197881e0771849b652e50 biopython-1.42.ebuild 846
-SHA256 dfdefa0933e1a373132143962cc8688e4e5c75f45491b9afe895eb61672c9263 biopython-1.42.ebuild 846
 EBUILD biopython-1.44.ebuild 1285 RMD160 246203000e501fef85e930297249c86a8ed0f61c SHA1 56f279f6842e2e98ed52da96f1114da125705657 SHA256 11a0ee529edeab3d10dc460135f3250bf1379ae87648b2563b496585d8b6eb40
-MD5 6d86404ea08245fcec2f7e255a3eece4 biopython-1.44.ebuild 1285
-RMD160 246203000e501fef85e930297249c86a8ed0f61c biopython-1.44.ebuild 1285
-SHA256 11a0ee529edeab3d10dc460135f3250bf1379ae87648b2563b496585d8b6eb40 biopython-1.44.ebuild 1285
 MISC ChangeLog 4674 RMD160 30de866bcf38fc97b5c6d04f3b993cb954348465 SHA1 b4ccff6be2611773cba0379948d3bfd0d4d9b2b7 SHA256 737b87e91b0d36b6a5c00a6c45b5c7c8725b648e8f4c6b422abc3e3ff36ba844
-MD5 eacf170b48e77e75e4039ec4c70c3c1b ChangeLog 4674
-RMD160 30de866bcf38fc97b5c6d04f3b993cb954348465 ChangeLog 4674
-SHA256 737b87e91b0d36b6a5c00a6c45b5c7c8725b648e8f4c6b422abc3e3ff36ba844 ChangeLog 4674
 MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
-MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
-RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
-SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
-MD5 849ac28783dbe22d1aa863f1bddbc239 files/digest-biopython-1.42 247
-RMD160 530d31339488bdc57982b5d99b88632530e184d5 files/digest-biopython-1.42 247
-SHA256 ecaf906566a4d758f5ac3f8ffeecca195eae920c614579c2d64ecb307ce2c7dc files/digest-biopython-1.42 247
-MD5 a4b7eabdc2b67382d8160a94a0a1309a files/digest-biopython-1.44 247
-RMD160 a4356748c264f6cd623666ec8118134616cdccca files/digest-biopython-1.44 247
-SHA256 1bc8178234a3d25bae300b4be2516278865b99d3e3354cd4825bbb02c9f7ea24 files/digest-biopython-1.44 247
diff --git a/sci-biology/biopython/files/digest-biopython-1.42 b/sci-biology/biopython/files/digest-biopython-1.42
deleted file mode 100644
index 4f40137b0a44..000000000000
--- a/sci-biology/biopython/files/digest-biopython-1.42
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 6d9bf58d0fcfa5a3b2053ad419069ff3 biopython-1.42.tar.gz 3933507
-RMD160 9f3027fb1b3326885376eaf7a5a714a26e0bc333 biopython-1.42.tar.gz 3933507
-SHA256 ba4d00fdf7de67196ecba317dee09a14850b40596bd83d73e458c5f19fc9fc58 biopython-1.42.tar.gz 3933507
diff --git a/sci-biology/biopython/files/digest-biopython-1.44 b/sci-biology/biopython/files/digest-biopython-1.44
deleted file mode 100644
index d690618f53f6..000000000000
--- a/sci-biology/biopython/files/digest-biopython-1.44
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 762c7a358af9dc58b712b8b4bb99d0c2 biopython-1.44.tar.gz 3840036
-RMD160 ecbbe2f46f0e5d124d910632dc9a7fd051202c0b biopython-1.44.tar.gz 3840036
-SHA256 e47c4a7c612e11cb6c1c0515274ce231646b31bbf1c9e3ac58998928c0ad3c72 biopython-1.44.tar.gz 3840036
diff --git a/sci-biology/bioruby/Manifest b/sci-biology/bioruby/Manifest
index 8b069a66a284..0202a6dbabce 100644
--- a/sci-biology/bioruby/Manifest
+++ b/sci-biology/bioruby/Manifest
@@ -1,24 +1,6 @@
 DIST bioruby-1.0.0.tar.gz 573771 RMD160 07a55c540ba1b6c6b1fd0a8c6f156ec472fd8f47 SHA1 6443cd0d99bbee498aec75edad1258d02a636649 SHA256 7d4255e0a032ef21acea32eb1b3051843b3363008f7a36d7515430e2823b1be3
 DIST bioruby-1.1.0.tar.gz 807130 RMD160 cf0c2a8722a16eba0dfea69c209ca1401ff71d0f SHA1 9c1e2bd8411cc6cdf559e1fba68bd4531eea558f SHA256 d07a903ac633e381b356dd6429d81d318e3da86bc63b12479b57ec7ead1b22f9
 EBUILD bioruby-1.0.0.ebuild 462 RMD160 f38456edc46d4a87001eba5d6d6466a4eb7d8af7 SHA1 bdbbce5215772733b75292a746753ac0b6869fbe SHA256 7a0b7452f7dfddccecde5f0438b99d99dfe727040cb03ad958b5e8d3f6ca7819
-MD5 996d52d9e71e098402e9aeb51c1dc252 bioruby-1.0.0.ebuild 462
-RMD160 f38456edc46d4a87001eba5d6d6466a4eb7d8af7 bioruby-1.0.0.ebuild 462
-SHA256 7a0b7452f7dfddccecde5f0438b99d99dfe727040cb03ad958b5e8d3f6ca7819 bioruby-1.0.0.ebuild 462
 EBUILD bioruby-1.1.0.ebuild 462 RMD160 e2471709354eed2566aa5469b8b2f1c6797f74e6 SHA1 f91557883775c21b694fa47fdc82129528117f98 SHA256 4c1b40838057c75db4aa9b3cc482125334d3776d11bda674d5ed8e13e6f00e71
-MD5 393eda2d1888babf872bbfd0532efe57 bioruby-1.1.0.ebuild 462
-RMD160 e2471709354eed2566aa5469b8b2f1c6797f74e6 bioruby-1.1.0.ebuild 462
-SHA256 4c1b40838057c75db4aa9b3cc482125334d3776d11bda674d5ed8e13e6f00e71 bioruby-1.1.0.ebuild 462
 MISC ChangeLog 1233 RMD160 6686b5db1cd276475b6c6e695a34585a444a380d SHA1 565a6cf21899017b96531e323f5276aeccdaaa53 SHA256 dfbf4e8bbc06485a26551b6eadfeee67d4eba556f525e760fa675b15a64e3905
-MD5 260f1fc752eb365501c207e2e9cdaecd ChangeLog 1233
-RMD160 6686b5db1cd276475b6c6e695a34585a444a380d ChangeLog 1233
-SHA256 dfbf4e8bbc06485a26551b6eadfeee67d4eba556f525e760fa675b15a64e3905 ChangeLog 1233
 MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
-MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
-RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
-SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
-MD5 7668cac25b640ee0f710121122d97e65 files/digest-bioruby-1.0.0 241
-RMD160 d1d7af261c893efd416f66188487b705a9cfef47 files/digest-bioruby-1.0.0 241
-SHA256 1c4b54f238b0979cb24c354de5de745e6bc22513fd5aa458ba7573da486a8b1c files/digest-bioruby-1.0.0 241
-MD5 1514e75ed90ea822c55c85ad40a0ce1d files/digest-bioruby-1.1.0 241
-RMD160 cc407685b4281b17e21cf720e6f1055a10d9e6ae files/digest-bioruby-1.1.0 241
-SHA256 9a26f4406cc3b3f8f01ab625e0bc7a107c3ec145d738761fb6c9da0fa0dd139e files/digest-bioruby-1.1.0 241
diff --git a/sci-biology/bioruby/files/digest-bioruby-1.0.0 b/sci-biology/bioruby/files/digest-bioruby-1.0.0
deleted file mode 100644
index cd3004c63cfc..000000000000
--- a/sci-biology/bioruby/files/digest-bioruby-1.0.0
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 5106b71b9b53bce7c3b93df911d2411d bioruby-1.0.0.tar.gz 573771
-RMD160 07a55c540ba1b6c6b1fd0a8c6f156ec472fd8f47 bioruby-1.0.0.tar.gz 573771
-SHA256 7d4255e0a032ef21acea32eb1b3051843b3363008f7a36d7515430e2823b1be3 bioruby-1.0.0.tar.gz 573771
diff --git a/sci-biology/bioruby/files/digest-bioruby-1.1.0 b/sci-biology/bioruby/files/digest-bioruby-1.1.0
deleted file mode 100644
index 448a4f1175d9..000000000000
--- a/sci-biology/bioruby/files/digest-bioruby-1.1.0
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 d4742051875d3a67623de5f87de65a12 bioruby-1.1.0.tar.gz 807130
-RMD160 cf0c2a8722a16eba0dfea69c209ca1401ff71d0f bioruby-1.1.0.tar.gz 807130
-SHA256 d07a903ac633e381b356dd6429d81d318e3da86bc63b12479b57ec7ead1b22f9 bioruby-1.1.0.tar.gz 807130
diff --git a/sci-biology/clustalw-mpi/Manifest b/sci-biology/clustalw-mpi/Manifest
index 246b24680647..8c620b2d709b 100644
--- a/sci-biology/clustalw-mpi/Manifest
+++ b/sci-biology/clustalw-mpi/Manifest
@@ -1,26 +1,4 @@
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
-
 DIST clustalw-mpi-0.13.tar.gz 154911 RMD160 9da3e418efcb0cfd0c5df2705ee217b9dacc3917 SHA1 ae5026e8b4ba58bb0caa5643ea90434d9589df5a SHA256 2fcb0dc0001b034f2931153654fc66d67db360f0bf3fbcde19dc389bbe145845
 EBUILD clustalw-mpi-0.13.ebuild 1236 RMD160 f29c0539cda3118c01944cacdffad794fdfdd183 SHA1 011ddc955f19dc500d8b676c0722b7724b01f510 SHA256 369a3ba3109019a1d9ef22407164b3d3b2bd6312bc6e9ba478190844e407dcf4
-MD5 f5f4267e673ec202b82e6b063deb108f clustalw-mpi-0.13.ebuild 1236
-RMD160 f29c0539cda3118c01944cacdffad794fdfdd183 clustalw-mpi-0.13.ebuild 1236
-SHA256 369a3ba3109019a1d9ef22407164b3d3b2bd6312bc6e9ba478190844e407dcf4 clustalw-mpi-0.13.ebuild 1236
 MISC ChangeLog 803 RMD160 e45786140c4f964edad4de874d10f06ebfda8f23 SHA1 6f9ce6937641437eacccf303c90bf92e6910dfc8 SHA256 10275ac9d1c3cd4dfa1ed0362a091f49e3c99300c266895c0d4f38a65a411dd5
-MD5 9964c63b267a9b48cd9b24b01834d8f0 ChangeLog 803
-RMD160 e45786140c4f964edad4de874d10f06ebfda8f23 ChangeLog 803
-SHA256 10275ac9d1c3cd4dfa1ed0362a091f49e3c99300c266895c0d4f38a65a411dd5 ChangeLog 803
 MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
-MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
-RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
-SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
-MD5 86cd531ee26535e0d30f6e5fe36983c9 files/digest-clustalw-mpi-0.13 253
-RMD160 eee73c3bdccad254b5e136e28c7390bf4e185b08 files/digest-clustalw-mpi-0.13 253
-SHA256 3291348766b4589d5a2a9248152331e261050903a05fd32a6ea181fcb3f934ba files/digest-clustalw-mpi-0.13 253
------BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.1 (GNU/Linux)
-
-iD8DBQFF3PB3z974XjDVpbkRAqmPAJ9AB/J94B+7r0kJsDdgvDkJTs8dOwCguapF
-3W0pHSh8wTqjvC7+4qiduJg=
-=BtAH
------END PGP SIGNATURE-----
diff --git a/sci-biology/clustalw-mpi/files/digest-clustalw-mpi-0.13 b/sci-biology/clustalw-mpi/files/digest-clustalw-mpi-0.13
deleted file mode 100644
index 9c37a306be94..000000000000
--- a/sci-biology/clustalw-mpi/files/digest-clustalw-mpi-0.13
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 f4c24336764eff6be73322bfc7167f16 clustalw-mpi-0.13.tar.gz 154911
-RMD160 9da3e418efcb0cfd0c5df2705ee217b9dacc3917 clustalw-mpi-0.13.tar.gz 154911
-SHA256 2fcb0dc0001b034f2931153654fc66d67db360f0bf3fbcde19dc389bbe145845 clustalw-mpi-0.13.tar.gz 154911
diff --git a/sci-biology/clustalw/Manifest b/sci-biology/clustalw/Manifest
index f9a828333ed7..cb8c9fec202b 100644
--- a/sci-biology/clustalw/Manifest
+++ b/sci-biology/clustalw/Manifest
@@ -1,16 +1,4 @@
 DIST clustalw1.83.UNIX.tar.gz 166863 RMD160 20c0ec7739be6747ae08220e5abf2bae412f039e SHA1 801ce911749171471b7964a1cff93c53c876c282 SHA256 8b757e02ae95ac0a0dd37db640497aa90f7a13a11784ce2a17f41b64e3059c60
 EBUILD clustalw-1.83-r1.ebuild 1030 RMD160 a2251b5fb229c0c64df13e596a7e7a7f4a5fd7ee SHA1 38812487b729ab24c6f973e55625ab5d2388febc SHA256 8530b3b58bc63d54452c34dea7c0017d9414a0758860cb59a38edfee5e8da902
-MD5 3690720c399f609363201862554f7f9e clustalw-1.83-r1.ebuild 1030
-RMD160 a2251b5fb229c0c64df13e596a7e7a7f4a5fd7ee clustalw-1.83-r1.ebuild 1030
-SHA256 8530b3b58bc63d54452c34dea7c0017d9414a0758860cb59a38edfee5e8da902 clustalw-1.83-r1.ebuild 1030
 MISC ChangeLog 2480 RMD160 06e7aaeee55f3548398842427a524a55c6d1b1f1 SHA1 43f6600a6f373cafe20fc1da6426d4637c9dab5f SHA256 e330b7aeb576922a7c55ed5ac1dff2fcaec118126c07f805e883a12ecf9bdc48
-MD5 4ad73f9ead700707c3dc5bd11a8c4c31 ChangeLog 2480
-RMD160 06e7aaeee55f3548398842427a524a55c6d1b1f1 ChangeLog 2480
-SHA256 e330b7aeb576922a7c55ed5ac1dff2fcaec118126c07f805e883a12ecf9bdc48 ChangeLog 2480
 MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
-MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
-RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
-SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
-MD5 44a061dcb5482638c06d98339b54b791 files/digest-clustalw-1.83-r1 253
-RMD160 cd826ea2b5442123ac2038aa54cbbe3b1cb0e443 files/digest-clustalw-1.83-r1 253
-SHA256 7249ba9ad9898f51587f5bdb30454a4f9a37a8cf643e3075bb3cf70f82606cbd files/digest-clustalw-1.83-r1 253
diff --git a/sci-biology/clustalw/files/digest-clustalw-1.83-r1 b/sci-biology/clustalw/files/digest-clustalw-1.83-r1
deleted file mode 100644
index 7c3803f8cdab..000000000000
--- a/sci-biology/clustalw/files/digest-clustalw-1.83-r1
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 dc240277e5bb14ffc106d4a5fda87752 clustalw1.83.UNIX.tar.gz 166863
-RMD160 20c0ec7739be6747ae08220e5abf2bae412f039e clustalw1.83.UNIX.tar.gz 166863
-SHA256 8b757e02ae95ac0a0dd37db640497aa90f7a13a11784ce2a17f41b64e3059c60 clustalw1.83.UNIX.tar.gz 166863
diff --git a/sci-biology/clustalx/Manifest b/sci-biology/clustalx/Manifest
index bd88bb6d0258..19f4e54e89bf 100644
--- a/sci-biology/clustalx/Manifest
+++ b/sci-biology/clustalx/Manifest
@@ -1,16 +1,4 @@
 DIST clustalx1.83.sun.tar.gz 860205 RMD160 d64c2bc17204b7c9dc08a0ea0050e68b57d37283 SHA1 456e850f24c59b6bbe9944864711257106205329 SHA256 67082dd0b788dc75cc99ed283cd1e8ad0c95d9c7d3642d27bb69211f616daca2
 EBUILD clustalx-1.83-r2.ebuild 1815 RMD160 8d0f732ba15451a868387c0aed1ab01a25db3257 SHA1 2c157fbd1f0b4f36a3cb83b3f28e32608dc98b2e SHA256 817b1fd0d28786659526b249b4ed51d74be0c9f9390ededc1bf1ad5de06efa9f
-MD5 3a51dafab46d509a11518f6a8e8dde50 clustalx-1.83-r2.ebuild 1815
-RMD160 8d0f732ba15451a868387c0aed1ab01a25db3257 clustalx-1.83-r2.ebuild 1815
-SHA256 817b1fd0d28786659526b249b4ed51d74be0c9f9390ededc1bf1ad5de06efa9f clustalx-1.83-r2.ebuild 1815
 MISC ChangeLog 2290 RMD160 4fe9b2a43ef7698c537a530ccc6a97353850038e SHA1 0862843fa1894768468ff95965040cff88e43bef SHA256 ddc1599df7f739700bf99579d0fc99800a142e31748cba057bdee95ec883bbe5
-MD5 9e7c91478e31b94cb0a7e85b5dadb308 ChangeLog 2290
-RMD160 4fe9b2a43ef7698c537a530ccc6a97353850038e ChangeLog 2290
-SHA256 ddc1599df7f739700bf99579d0fc99800a142e31748cba057bdee95ec883bbe5 ChangeLog 2290
 MISC metadata.xml 517 RMD160 cbef0914ee9e8ad6d3b02327869c8a337a29c7c9 SHA1 2b9b6c303802362af03c563c31f8a6f30accb15c SHA256 6696a58fe9064e27540e9d4bf0799a6ff7edf64ab01e988e277c73c74438c044
-MD5 2e31a0b758e19425a055928c992d448a metadata.xml 517
-RMD160 cbef0914ee9e8ad6d3b02327869c8a337a29c7c9 metadata.xml 517
-SHA256 6696a58fe9064e27540e9d4bf0799a6ff7edf64ab01e988e277c73c74438c044 metadata.xml 517
-MD5 e8eaae7097643b8ae1f66c06ce995f3b files/digest-clustalx-1.83-r2 250
-RMD160 555d26bb0733a227456716bc9c8e64bb054c2b47 files/digest-clustalx-1.83-r2 250
-SHA256 0313f2e2d8e910382a9d7f74921062a6e103847757fe72e44254f3b88a8baa8f files/digest-clustalx-1.83-r2 250
diff --git a/sci-biology/clustalx/files/digest-clustalx-1.83-r2 b/sci-biology/clustalx/files/digest-clustalx-1.83-r2
deleted file mode 100644
index d442b6afb2c7..000000000000
--- a/sci-biology/clustalx/files/digest-clustalx-1.83-r2
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 732538fe5fea04f4d5dd665e84c3b9ab clustalx1.83.sun.tar.gz 860205
-RMD160 d64c2bc17204b7c9dc08a0ea0050e68b57d37283 clustalx1.83.sun.tar.gz 860205
-SHA256 67082dd0b788dc75cc99ed283cd1e8ad0c95d9c7d3642d27bb69211f616daca2 clustalx1.83.sun.tar.gz 860205
diff --git a/sci-biology/cutg/Manifest b/sci-biology/cutg/Manifest
index e13fecf83d3f..9c999e2cc728 100644
--- a/sci-biology/cutg/Manifest
+++ b/sci-biology/cutg/Manifest
@@ -1,16 +1,4 @@
 DIST CUTG.151.tar.gz 165813396 RMD160 77a304321f1535af8bb6eff1ce5c8e559a64535c SHA1 0327ccf522d9e38ab6e261bb0e2077533bf1892b SHA256 8184ac1a99ba54791d4ca672d514daeafd7e6736e76524fbbd7b3930d7d8534f
 EBUILD cutg-151.ebuild 1295 RMD160 d9f1f0fd111e6b581264b5ef9b49b65ad59f03e3 SHA1 9345c9c39d8e7cf4e7560edbd826a8c5e4005249 SHA256 721a8799721e2a6d223403b7b1932add2755a171d71fa2ebe3fa4a654ecfffb1
-MD5 4cd23123d14e14308e5f911722ddc7f9 cutg-151.ebuild 1295
-RMD160 d9f1f0fd111e6b581264b5ef9b49b65ad59f03e3 cutg-151.ebuild 1295
-SHA256 721a8799721e2a6d223403b7b1932add2755a171d71fa2ebe3fa4a654ecfffb1 cutg-151.ebuild 1295
 MISC ChangeLog 6203 RMD160 498f7fbacfe10913831c78fc3c3203fc77caf0b3 SHA1 68fa5861fa0c21b4557e4285a55a94426b6813fa SHA256 59ddf602e094011d872a718554844de36ce9ac881a4f31f7cb951f249c12ac88
-MD5 b108ac091f4171da827c92c706ff82e2 ChangeLog 6203
-RMD160 498f7fbacfe10913831c78fc3c3203fc77caf0b3 ChangeLog 6203
-SHA256 59ddf602e094011d872a718554844de36ce9ac881a4f31f7cb951f249c12ac88 ChangeLog 6203
 MISC metadata.xml 602 RMD160 0bfaf291f7a1ef2d7c7c3c56b307faeb2d73a14a SHA1 029a446c9375b8a243aa2ef848a6d73144495d81 SHA256 99510df8b62ab52d5ad0a72077f01df7e0e9ccaf374a3456e4a39fb9821aa46a
-MD5 35b8093f40dbeaa81ac2e1da6fb9c7a9 metadata.xml 602
-RMD160 0bfaf291f7a1ef2d7c7c3c56b307faeb2d73a14a metadata.xml 602
-SHA256 99510df8b62ab52d5ad0a72077f01df7e0e9ccaf374a3456e4a39fb9821aa46a metadata.xml 602
-MD5 f1527b097ae96fc58677ce4c70027768 files/digest-cutg-151 235
-RMD160 1adc6d33c05fb22b56fe0de042ba749972bee9db files/digest-cutg-151 235
-SHA256 0cd36275bb52878eb43a29bbbdce5479de30275ef352bf6c015745dc2f4cd5b8 files/digest-cutg-151 235
diff --git a/sci-biology/cutg/files/digest-cutg-151 b/sci-biology/cutg/files/digest-cutg-151
deleted file mode 100644
index 500b02ebf419..000000000000
--- a/sci-biology/cutg/files/digest-cutg-151
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 f71e5ba098a4b6a22171b7b67da18d8e CUTG.151.tar.gz 165813396
-RMD160 77a304321f1535af8bb6eff1ce5c8e559a64535c CUTG.151.tar.gz 165813396
-SHA256 8184ac1a99ba54791d4ca672d514daeafd7e6736e76524fbbd7b3930d7d8534f CUTG.151.tar.gz 165813396
diff --git a/sci-biology/dialign-t/Manifest b/sci-biology/dialign-t/Manifest
index c2b02770e357..40a7eb8060bd 100644
--- a/sci-biology/dialign-t/Manifest
+++ b/sci-biology/dialign-t/Manifest
@@ -1,24 +1,6 @@
 DIST DIALIGN-T_0.2.1.tar.gz 1635888 RMD160 a43807668354120b873cad0120a7691b6860ca28 SHA1 5e866806738a9467e19a4e4d8659870bd1d1cb3e SHA256 2249bf9007588e891525b4edc085285f1390c2bf8d42ce327aa9217130d7e930
 DIST DIALIGN-T_0.2.2.tar.gz 1551909 RMD160 413277d62a3a93c871c6825f06786d9c3c462de6 SHA1 71b853caf734f19767a8bba74aa022b1a9dbba13 SHA256 31c2aa031c58854f3c22abf44bf731f6cd67eb86cb46db9ce6b4b49c3011db98
 EBUILD dialign-t-0.2.1.ebuild 1008 RMD160 71fb25ca449a6acd2c38dee9b2d1b1d93c2e211d SHA1 45cff5c6b28f3b36ea6334f2e53c86f2e6738640 SHA256 6f021c9b5da85508d3de01b47ff3861c04be39cab054d6658f38c1ff5b5584bc
-MD5 bb116e6119c131dc5898b6dc26a373e0 dialign-t-0.2.1.ebuild 1008
-RMD160 71fb25ca449a6acd2c38dee9b2d1b1d93c2e211d dialign-t-0.2.1.ebuild 1008
-SHA256 6f021c9b5da85508d3de01b47ff3861c04be39cab054d6658f38c1ff5b5584bc dialign-t-0.2.1.ebuild 1008
 EBUILD dialign-t-0.2.2.ebuild 1013 RMD160 c1a1ce5033594d6c594ab992e1d4a061f4976133 SHA1 bab0cd0f33f8d4b62ad09ca82743a59174345724 SHA256 a319254d0a3fd7ffc023016ccec9acd19f332cfa858e8d404d30e3d7ec26fbbd
-MD5 7fd40f305ce39b75e1669d1b9b7752b6 dialign-t-0.2.2.ebuild 1013
-RMD160 c1a1ce5033594d6c594ab992e1d4a061f4976133 dialign-t-0.2.2.ebuild 1013
-SHA256 a319254d0a3fd7ffc023016ccec9acd19f332cfa858e8d404d30e3d7ec26fbbd dialign-t-0.2.2.ebuild 1013
 MISC ChangeLog 1004 RMD160 deb489b4057d5ee9120d466f709f6278e0fb1785 SHA1 f50ec299006fd604332a8656cb51a9ef5be3ac2a SHA256 34a0a80752e30cbbb6fa9da47d2f5f7f11d624e506065f64507deb073040ced1
-MD5 8ebb0c70c43d9ef3d33db097de977159 ChangeLog 1004
-RMD160 deb489b4057d5ee9120d466f709f6278e0fb1785 ChangeLog 1004
-SHA256 34a0a80752e30cbbb6fa9da47d2f5f7f11d624e506065f64507deb073040ced1 ChangeLog 1004
 MISC metadata.xml 164 RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c SHA1 61a50baedfd041e663d6c2a41a28b57e22dbb6de SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f
-MD5 86813ca8050bc98ba326cb74e88150a5 metadata.xml 164
-RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c metadata.xml 164
-SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f metadata.xml 164
-MD5 20a9e61f87048ee301d0cb690b890ede files/digest-dialign-t-0.2.1 250
-RMD160 9d920eafc14c5c82bb7f59a0589570c52ce5e292 files/digest-dialign-t-0.2.1 250
-SHA256 13b80f9063a8294da8e20803cd0ab7ac56a38eb1ba5548885f52000103db8795 files/digest-dialign-t-0.2.1 250
-MD5 4aef30b7f9323da3b90ff74ae0d5ce19 files/digest-dialign-t-0.2.2 250
-RMD160 c5a99abc1a097684c07c53c218233cdb722f1df7 files/digest-dialign-t-0.2.2 250
-SHA256 d872c3e0fc3a1002c6b8100ac22ac3aa8a2462aadfde1e002510e6364d39e854 files/digest-dialign-t-0.2.2 250
diff --git a/sci-biology/dialign-t/files/digest-dialign-t-0.2.1 b/sci-biology/dialign-t/files/digest-dialign-t-0.2.1
deleted file mode 100644
index fd423eb5e37f..000000000000
--- a/sci-biology/dialign-t/files/digest-dialign-t-0.2.1
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 d1d4fc381a009c68387e159b78b33801 DIALIGN-T_0.2.1.tar.gz 1635888
-RMD160 a43807668354120b873cad0120a7691b6860ca28 DIALIGN-T_0.2.1.tar.gz 1635888
-SHA256 2249bf9007588e891525b4edc085285f1390c2bf8d42ce327aa9217130d7e930 DIALIGN-T_0.2.1.tar.gz 1635888
diff --git a/sci-biology/dialign-t/files/digest-dialign-t-0.2.2 b/sci-biology/dialign-t/files/digest-dialign-t-0.2.2
deleted file mode 100644
index 02c3db344270..000000000000
--- a/sci-biology/dialign-t/files/digest-dialign-t-0.2.2
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 0de4a7a5403c0aa905c2e283887eb623 DIALIGN-T_0.2.2.tar.gz 1551909
-RMD160 413277d62a3a93c871c6825f06786d9c3c462de6 DIALIGN-T_0.2.2.tar.gz 1551909
-SHA256 31c2aa031c58854f3c22abf44bf731f6cd67eb86cb46db9ce6b4b49c3011db98 DIALIGN-T_0.2.2.tar.gz 1551909
diff --git a/sci-biology/elph/Manifest b/sci-biology/elph/Manifest
index 66de2a762822..782a4b8d5d46 100644
--- a/sci-biology/elph/Manifest
+++ b/sci-biology/elph/Manifest
@@ -1,32 +1,8 @@
 AUX elph-0.1.4-usage.patch 3909 RMD160 dd9e29881937b1be29c851270056ee455b1ec6e3 SHA1 42b64abe718ed2702513cd2c43083e1bfeb6d6b6 SHA256 89ed340310bb46f6d92d7f644b515e4b919dbf411a039a225e04387055b47482
-MD5 75fe098a9b1df66ed55f16b4cfde3922 files/elph-0.1.4-usage.patch 3909
-RMD160 dd9e29881937b1be29c851270056ee455b1ec6e3 files/elph-0.1.4-usage.patch 3909
-SHA256 89ed340310bb46f6d92d7f644b515e4b919dbf411a039a225e04387055b47482 files/elph-0.1.4-usage.patch 3909
 AUX elph-0.1.5-usage.patch 3913 RMD160 31964a1d76753d2167c5e206d34648088e974f34 SHA1 43dec8645c461c8cf1557c66f1b3bcb1daa28eb7 SHA256 78ee515e8a0ab04b279cb638c459fe1152b5f0015c9d5c9feea4f3d2a00d226a
-MD5 fdc58c9dcd2752ace3fb6520676c8414 files/elph-0.1.5-usage.patch 3913
-RMD160 31964a1d76753d2167c5e206d34648088e974f34 files/elph-0.1.5-usage.patch 3913
-SHA256 78ee515e8a0ab04b279cb638c459fe1152b5f0015c9d5c9feea4f3d2a00d226a files/elph-0.1.5-usage.patch 3913
 DIST ELPH-0.1.5.tar.gz 153150 RMD160 7e60e2cf9a99cb435768cebbcd1506164e8a901c SHA1 1a3820c851ac0d021c9696ba1fd4eec819d82dbc SHA256 6ffa160f85cb2569bdf869cb0514dc624afcef4f2d8a36efbd1228d1a16cf361
 DIST ELPH-1.0.1.tar.gz 113476 RMD160 854bc34aba30f1c7493536e1b2e36dd8143af7e7 SHA1 9c8bf6ac54ade29daa15dc07aeeb94747626298a SHA256 6d944401d2457d75815a34dbb5780f05df569eb1edfd00909b33c4c4c4ff40b9
 EBUILD elph-0.1.5.ebuild 1097 RMD160 a5794a06cb260e4768d2b7fe5fae9092b983556c SHA1 08600088dea012a4246f67cc5a1a7325e2ddf501 SHA256 d41af8ccd13ca55b1833101721d0eabf0a99a4d8ace913ac2f36341103c40b45
-MD5 a62a0335907aa027228a56c584b97c01 elph-0.1.5.ebuild 1097
-RMD160 a5794a06cb260e4768d2b7fe5fae9092b983556c elph-0.1.5.ebuild 1097
-SHA256 d41af8ccd13ca55b1833101721d0eabf0a99a4d8ace913ac2f36341103c40b45 elph-0.1.5.ebuild 1097
 EBUILD elph-1.0.1.ebuild 1055 RMD160 cf51c1f8bea3fcf962382f6923b27bcd0c4ed491 SHA1 e940e393d33fa4923d440d0c118de44e5e259d4a SHA256 602418e941a890dc5afa45ef5228745108ef5607169429b938c3347b84c0a56a
-MD5 db9a32ac49bd93b3bb319592590b4517 elph-1.0.1.ebuild 1055
-RMD160 cf51c1f8bea3fcf962382f6923b27bcd0c4ed491 elph-1.0.1.ebuild 1055
-SHA256 602418e941a890dc5afa45ef5228745108ef5607169429b938c3347b84c0a56a elph-1.0.1.ebuild 1055
 MISC ChangeLog 1898 RMD160 c04f7c712323e44929f99b93d64dd699107b45e1 SHA1 e9b2e3f35c7c375af370126b65c23506cbb990db SHA256 7fab7589e3d3c214efeaac40b9f9d52abc04da5f063f67523bed33c14ce48d04
-MD5 b832c63e71263263a20ee09f8f74a981 ChangeLog 1898
-RMD160 c04f7c712323e44929f99b93d64dd699107b45e1 ChangeLog 1898
-SHA256 7fab7589e3d3c214efeaac40b9f9d52abc04da5f063f67523bed33c14ce48d04 ChangeLog 1898
 MISC metadata.xml 521 RMD160 a76504e965c605b1482c130ff89a7a2699b40848 SHA1 a53e9edd330363da92d61317a9b6dff0764e7e69 SHA256 6258ca36980b98a20660267e910d4866d57ea6f499fc23f98a3cfd774db23e23
-MD5 6c406c6b044ef78b32d6eecfe0e07514 metadata.xml 521
-RMD160 a76504e965c605b1482c130ff89a7a2699b40848 metadata.xml 521
-SHA256 6258ca36980b98a20660267e910d4866d57ea6f499fc23f98a3cfd774db23e23 metadata.xml 521
-MD5 56354c1657421bcf7d27ae1deb5ad5f0 files/digest-elph-0.1.5 232
-RMD160 f8254204f481cb8f0a3ef8988ed040a407a8aa7e files/digest-elph-0.1.5 232
-SHA256 e0b26287eda0f69a1e54711b93870e87a4ddd21ae3c09959f7d24ce2ee95fdef files/digest-elph-0.1.5 232
-MD5 70edaf4d4bc4793697521c5707509fd8 files/digest-elph-1.0.1 232
-RMD160 7a6222bb12bd1611ffc944e3fdc1edb9519302fe files/digest-elph-1.0.1 232
-SHA256 36d5182c3fb2d6d866ac53de7cde7b39b5e48b25529c795741a7ed3b0f6f20fb files/digest-elph-1.0.1 232
diff --git a/sci-biology/elph/files/digest-elph-0.1.5 b/sci-biology/elph/files/digest-elph-0.1.5
deleted file mode 100644
index 05e80bf03df7..000000000000
--- a/sci-biology/elph/files/digest-elph-0.1.5
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 0c1d0bbef483e7ee46ffb6b26824682c ELPH-0.1.5.tar.gz 153150
-RMD160 7e60e2cf9a99cb435768cebbcd1506164e8a901c ELPH-0.1.5.tar.gz 153150
-SHA256 6ffa160f85cb2569bdf869cb0514dc624afcef4f2d8a36efbd1228d1a16cf361 ELPH-0.1.5.tar.gz 153150
diff --git a/sci-biology/elph/files/digest-elph-1.0.1 b/sci-biology/elph/files/digest-elph-1.0.1
deleted file mode 100644
index 72292f6948a6..000000000000
--- a/sci-biology/elph/files/digest-elph-1.0.1
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 eb96b4dde3ab12ba1f31a4230a829ff3 ELPH-1.0.1.tar.gz 113476
-RMD160 854bc34aba30f1c7493536e1b2e36dd8143af7e7 ELPH-1.0.1.tar.gz 113476
-SHA256 6d944401d2457d75815a34dbb5780f05df569eb1edfd00909b33c4c4c4ff40b9 ELPH-1.0.1.tar.gz 113476
diff --git a/sci-biology/embassy-domainatrix/Manifest b/sci-biology/embassy-domainatrix/Manifest
index 21500d3baf92..902ebdab055d 100644
--- a/sci-biology/embassy-domainatrix/Manifest
+++ b/sci-biology/embassy-domainatrix/Manifest
@@ -3,24 +3,6 @@ DIST EMBOSS-5.0.0.tar.gz 20666560 RMD160 1bf510c0919d991e4ba67182137448dee49bab4
 DIST embassy-4.0.0-domainatrix-0.1.0.tar.gz 405474 RMD160 65f60a617d1d59b2de530d7cdf0be6e77416a0b6 SHA1 f4e0176abbc687881472ec53ae2bc2a2acb89f16 SHA256 efeb08f29cfd18a87fb54a448eb5b13a5805ae0d3a2d067563c8ff86feb1a1d7
 DIST embassy-5.0.0-domainatrix-0.1.0.tar.gz 420051 RMD160 82ce385002a3dc70381a3d5e4d499eaade14bd89 SHA1 d8545ebb0b78f6651b199e6f942f5ca18a699c15 SHA256 b81fde3ab329ab75482b341568ef2965d99803765438f3825688a0d2abc05ca6
 EBUILD embassy-domainatrix-0.1.0-r1.ebuild 502 RMD160 17053d8261d32b4fef6ec793be9056a15fa67440 SHA1 dd89d483f3e3bb8d107933f4a889c8aba3e5e2e7 SHA256 f50ce9be9c72aac2f96fe2219f768ef599eca69baef31393799b7e7d5b5c62af
-MD5 7be44659331ee47a6c122cb215e236b9 embassy-domainatrix-0.1.0-r1.ebuild 502
-RMD160 17053d8261d32b4fef6ec793be9056a15fa67440 embassy-domainatrix-0.1.0-r1.ebuild 502
-SHA256 f50ce9be9c72aac2f96fe2219f768ef599eca69baef31393799b7e7d5b5c62af embassy-domainatrix-0.1.0-r1.ebuild 502
 EBUILD embassy-domainatrix-0.1.0-r2.ebuild 506 RMD160 18f5b492b6cb30dac6710291458b465b094296f6 SHA1 9236acead7097d2452f13e0d60531d00b356240e SHA256 5e2f67ecd5c318925f7cd1b3726344f86f5b86b4da14a2bc5202e7b9ef5403ae
-MD5 b1b97bcdf7c3177e8bcabc2c76eaa137 embassy-domainatrix-0.1.0-r2.ebuild 506
-RMD160 18f5b492b6cb30dac6710291458b465b094296f6 embassy-domainatrix-0.1.0-r2.ebuild 506
-SHA256 5e2f67ecd5c318925f7cd1b3726344f86f5b86b4da14a2bc5202e7b9ef5403ae embassy-domainatrix-0.1.0-r2.ebuild 506
 MISC ChangeLog 3874 RMD160 0c98ecac9e11b2ce11770c7e64b15d231418ca04 SHA1 a64b82b47f838e31d5ad9b99988f4c6fd0581775 SHA256 838c400d884f3d38f1223dbf78672e4ab5f842f7fd27a32b14c7daabe9b4a287
-MD5 421994cce3b7581760fc8da4b992b982 ChangeLog 3874
-RMD160 0c98ecac9e11b2ce11770c7e64b15d231418ca04 ChangeLog 3874
-SHA256 838c400d884f3d38f1223dbf78672e4ab5f842f7fd27a32b14c7daabe9b4a287 ChangeLog 3874
 MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
-MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
-RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
-SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
-MD5 0b9f712a2fc85b20f14102eb578422cb files/digest-embassy-domainatrix-0.1.0-r1 539
-RMD160 e3402b86c8c83bcd4a6aba48c6c2ce457e072ade files/digest-embassy-domainatrix-0.1.0-r1 539
-SHA256 86e8c129e02426f6782b65403055dc481f1017d5337c8058860f357bf1d72cf7 files/digest-embassy-domainatrix-0.1.0-r1 539
-MD5 9024fce2757c87b622df784ff71faa6b files/digest-embassy-domainatrix-0.1.0-r2 539
-RMD160 8ff4854968ab1e5dd49f1709ab2bcd3457ed2a2c files/digest-embassy-domainatrix-0.1.0-r2 539
-SHA256 564ba15b212f103bcacc59c50b68077763ccad92f2e71656203959d53e5eb6a0 files/digest-embassy-domainatrix-0.1.0-r2 539
diff --git a/sci-biology/embassy-domainatrix/files/digest-embassy-domainatrix-0.1.0-r1 b/sci-biology/embassy-domainatrix/files/digest-embassy-domainatrix-0.1.0-r1
deleted file mode 100644
index e51c275c70ad..000000000000
--- a/sci-biology/embassy-domainatrix/files/digest-embassy-domainatrix-0.1.0-r1
+++ /dev/null
@@ -1,6 +0,0 @@
-MD5 2ef912cfde4903129f2424d23d6da0d2 EMBOSS-4.0.0.tar.gz 17651607
-RMD160 5b29ac2946a1315928581bf0e40a0f6b5023c599 EMBOSS-4.0.0.tar.gz 17651607
-SHA256 bbfd127adc064a5211542f3b5400cbb13c7f74d9171fd16b8531cee9fd11b231 EMBOSS-4.0.0.tar.gz 17651607
-MD5 5893d3e5f101783050cbbc44766fe7d8 embassy-4.0.0-domainatrix-0.1.0.tar.gz 405474
-RMD160 65f60a617d1d59b2de530d7cdf0be6e77416a0b6 embassy-4.0.0-domainatrix-0.1.0.tar.gz 405474
-SHA256 efeb08f29cfd18a87fb54a448eb5b13a5805ae0d3a2d067563c8ff86feb1a1d7 embassy-4.0.0-domainatrix-0.1.0.tar.gz 405474
diff --git a/sci-biology/embassy-domainatrix/files/digest-embassy-domainatrix-0.1.0-r2 b/sci-biology/embassy-domainatrix/files/digest-embassy-domainatrix-0.1.0-r2
deleted file mode 100644
index c14abc33401b..000000000000
--- a/sci-biology/embassy-domainatrix/files/digest-embassy-domainatrix-0.1.0-r2
+++ /dev/null
@@ -1,6 +0,0 @@
-MD5 be4c895220ad34afd65d450ba7d8e34b EMBOSS-5.0.0.tar.gz 20666560
-RMD160 1bf510c0919d991e4ba67182137448dee49bab4d EMBOSS-5.0.0.tar.gz 20666560
-SHA256 64e6f09b82a719ff26de7f21fdf7d2bd605d2c664384c1c7b48f9d245d5f40ae EMBOSS-5.0.0.tar.gz 20666560
-MD5 0be3c59550e1e22924ea2540b11af275 embassy-5.0.0-domainatrix-0.1.0.tar.gz 420051
-RMD160 82ce385002a3dc70381a3d5e4d499eaade14bd89 embassy-5.0.0-domainatrix-0.1.0.tar.gz 420051
-SHA256 b81fde3ab329ab75482b341568ef2965d99803765438f3825688a0d2abc05ca6 embassy-5.0.0-domainatrix-0.1.0.tar.gz 420051
diff --git a/sci-biology/embassy-domalign/Manifest b/sci-biology/embassy-domalign/Manifest
index d996423245bd..11d3acff0eb7 100644
--- a/sci-biology/embassy-domalign/Manifest
+++ b/sci-biology/embassy-domalign/Manifest
@@ -3,24 +3,6 @@ DIST EMBOSS-5.0.0.tar.gz 20666560 RMD160 1bf510c0919d991e4ba67182137448dee49bab4
 DIST embassy-4.0.0-domalign-0.1.0.tar.gz 440714 RMD160 252202a6263d8da1166166610db836037f205ea3 SHA1 6f8aadc9acb479db4615e98da997d03e94e1500c SHA256 9abf35023e64229a103039d505bda23b0d3eef45d7cd79bdac14f2fe133764b6
 DIST embassy-5.0.0-domalign-0.1.0.tar.gz 460530 RMD160 272334d0cd08cd4efbd2001bd1c021f814c4d64c SHA1 dade9af4ac1d6f2bb721ac92bb1ab0452567ee0d SHA256 aa61cfc6da3cc478dd7f476537cdc6d966b00b90e2adedc709eb75e39e840c5c
 EBUILD embassy-domalign-0.1.0-r1.ebuild 497 RMD160 9468bea1f0ab43949b48df0c6a478684b23c1152 SHA1 167a8a45023a8d6bd8b548baf1d5a4524e30bafb SHA256 6ac7b96b139bd9b3dfd4321cd3fbcb63bac3d57ae72fdf55dfcabdb2aec23eb0
-MD5 0a264a40cafa3a58577d6635d9fa620a embassy-domalign-0.1.0-r1.ebuild 497
-RMD160 9468bea1f0ab43949b48df0c6a478684b23c1152 embassy-domalign-0.1.0-r1.ebuild 497
-SHA256 6ac7b96b139bd9b3dfd4321cd3fbcb63bac3d57ae72fdf55dfcabdb2aec23eb0 embassy-domalign-0.1.0-r1.ebuild 497
 EBUILD embassy-domalign-0.1.0-r2.ebuild 501 RMD160 35c64e46e2e2218f2de8a0b214f284c8e9b4dbcd SHA1 aa9f6820c2e823504ba996a1d9af51c97f2a4b06 SHA256 08ff1f9019e324248d7592a25d4805d77b80aa80c1894e01373b6ee2c171a955
-MD5 756827fb1ec42d67035d36743f88faba embassy-domalign-0.1.0-r2.ebuild 501
-RMD160 35c64e46e2e2218f2de8a0b214f284c8e9b4dbcd embassy-domalign-0.1.0-r2.ebuild 501
-SHA256 08ff1f9019e324248d7592a25d4805d77b80aa80c1894e01373b6ee2c171a955 embassy-domalign-0.1.0-r2.ebuild 501
 MISC ChangeLog 2056 RMD160 5cafe220c160fca91d1f6e9e04a73d97ac7d7550 SHA1 4927e064497b5c0a22378c04d92c25c317603f44 SHA256 ca22f3e360f833b19c132b4b8e940ae818089116d14e880e9e877a6c08ff4230
-MD5 e45719eb3c7830df8e249b1ac266162b ChangeLog 2056
-RMD160 5cafe220c160fca91d1f6e9e04a73d97ac7d7550 ChangeLog 2056
-SHA256 ca22f3e360f833b19c132b4b8e940ae818089116d14e880e9e877a6c08ff4230 ChangeLog 2056
 MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
-MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
-RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
-SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
-MD5 66e877ea6c16fb27dc21d717ab3b1288 files/digest-embassy-domalign-0.1.0-r1 530
-RMD160 131ec1a5977967f5add7a9210e95aa8f53b69923 files/digest-embassy-domalign-0.1.0-r1 530
-SHA256 ea36f98e2caaa06f47b4c22f4f1e6523a88af1e04c7c10cc253eb2a9b9a92aa4 files/digest-embassy-domalign-0.1.0-r1 530
-MD5 c61b3a7fb39b53befd0dcb92cd931faf files/digest-embassy-domalign-0.1.0-r2 530
-RMD160 7ab96eee8faca0fd268591eda30718d5677acffc files/digest-embassy-domalign-0.1.0-r2 530
-SHA256 7f9b3bf073575d99dee6c1aa5c1c49b2eddafc19a2bb5f01e58b0b1a5e1cca4e files/digest-embassy-domalign-0.1.0-r2 530
diff --git a/sci-biology/embassy-domalign/files/digest-embassy-domalign-0.1.0-r1 b/sci-biology/embassy-domalign/files/digest-embassy-domalign-0.1.0-r1
deleted file mode 100644
index 8a4b499e844f..000000000000
--- a/sci-biology/embassy-domalign/files/digest-embassy-domalign-0.1.0-r1
+++ /dev/null
@@ -1,6 +0,0 @@
-MD5 2ef912cfde4903129f2424d23d6da0d2 EMBOSS-4.0.0.tar.gz 17651607
-RMD160 5b29ac2946a1315928581bf0e40a0f6b5023c599 EMBOSS-4.0.0.tar.gz 17651607
-SHA256 bbfd127adc064a5211542f3b5400cbb13c7f74d9171fd16b8531cee9fd11b231 EMBOSS-4.0.0.tar.gz 17651607
-MD5 38ab9e0a0158cf923668d0e863606b54 embassy-4.0.0-domalign-0.1.0.tar.gz 440714
-RMD160 252202a6263d8da1166166610db836037f205ea3 embassy-4.0.0-domalign-0.1.0.tar.gz 440714
-SHA256 9abf35023e64229a103039d505bda23b0d3eef45d7cd79bdac14f2fe133764b6 embassy-4.0.0-domalign-0.1.0.tar.gz 440714
diff --git a/sci-biology/embassy-domalign/files/digest-embassy-domalign-0.1.0-r2 b/sci-biology/embassy-domalign/files/digest-embassy-domalign-0.1.0-r2
deleted file mode 100644
index b223f981a22f..000000000000
--- a/sci-biology/embassy-domalign/files/digest-embassy-domalign-0.1.0-r2
+++ /dev/null
@@ -1,6 +0,0 @@
-MD5 be4c895220ad34afd65d450ba7d8e34b EMBOSS-5.0.0.tar.gz 20666560
-RMD160 1bf510c0919d991e4ba67182137448dee49bab4d EMBOSS-5.0.0.tar.gz 20666560
-SHA256 64e6f09b82a719ff26de7f21fdf7d2bd605d2c664384c1c7b48f9d245d5f40ae EMBOSS-5.0.0.tar.gz 20666560
-MD5 e5d004c1223116abaebb6657ae4a80fa embassy-5.0.0-domalign-0.1.0.tar.gz 460530
-RMD160 272334d0cd08cd4efbd2001bd1c021f814c4d64c embassy-5.0.0-domalign-0.1.0.tar.gz 460530
-SHA256 aa61cfc6da3cc478dd7f476537cdc6d966b00b90e2adedc709eb75e39e840c5c embassy-5.0.0-domalign-0.1.0.tar.gz 460530
diff --git a/sci-biology/embassy-domsearch/Manifest b/sci-biology/embassy-domsearch/Manifest
index 7a73a5219e08..3558b1b3b47b 100644
--- a/sci-biology/embassy-domsearch/Manifest
+++ b/sci-biology/embassy-domsearch/Manifest
@@ -3,24 +3,6 @@ DIST EMBOSS-5.0.0.tar.gz 20666560 RMD160 1bf510c0919d991e4ba67182137448dee49bab4
 DIST embassy-4.0.0-domsearch-0.1.0.tar.gz 452839 RMD160 8e7821127b1234708f9b03da9bdbca38e21666f2 SHA1 079fd2e08629560b84eac46fad5716968e9ebb9c SHA256 d285d85b18dc34062a2c1ff3ec57bae552782ad982ca9cb0f7e5481e862fbbe3
 DIST embassy-5.0.0-domsearch-0.1.0.tar.gz 469776 RMD160 3e6fcdb1b209280026099408be06502f91c1c1fa SHA1 c730c28b1440509d178daeb75d1317823990e4ad SHA256 23e069161ec56df5eab5fc491ca3493c056cfee42f2e05f1b5ef258498792a87
 EBUILD embassy-domsearch-0.1.0-r1.ebuild 496 RMD160 b7cd5602c9a91d422e20fb03480e83731e2440f2 SHA1 8303b12497217a7cc9caea9e125b2f42cf1bbf0a SHA256 34c86ebf907e061b421532dfc96a8ea7d9cd83b79152896cefae4062812d7c48
-MD5 9bff4dc1e1b1d299ca3cb7e7ccddec16 embassy-domsearch-0.1.0-r1.ebuild 496
-RMD160 b7cd5602c9a91d422e20fb03480e83731e2440f2 embassy-domsearch-0.1.0-r1.ebuild 496
-SHA256 34c86ebf907e061b421532dfc96a8ea7d9cd83b79152896cefae4062812d7c48 embassy-domsearch-0.1.0-r1.ebuild 496
 EBUILD embassy-domsearch-0.1.0-r2.ebuild 500 RMD160 8527d7ec0e023a717ce42f82624d217f76b2800c SHA1 e162cfbb738668db17dbff4f17ed31460fa1bca8 SHA256 5a337d54cec2f9c8734f658de9013620ee50b682cb6c328cc78cecd1ddd8bd3f
-MD5 b7e9d69f9fbf77fbae60770278de53f1 embassy-domsearch-0.1.0-r2.ebuild 500
-RMD160 8527d7ec0e023a717ce42f82624d217f76b2800c embassy-domsearch-0.1.0-r2.ebuild 500
-SHA256 5a337d54cec2f9c8734f658de9013620ee50b682cb6c328cc78cecd1ddd8bd3f embassy-domsearch-0.1.0-r2.ebuild 500
 MISC ChangeLog 1979 RMD160 ce5f0c8c8412fe9f92389561f4923baa6e8ce0cb SHA1 825d9e335a5abd633a87a3801bd4212ae6d43829 SHA256 7e18908f83d7d76b33503220d4e62483684cc8f85fa91cda359f56350c7865d4
-MD5 9e676d93885f2cb4c6ad1dd255de0ed7 ChangeLog 1979
-RMD160 ce5f0c8c8412fe9f92389561f4923baa6e8ce0cb ChangeLog 1979
-SHA256 7e18908f83d7d76b33503220d4e62483684cc8f85fa91cda359f56350c7865d4 ChangeLog 1979
 MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
-MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
-RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
-SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
-MD5 75d88b819b724e89e9035dbc61609fc4 files/digest-embassy-domsearch-0.1.0-r1 533
-RMD160 c1466bb87582f9e14244e316414855ed23703742 files/digest-embassy-domsearch-0.1.0-r1 533
-SHA256 0a4d385ea97dec7f17c2b2eb2fd2a49628bad04297bad2a48017511f0035c586 files/digest-embassy-domsearch-0.1.0-r1 533
-MD5 57d473189042e73a89375318f8b572a5 files/digest-embassy-domsearch-0.1.0-r2 533
-RMD160 f93cd10b82413adc26161d0d563828d98d6335ea files/digest-embassy-domsearch-0.1.0-r2 533
-SHA256 c2bf558d4ccb63367b2ff0425bfb46ef9f5d0634ac93b365a9194975763faff0 files/digest-embassy-domsearch-0.1.0-r2 533
diff --git a/sci-biology/embassy-domsearch/files/digest-embassy-domsearch-0.1.0-r1 b/sci-biology/embassy-domsearch/files/digest-embassy-domsearch-0.1.0-r1
deleted file mode 100644
index 295864ec80bb..000000000000
--- a/sci-biology/embassy-domsearch/files/digest-embassy-domsearch-0.1.0-r1
+++ /dev/null
@@ -1,6 +0,0 @@
-MD5 2ef912cfde4903129f2424d23d6da0d2 EMBOSS-4.0.0.tar.gz 17651607
-RMD160 5b29ac2946a1315928581bf0e40a0f6b5023c599 EMBOSS-4.0.0.tar.gz 17651607
-SHA256 bbfd127adc064a5211542f3b5400cbb13c7f74d9171fd16b8531cee9fd11b231 EMBOSS-4.0.0.tar.gz 17651607
-MD5 d214f124dd2806aa2eb163682dc7be7f embassy-4.0.0-domsearch-0.1.0.tar.gz 452839
-RMD160 8e7821127b1234708f9b03da9bdbca38e21666f2 embassy-4.0.0-domsearch-0.1.0.tar.gz 452839
-SHA256 d285d85b18dc34062a2c1ff3ec57bae552782ad982ca9cb0f7e5481e862fbbe3 embassy-4.0.0-domsearch-0.1.0.tar.gz 452839
diff --git a/sci-biology/embassy-domsearch/files/digest-embassy-domsearch-0.1.0-r2 b/sci-biology/embassy-domsearch/files/digest-embassy-domsearch-0.1.0-r2
deleted file mode 100644
index c557c311a5f8..000000000000
--- a/sci-biology/embassy-domsearch/files/digest-embassy-domsearch-0.1.0-r2
+++ /dev/null
@@ -1,6 +0,0 @@
-MD5 be4c895220ad34afd65d450ba7d8e34b EMBOSS-5.0.0.tar.gz 20666560
-RMD160 1bf510c0919d991e4ba67182137448dee49bab4d EMBOSS-5.0.0.tar.gz 20666560
-SHA256 64e6f09b82a719ff26de7f21fdf7d2bd605d2c664384c1c7b48f9d245d5f40ae EMBOSS-5.0.0.tar.gz 20666560
-MD5 778ab15bce09a6440fc6859b3a27157d embassy-5.0.0-domsearch-0.1.0.tar.gz 469776
-RMD160 3e6fcdb1b209280026099408be06502f91c1c1fa embassy-5.0.0-domsearch-0.1.0.tar.gz 469776
-SHA256 23e069161ec56df5eab5fc491ca3493c056cfee42f2e05f1b5ef258498792a87 embassy-5.0.0-domsearch-0.1.0.tar.gz 469776
diff --git a/sci-biology/embassy-emnu/Manifest b/sci-biology/embassy-emnu/Manifest
index 3169d79c3b32..e19e5f00aaa5 100644
--- a/sci-biology/embassy-emnu/Manifest
+++ b/sci-biology/embassy-emnu/Manifest
@@ -3,24 +3,6 @@ DIST EMBOSS-5.0.0.tar.gz 20666560 RMD160 1bf510c0919d991e4ba67182137448dee49bab4
 DIST embassy-4.0.0-emnu-1.05.tar.gz 377734 RMD160 7c82e48085b711e27d026476f73524f9afac3275 SHA1 f1f361e4049a22c9e15f472bf080af330fa12eb1 SHA256 f826eb3e8a782ba00f5e565015468fd2032d43ac9800fe31634f4ec107a7bd01
 DIST embassy-5.0.0-emnu-1.05.tar.gz 389665 RMD160 c4bc1a3d678355d5fcfd2504b57df02de9cd4e68 SHA1 d11b2c5e394e2e6d1bb85491df68978ff40f2c9d SHA256 56a55f336b0083ecfd2fd2dae0613f46e802eacb3214c16fc1966e6516795b95
 EBUILD embassy-emnu-1.05-r3.ebuild 576 RMD160 a92e68bdec1e66a389fb591199b22509090efc29 SHA1 d76d4b609a4acf917cf8788c5487477b6c419299 SHA256 e7713b04a76d50cbf6398355e9ada42cdd403099040afe548b38d90d3252f25f
-MD5 5615fda3c619e264b43c3cd4205adbc1 embassy-emnu-1.05-r3.ebuild 576
-RMD160 a92e68bdec1e66a389fb591199b22509090efc29 embassy-emnu-1.05-r3.ebuild 576
-SHA256 e7713b04a76d50cbf6398355e9ada42cdd403099040afe548b38d90d3252f25f embassy-emnu-1.05-r3.ebuild 576
 EBUILD embassy-emnu-1.05-r4.ebuild 580 RMD160 6c7fc5e13eab1b55b3d35f744112d9c9f881c47e SHA1 340412d3c34df9a11a36836fae0e38042566d9bb SHA256 8c1da43abd87ff700ac3185458367d4ce9fa7478a3952aa1810173582976a317
-MD5 c832ee8f36d3a513198f5a00323a5e04 embassy-emnu-1.05-r4.ebuild 580
-RMD160 6c7fc5e13eab1b55b3d35f744112d9c9f881c47e embassy-emnu-1.05-r4.ebuild 580
-SHA256 8c1da43abd87ff700ac3185458367d4ce9fa7478a3952aa1810173582976a317 embassy-emnu-1.05-r4.ebuild 580
 MISC ChangeLog 3440 RMD160 e11bc29e843264ce6c5128b91386ee74db47f4ca SHA1 5ab2cc0400fe9cc75a7f1f64e7160d3afe99de53 SHA256 046bf9f8b45619537f80fa1e76c9c4bb1d0e5f41c29af2a554f63b05bf0b92a9
-MD5 0b17402c31bb4f797c7e070d25f74bb0 ChangeLog 3440
-RMD160 e11bc29e843264ce6c5128b91386ee74db47f4ca ChangeLog 3440
-SHA256 046bf9f8b45619537f80fa1e76c9c4bb1d0e5f41c29af2a554f63b05bf0b92a9 ChangeLog 3440
 MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
-MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
-RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
-SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
-MD5 18357091c97bcd9643e341a032072a23 files/digest-embassy-emnu-1.05-r3 515
-RMD160 96657fb675975bf5b3ed1ff193b9132a8e79fd16 files/digest-embassy-emnu-1.05-r3 515
-SHA256 30702bcb43c0d005090a6925d3147136263dcb82a65e4c6da52e3f1de2c97c4f files/digest-embassy-emnu-1.05-r3 515
-MD5 d1043ce6a9f4bca68f955b61a56f4ed0 files/digest-embassy-emnu-1.05-r4 515
-RMD160 a10077c35dd0d2c32ebeb81e6be8ec2d3b63afb6 files/digest-embassy-emnu-1.05-r4 515
-SHA256 b61ee92ae1ba4c087ae1b7df9690418a580b985ac5e3af455c82b081c33e9f0c files/digest-embassy-emnu-1.05-r4 515
diff --git a/sci-biology/embassy-emnu/files/digest-embassy-emnu-1.05-r3 b/sci-biology/embassy-emnu/files/digest-embassy-emnu-1.05-r3
deleted file mode 100644
index 330da100ca2c..000000000000
--- a/sci-biology/embassy-emnu/files/digest-embassy-emnu-1.05-r3
+++ /dev/null
@@ -1,6 +0,0 @@
-MD5 2ef912cfde4903129f2424d23d6da0d2 EMBOSS-4.0.0.tar.gz 17651607
-RMD160 5b29ac2946a1315928581bf0e40a0f6b5023c599 EMBOSS-4.0.0.tar.gz 17651607
-SHA256 bbfd127adc064a5211542f3b5400cbb13c7f74d9171fd16b8531cee9fd11b231 EMBOSS-4.0.0.tar.gz 17651607
-MD5 3ef6e2ac28f55b167b7f2f3614015618 embassy-4.0.0-emnu-1.05.tar.gz 377734
-RMD160 7c82e48085b711e27d026476f73524f9afac3275 embassy-4.0.0-emnu-1.05.tar.gz 377734
-SHA256 f826eb3e8a782ba00f5e565015468fd2032d43ac9800fe31634f4ec107a7bd01 embassy-4.0.0-emnu-1.05.tar.gz 377734
diff --git a/sci-biology/embassy-emnu/files/digest-embassy-emnu-1.05-r4 b/sci-biology/embassy-emnu/files/digest-embassy-emnu-1.05-r4
deleted file mode 100644
index 2805e0aecb29..000000000000
--- a/sci-biology/embassy-emnu/files/digest-embassy-emnu-1.05-r4
+++ /dev/null
@@ -1,6 +0,0 @@
-MD5 be4c895220ad34afd65d450ba7d8e34b EMBOSS-5.0.0.tar.gz 20666560
-RMD160 1bf510c0919d991e4ba67182137448dee49bab4d EMBOSS-5.0.0.tar.gz 20666560
-SHA256 64e6f09b82a719ff26de7f21fdf7d2bd605d2c664384c1c7b48f9d245d5f40ae EMBOSS-5.0.0.tar.gz 20666560
-MD5 64d8b9c2cd1a566aebb3355eb684bd35 embassy-5.0.0-emnu-1.05.tar.gz 389665
-RMD160 c4bc1a3d678355d5fcfd2504b57df02de9cd4e68 embassy-5.0.0-emnu-1.05.tar.gz 389665
-SHA256 56a55f336b0083ecfd2fd2dae0613f46e802eacb3214c16fc1966e6516795b95 embassy-5.0.0-emnu-1.05.tar.gz 389665
diff --git a/sci-biology/embassy-esim4/Manifest b/sci-biology/embassy-esim4/Manifest
index 00dbd24e5724..21935abf7139 100644
--- a/sci-biology/embassy-esim4/Manifest
+++ b/sci-biology/embassy-esim4/Manifest
@@ -3,24 +3,6 @@ DIST EMBOSS-5.0.0.tar.gz 20666560 RMD160 1bf510c0919d991e4ba67182137448dee49bab4
 DIST embassy-4.0.0-esim4-1.0.0.tar.gz 417724 RMD160 76aaffa27b6a20c5734ec575346f58428974c36e SHA1 6eacc97c88681ad3944fee31af0d78bb21323119 SHA256 94c864bc0c2d12b01987f098470437b0535b4f8d2a7a275d29e4034ee07ebe7e
 DIST embassy-5.0.0-esim4-1.0.0.tar.gz 431329 RMD160 0197e53eec6e7813d94652152af87d9e20001c56 SHA1 2af73117aff58ac80c70744766e086c6465680f1 SHA256 eee1cc8fef40e19fab74b16f1c1cb0883a49561eb9fdc2075f428085c6722bda
 EBUILD embassy-esim4-1.0.0-r3.ebuild 510 RMD160 e15b8d20a978665a4625dbf36fba657723e929ba SHA1 fcdf6c989b7a3552b1e512def8f4435164cef738 SHA256 fe7d717fd669b471db5b87e0b5dfa6fdc2efdfdd002b7969f348571ca6e42302
-MD5 71fdea3ef4f5709f4969ccd5ca9aa9d1 embassy-esim4-1.0.0-r3.ebuild 510
-RMD160 e15b8d20a978665a4625dbf36fba657723e929ba embassy-esim4-1.0.0-r3.ebuild 510
-SHA256 fe7d717fd669b471db5b87e0b5dfa6fdc2efdfdd002b7969f348571ca6e42302 embassy-esim4-1.0.0-r3.ebuild 510
 EBUILD embassy-esim4-1.0.0-r4.ebuild 514 RMD160 21279d5b88fbee161b15a603bc3572bce22ae0e1 SHA1 30cf9dfbf3052b37ccae80aae2cb5df12baa3bd2 SHA256 5873c1ac6cb62df928c7c57ab951b2e0455757872014c845b483a10a8ebcb0a6
-MD5 174e668279f6b8a68b4582b526b01eea embassy-esim4-1.0.0-r4.ebuild 514
-RMD160 21279d5b88fbee161b15a603bc3572bce22ae0e1 embassy-esim4-1.0.0-r4.ebuild 514
-SHA256 5873c1ac6cb62df928c7c57ab951b2e0455757872014c845b483a10a8ebcb0a6 embassy-esim4-1.0.0-r4.ebuild 514
 MISC ChangeLog 3355 RMD160 a140a37b954eae41d5dcd6341a6341d00fa4baa8 SHA1 21a0935ad19c57aa4392019f6a11a3ab211b9fc1 SHA256 c786e9f6e98cf1e2bbfb6a9bbbe929f28285d92d4367436be01bfebad575bbba
-MD5 185ffd152f15402508cfc2964f9279da ChangeLog 3355
-RMD160 a140a37b954eae41d5dcd6341a6341d00fa4baa8 ChangeLog 3355
-SHA256 c786e9f6e98cf1e2bbfb6a9bbbe929f28285d92d4367436be01bfebad575bbba ChangeLog 3355
 MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
-MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
-RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
-SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
-MD5 3bb009156cb634a0497a2070cf820484 files/digest-embassy-esim4-1.0.0-r3 521
-RMD160 038cc50fdc97a4ace5a0bd30b6341a305defa01e files/digest-embassy-esim4-1.0.0-r3 521
-SHA256 fcc3e49ac89fb24810064bb2151fc51f5992450808d8b5534b49eef33fedd3f8 files/digest-embassy-esim4-1.0.0-r3 521
-MD5 a29845a596899351d6b83db0541ff9ed files/digest-embassy-esim4-1.0.0-r4 521
-RMD160 e88712d4fb57dba03faae2ca13d933b984806e52 files/digest-embassy-esim4-1.0.0-r4 521
-SHA256 c30b6278e7446543f4b8f30809cd031140085e6ff00f88cd8eaa09e3f2add284 files/digest-embassy-esim4-1.0.0-r4 521
diff --git a/sci-biology/embassy-esim4/files/digest-embassy-esim4-1.0.0-r3 b/sci-biology/embassy-esim4/files/digest-embassy-esim4-1.0.0-r3
deleted file mode 100644
index a9f1b556b3c0..000000000000
--- a/sci-biology/embassy-esim4/files/digest-embassy-esim4-1.0.0-r3
+++ /dev/null
@@ -1,6 +0,0 @@
-MD5 2ef912cfde4903129f2424d23d6da0d2 EMBOSS-4.0.0.tar.gz 17651607
-RMD160 5b29ac2946a1315928581bf0e40a0f6b5023c599 EMBOSS-4.0.0.tar.gz 17651607
-SHA256 bbfd127adc064a5211542f3b5400cbb13c7f74d9171fd16b8531cee9fd11b231 EMBOSS-4.0.0.tar.gz 17651607
-MD5 35b0f661043bd9c03aaba22f7bffc321 embassy-4.0.0-esim4-1.0.0.tar.gz 417724
-RMD160 76aaffa27b6a20c5734ec575346f58428974c36e embassy-4.0.0-esim4-1.0.0.tar.gz 417724
-SHA256 94c864bc0c2d12b01987f098470437b0535b4f8d2a7a275d29e4034ee07ebe7e embassy-4.0.0-esim4-1.0.0.tar.gz 417724
diff --git a/sci-biology/embassy-esim4/files/digest-embassy-esim4-1.0.0-r4 b/sci-biology/embassy-esim4/files/digest-embassy-esim4-1.0.0-r4
deleted file mode 100644
index ab450b7e97db..000000000000
--- a/sci-biology/embassy-esim4/files/digest-embassy-esim4-1.0.0-r4
+++ /dev/null
@@ -1,6 +0,0 @@
-MD5 be4c895220ad34afd65d450ba7d8e34b EMBOSS-5.0.0.tar.gz 20666560
-RMD160 1bf510c0919d991e4ba67182137448dee49bab4d EMBOSS-5.0.0.tar.gz 20666560
-SHA256 64e6f09b82a719ff26de7f21fdf7d2bd605d2c664384c1c7b48f9d245d5f40ae EMBOSS-5.0.0.tar.gz 20666560
-MD5 ee65d0da0f2d75959f370b13f2218c1c embassy-5.0.0-esim4-1.0.0.tar.gz 431329
-RMD160 0197e53eec6e7813d94652152af87d9e20001c56 embassy-5.0.0-esim4-1.0.0.tar.gz 431329
-SHA256 eee1cc8fef40e19fab74b16f1c1cb0883a49561eb9fdc2075f428085c6722bda embassy-5.0.0-esim4-1.0.0.tar.gz 431329
diff --git a/sci-biology/embassy-hmmer/Manifest b/sci-biology/embassy-hmmer/Manifest
index 81b6ebf7987f..2b2342228af9 100644
--- a/sci-biology/embassy-hmmer/Manifest
+++ b/sci-biology/embassy-hmmer/Manifest
@@ -3,24 +3,6 @@ DIST EMBOSS-5.0.0.tar.gz 20666560 RMD160 1bf510c0919d991e4ba67182137448dee49bab4
 DIST embassy-4.0.0-hmmer-2.3.2.tar.gz 546870 RMD160 2bde7ce9240fdeb1c1f14440f56db02266ac52c1 SHA1 0ec3aa902129bf5d028dc4806e030240db6de2a0 SHA256 87c2ac5ae9d62bbf5e60c7b61f777ac0790b74a1ac825ac7960d29b11ae5f7c7
 DIST embassy-5.0.0-hmmer-2.3.2.tar.gz 565223 RMD160 c36c09c74823645e9b557576692646731223ac1b SHA1 5c89b094ea7da9afeee2f7cfe853eb4aa6ac0f03 SHA256 31bbcca1f71b82170a65c4438f9cb9f1dfe3d4e066037a852060b010e3e39b5b
 EBUILD embassy-hmmer-2.3.2-r1.ebuild 618 RMD160 f34b891816ce2c36fcb1da2cf78543c3d75f8973 SHA1 7660f6d89f757de19a634914963dda9a92d5c581 SHA256 3068c439740e54869a6b8d0f7419808c8bdb7176e0f862cc17df0798fa215b6d
-MD5 40e5fc2fdd3c828bbb48bfb981313905 embassy-hmmer-2.3.2-r1.ebuild 618
-RMD160 f34b891816ce2c36fcb1da2cf78543c3d75f8973 embassy-hmmer-2.3.2-r1.ebuild 618
-SHA256 3068c439740e54869a6b8d0f7419808c8bdb7176e0f862cc17df0798fa215b6d embassy-hmmer-2.3.2-r1.ebuild 618
 EBUILD embassy-hmmer-2.3.2.ebuild 611 RMD160 ea12619ec0b049ed4d4c8d8d9a302d747b4a86bc SHA1 46466abd3b1beebf4513f342ec3718880aa53759 SHA256 de9712ae5948d1c5458898b26d9b2c32562b876a8f1411201cf29726b25c3fa2
-MD5 0ae1bebfdbca4e1379083754952409f2 embassy-hmmer-2.3.2.ebuild 611
-RMD160 ea12619ec0b049ed4d4c8d8d9a302d747b4a86bc embassy-hmmer-2.3.2.ebuild 611
-SHA256 de9712ae5948d1c5458898b26d9b2c32562b876a8f1411201cf29726b25c3fa2 embassy-hmmer-2.3.2.ebuild 611
 MISC ChangeLog 3471 RMD160 7129a2e1b0194e1f848a1cfe7186b6ef58729fbc SHA1 bf5c6391082e66e7d4e907044de51b1ff18f40f5 SHA256 094346d6dd96479f227dab1b0abb55e034da69cc8d8536da81dd13991cf3580c
-MD5 67b13c189bfccd4eba46acb189568c00 ChangeLog 3471
-RMD160 7129a2e1b0194e1f848a1cfe7186b6ef58729fbc ChangeLog 3471
-SHA256 094346d6dd96479f227dab1b0abb55e034da69cc8d8536da81dd13991cf3580c ChangeLog 3471
 MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
-MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
-RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
-SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
-MD5 40977961efafcca7738c76f763135539 files/digest-embassy-hmmer-2.3.2 521
-RMD160 c2cbfa68d69f4481b22099c9b4ae3242b5a3a7e9 files/digest-embassy-hmmer-2.3.2 521
-SHA256 2676f217bb2afc1118f9068c0317d5e48ce4c7319a263660806a7fb1d5a40531 files/digest-embassy-hmmer-2.3.2 521
-MD5 c39d3f7351eba167ca1b32cf5a755938 files/digest-embassy-hmmer-2.3.2-r1 521
-RMD160 d91e719ca2d72ab44d9553b4c8ec2f68a191b9a8 files/digest-embassy-hmmer-2.3.2-r1 521
-SHA256 d5393410b8a38a21f2f55f3ab068d9d8eaac7f3c84381037b2b63ae5c8698f74 files/digest-embassy-hmmer-2.3.2-r1 521
diff --git a/sci-biology/embassy-hmmer/files/digest-embassy-hmmer-2.3.2 b/sci-biology/embassy-hmmer/files/digest-embassy-hmmer-2.3.2
deleted file mode 100644
index 98afe222e94c..000000000000
--- a/sci-biology/embassy-hmmer/files/digest-embassy-hmmer-2.3.2
+++ /dev/null
@@ -1,6 +0,0 @@
-MD5 2ef912cfde4903129f2424d23d6da0d2 EMBOSS-4.0.0.tar.gz 17651607
-RMD160 5b29ac2946a1315928581bf0e40a0f6b5023c599 EMBOSS-4.0.0.tar.gz 17651607
-SHA256 bbfd127adc064a5211542f3b5400cbb13c7f74d9171fd16b8531cee9fd11b231 EMBOSS-4.0.0.tar.gz 17651607
-MD5 967454c708ecaa0cbd47deda66b78e65 embassy-4.0.0-hmmer-2.3.2.tar.gz 546870
-RMD160 2bde7ce9240fdeb1c1f14440f56db02266ac52c1 embassy-4.0.0-hmmer-2.3.2.tar.gz 546870
-SHA256 87c2ac5ae9d62bbf5e60c7b61f777ac0790b74a1ac825ac7960d29b11ae5f7c7 embassy-4.0.0-hmmer-2.3.2.tar.gz 546870
diff --git a/sci-biology/embassy-hmmer/files/digest-embassy-hmmer-2.3.2-r1 b/sci-biology/embassy-hmmer/files/digest-embassy-hmmer-2.3.2-r1
deleted file mode 100644
index c86b987b7a0b..000000000000
--- a/sci-biology/embassy-hmmer/files/digest-embassy-hmmer-2.3.2-r1
+++ /dev/null
@@ -1,6 +0,0 @@
-MD5 be4c895220ad34afd65d450ba7d8e34b EMBOSS-5.0.0.tar.gz 20666560
-RMD160 1bf510c0919d991e4ba67182137448dee49bab4d EMBOSS-5.0.0.tar.gz 20666560
-SHA256 64e6f09b82a719ff26de7f21fdf7d2bd605d2c664384c1c7b48f9d245d5f40ae EMBOSS-5.0.0.tar.gz 20666560
-MD5 3aa5707db81854f2674bf27aaeb1362e embassy-5.0.0-hmmer-2.3.2.tar.gz 565223
-RMD160 c36c09c74823645e9b557576692646731223ac1b embassy-5.0.0-hmmer-2.3.2.tar.gz 565223
-SHA256 31bbcca1f71b82170a65c4438f9cb9f1dfe3d4e066037a852060b010e3e39b5b embassy-5.0.0-hmmer-2.3.2.tar.gz 565223
diff --git a/sci-biology/embassy-meme/Manifest b/sci-biology/embassy-meme/Manifest
index 2abc32eef131..e8fe593fa886 100644
--- a/sci-biology/embassy-meme/Manifest
+++ b/sci-biology/embassy-meme/Manifest
@@ -1,27 +1,5 @@
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
-
 DIST EMBOSS-5.0.0.tar.gz 20666560 RMD160 1bf510c0919d991e4ba67182137448dee49bab4d SHA1 1ad4edc4808a8225fe8d574e8a7d0686be99cac6 SHA256 64e6f09b82a719ff26de7f21fdf7d2bd605d2c664384c1c7b48f9d245d5f40ae
 DIST embassy-5.0.0-meme-0.1.0.tar.gz 448413 RMD160 eb5ac6315bf33190133f7f9df626ec58ccbf9de0 SHA1 21fdebf9a294aa0bdad70317c0c11f61e79e0cf9 SHA256 ed4c02010af036515203661c28776b5e773e77eccad59990b7ac1410399d45ef
 EBUILD embassy-meme-0.1.0.ebuild 606 RMD160 f69d3ae8a043f0986d7432329bb031f4d8ecf614 SHA1 807d908f3f60f8988d40802f67fcec8a84adf622 SHA256 b0ed06ff0432865685f43c29470e785105125d6528729b8a236065951eff981d
-MD5 8b42bb814fb9285e54cde7f754b2e226 embassy-meme-0.1.0.ebuild 606
-RMD160 f69d3ae8a043f0986d7432329bb031f4d8ecf614 embassy-meme-0.1.0.ebuild 606
-SHA256 b0ed06ff0432865685f43c29470e785105125d6528729b8a236065951eff981d embassy-meme-0.1.0.ebuild 606
 MISC ChangeLog 435 RMD160 eeae1ff91af3450383c8807a538a1bbd5f8d7f17 SHA1 a1bc47723f6f796d3dc8b2ac342a5560c305b1bb SHA256 bb1aaf15f8c483eb57fbabb170d9416a4c1d61493d6338395a27e58f726d5a6f
-MD5 223a4cb5735709758afbe0fe627eb44d ChangeLog 435
-RMD160 eeae1ff91af3450383c8807a538a1bbd5f8d7f17 ChangeLog 435
-SHA256 bb1aaf15f8c483eb57fbabb170d9416a4c1d61493d6338395a27e58f726d5a6f ChangeLog 435
 MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
-MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
-RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
-SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
-MD5 7e988e6e7f835b7a77269e05d4a734b4 files/digest-embassy-meme-0.1.0 518
-RMD160 f48db90a6b690617d5667985f522266de62823ea files/digest-embassy-meme-0.1.0 518
-SHA256 4b2bbc83111dfebd8704e18be082fe24ebdd5398df795eb99bb223c30ebc52c7 files/digest-embassy-meme-0.1.0 518
------BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.5 (GNU/Linux)
-
-iD8DBQFGn+Yx/ejvha5XGaMRAosjAJ9/YM81EoJIrkpxZGg0wltzdX7jIgCgw0Bc
-6BYSoqzu66RWXXP61oXVzSQ=
-=imk/
------END PGP SIGNATURE-----
diff --git a/sci-biology/embassy-meme/files/digest-embassy-meme-0.1.0 b/sci-biology/embassy-meme/files/digest-embassy-meme-0.1.0
deleted file mode 100644
index 915171d5b5b6..000000000000
--- a/sci-biology/embassy-meme/files/digest-embassy-meme-0.1.0
+++ /dev/null
@@ -1,6 +0,0 @@
-MD5 be4c895220ad34afd65d450ba7d8e34b EMBOSS-5.0.0.tar.gz 20666560
-RMD160 1bf510c0919d991e4ba67182137448dee49bab4d EMBOSS-5.0.0.tar.gz 20666560
-SHA256 64e6f09b82a719ff26de7f21fdf7d2bd605d2c664384c1c7b48f9d245d5f40ae EMBOSS-5.0.0.tar.gz 20666560
-MD5 d304f3b8a8e15af4dfa7b295655d80ec embassy-5.0.0-meme-0.1.0.tar.gz 448413
-RMD160 eb5ac6315bf33190133f7f9df626ec58ccbf9de0 embassy-5.0.0-meme-0.1.0.tar.gz 448413
-SHA256 ed4c02010af036515203661c28776b5e773e77eccad59990b7ac1410399d45ef embassy-5.0.0-meme-0.1.0.tar.gz 448413
diff --git a/sci-biology/embassy-memenew/Manifest b/sci-biology/embassy-memenew/Manifest
index 59d6c547f3e2..e48c3211ad79 100644
--- a/sci-biology/embassy-memenew/Manifest
+++ b/sci-biology/embassy-memenew/Manifest
@@ -1,17 +1,5 @@
 DIST EMBOSS-4.0.0.tar.gz 17651607 RMD160 5b29ac2946a1315928581bf0e40a0f6b5023c599 SHA1 784c729f2d2e746339a90048277c9e4f052e036a SHA256 bbfd127adc064a5211542f3b5400cbb13c7f74d9171fd16b8531cee9fd11b231
 DIST embassy-4.0.0-memenew-0.1.0.tar.gz 423254 RMD160 c9aadf1985ff98cca4db6059a4923e4f1b1f3a55 SHA1 bc086306419f7b147c4058dbc5dd4d0f984e4273 SHA256 c7eb382a80595d6af95f51214c232c4bc6a54c6cc52ff2ea0bc36c26349b6068
 EBUILD embassy-memenew-0.1.0.ebuild 608 RMD160 a4ab94bbd10f6facf33fa51c18ee175c0edb3f3b SHA1 f4b6cdf3f90ad49979eecee33f9446067e511320 SHA256 daa9a61272a4928679ac5e98535bec2f1c1d29d6ce9457cb75e9521fcfdb4a20
-MD5 18a4f34acab787d48945e5374b095f42 embassy-memenew-0.1.0.ebuild 608
-RMD160 a4ab94bbd10f6facf33fa51c18ee175c0edb3f3b embassy-memenew-0.1.0.ebuild 608
-SHA256 daa9a61272a4928679ac5e98535bec2f1c1d29d6ce9457cb75e9521fcfdb4a20 embassy-memenew-0.1.0.ebuild 608
 MISC ChangeLog 879 RMD160 4b67a110956c0db1afa2c2dece70e8a458e81fe6 SHA1 2179367e84731d75c8a7fd844be051cbcfa51c51 SHA256 cbdf25405bac673705bbeb1a7bb916e86a9d6d1a5421ed6457abad0ecbab225b
-MD5 dbc879ec38a4735847f8fd073c4abafe ChangeLog 879
-RMD160 4b67a110956c0db1afa2c2dece70e8a458e81fe6 ChangeLog 879
-SHA256 cbdf25405bac673705bbeb1a7bb916e86a9d6d1a5421ed6457abad0ecbab225b ChangeLog 879
 MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
-MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
-RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
-SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
-MD5 be1522b19dfaddc38d18da167cd18a6c files/digest-embassy-memenew-0.1.0 527
-RMD160 07f1dc323ac37f45d1c9c66c52bce7d4f29c2c06 files/digest-embassy-memenew-0.1.0 527
-SHA256 d82eef4b8de2951a686da2aa990f55cbc65e52482d7fbe214f785db76af4f3b4 files/digest-embassy-memenew-0.1.0 527
diff --git a/sci-biology/embassy-memenew/files/digest-embassy-memenew-0.1.0 b/sci-biology/embassy-memenew/files/digest-embassy-memenew-0.1.0
deleted file mode 100644
index cba2c54a0670..000000000000
--- a/sci-biology/embassy-memenew/files/digest-embassy-memenew-0.1.0
+++ /dev/null
@@ -1,6 +0,0 @@
-MD5 2ef912cfde4903129f2424d23d6da0d2 EMBOSS-4.0.0.tar.gz 17651607
-RMD160 5b29ac2946a1315928581bf0e40a0f6b5023c599 EMBOSS-4.0.0.tar.gz 17651607
-SHA256 bbfd127adc064a5211542f3b5400cbb13c7f74d9171fd16b8531cee9fd11b231 EMBOSS-4.0.0.tar.gz 17651607
-MD5 46b6ca9eeba6c63bd08ebe1b661434dc embassy-4.0.0-memenew-0.1.0.tar.gz 423254
-RMD160 c9aadf1985ff98cca4db6059a4923e4f1b1f3a55 embassy-4.0.0-memenew-0.1.0.tar.gz 423254
-SHA256 c7eb382a80595d6af95f51214c232c4bc6a54c6cc52ff2ea0bc36c26349b6068 embassy-4.0.0-memenew-0.1.0.tar.gz 423254
diff --git a/sci-biology/embassy-mse/Manifest b/sci-biology/embassy-mse/Manifest
index 2469c7948cb4..42372de039af 100644
--- a/sci-biology/embassy-mse/Manifest
+++ b/sci-biology/embassy-mse/Manifest
@@ -1,43 +1,9 @@
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
-
 DIST EMBOSS-4.0.0.tar.gz 17651607 RMD160 5b29ac2946a1315928581bf0e40a0f6b5023c599 SHA1 784c729f2d2e746339a90048277c9e4f052e036a SHA256 bbfd127adc064a5211542f3b5400cbb13c7f74d9171fd16b8531cee9fd11b231
 DIST EMBOSS-5.0.0.tar.gz 20666560 RMD160 1bf510c0919d991e4ba67182137448dee49bab4d SHA1 1ad4edc4808a8225fe8d574e8a7d0686be99cac6 SHA256 64e6f09b82a719ff26de7f21fdf7d2bd605d2c664384c1c7b48f9d245d5f40ae
 DIST embassy-4.0.0-mse-1.0.0.tar.gz 428940 RMD160 9f4d85aed5b27ecb6e6b5f814c46fe5edfc6c66c SHA1 5d29f4054a2985cd28a01d77c925be7368cdbc02 SHA256 9168315bcfb1a658f298891204b8b31f8faa7986e24eb513283c15cf61f8a01a
 DIST embassy-5.0.0-mse-1.0.0.tar.gz 445013 RMD160 70aeb8e27336c8449fa3e73e9d6526428e8f4387 SHA1 df0707d39ef6ff688a11fab62da772073f1d6e7e SHA256 e35560310ece8bb2dec7eeb88e99f39f313bf7366afc445e3b074b687e7f36b2
 EBUILD embassy-mse-1.0.0-r3.ebuild 582 RMD160 c5447ef4d9886fcff90c8a7ba5e9bf7f8f0e8f00 SHA1 2a1edecd376928053658863eeb05cd37fce1a8a1 SHA256 b53ae6dfbf1aef00dfa98174e294e214ffa4b01a4f7c4f0a586429978bde83ca
-MD5 e5350a5bd67bc450ebf8398ae24f3203 embassy-mse-1.0.0-r3.ebuild 582
-RMD160 c5447ef4d9886fcff90c8a7ba5e9bf7f8f0e8f00 embassy-mse-1.0.0-r3.ebuild 582
-SHA256 b53ae6dfbf1aef00dfa98174e294e214ffa4b01a4f7c4f0a586429978bde83ca embassy-mse-1.0.0-r3.ebuild 582
 EBUILD embassy-mse-1.0.0-r4.ebuild 732 RMD160 2e124937b919d51081b56495af60c9ed72c33da1 SHA1 59d205afd3be00ec4c7468e4b7a78895d0b9fd1f SHA256 437c81ca9702e4146d6a630573174da84ec880dfb234419d3e1424723485b5a5
-MD5 31e11dbce23f7875796a0084f1562f62 embassy-mse-1.0.0-r4.ebuild 732
-RMD160 2e124937b919d51081b56495af60c9ed72c33da1 embassy-mse-1.0.0-r4.ebuild 732
-SHA256 437c81ca9702e4146d6a630573174da84ec880dfb234419d3e1424723485b5a5 embassy-mse-1.0.0-r4.ebuild 732
 EBUILD embassy-mse-1.0.0-r5.ebuild 593 RMD160 f030f70d06eb6ce7539b0cd6a38db3bb5db181a3 SHA1 adbf74de5b1c7125a93d6e2f333c3958e1dca10d SHA256 4f40d8c7bcd2f6dc5f3eb33c9d94f421cda202cc550648de5561679bb0436305
-MD5 7061558043bf6e88135e68e7843addae embassy-mse-1.0.0-r5.ebuild 593
-RMD160 f030f70d06eb6ce7539b0cd6a38db3bb5db181a3 embassy-mse-1.0.0-r5.ebuild 593
-SHA256 4f40d8c7bcd2f6dc5f3eb33c9d94f421cda202cc550648de5561679bb0436305 embassy-mse-1.0.0-r5.ebuild 593
 MISC ChangeLog 4151 RMD160 bcb3e832d8f00d2fc1d802435dac4b6c00d924db SHA1 54389b8a1a8729672dd9b7b3d0230aabcfbea901 SHA256 bea02956dc40a2c330034f6889963ad0a560a98f3c86de865f7256b16aefdf6e
-MD5 1ce3269f514d8cfe262a566431757c82 ChangeLog 4151
-RMD160 bcb3e832d8f00d2fc1d802435dac4b6c00d924db ChangeLog 4151
-SHA256 bea02956dc40a2c330034f6889963ad0a560a98f3c86de865f7256b16aefdf6e ChangeLog 4151
 MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
-MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
-RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
-SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
-MD5 333db965293960a1c09d13301dc60ccf files/digest-embassy-mse-1.0.0-r3 515
-RMD160 c6eeff0d6c1f940bfe8f8e78c5b00b29258fa7e6 files/digest-embassy-mse-1.0.0-r3 515
-SHA256 98127a6911bddf00ab10f36de745606179061592e7e90cbb4a19f1bb41e1f386 files/digest-embassy-mse-1.0.0-r3 515
-MD5 333db965293960a1c09d13301dc60ccf files/digest-embassy-mse-1.0.0-r4 515
-RMD160 c6eeff0d6c1f940bfe8f8e78c5b00b29258fa7e6 files/digest-embassy-mse-1.0.0-r4 515
-SHA256 98127a6911bddf00ab10f36de745606179061592e7e90cbb4a19f1bb41e1f386 files/digest-embassy-mse-1.0.0-r4 515
-MD5 e4f4a671fe000c3bf9ffcce059e75792 files/digest-embassy-mse-1.0.0-r5 515
-RMD160 12579b46237a21728ff87b6d463235f5e9bd5989 files/digest-embassy-mse-1.0.0-r5 515
-SHA256 83201d328fb33304017f48c316edcb611b171026931088891f9f8bcac12a02ec files/digest-embassy-mse-1.0.0-r5 515
------BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.5 (GNU/Linux)
-
-iD8DBQFGuVER/ejvha5XGaMRAlQ8AKCFVDWiK8Sdpe8hpdsuPTS3LPpI2QCgih4c
-KIHITMJmPpS9r7ehMonSCSs=
-=S3Qo
------END PGP SIGNATURE-----
diff --git a/sci-biology/embassy-mse/files/digest-embassy-mse-1.0.0-r3 b/sci-biology/embassy-mse/files/digest-embassy-mse-1.0.0-r3
deleted file mode 100644
index de632a1b05dc..000000000000
--- a/sci-biology/embassy-mse/files/digest-embassy-mse-1.0.0-r3
+++ /dev/null
@@ -1,6 +0,0 @@
-MD5 2ef912cfde4903129f2424d23d6da0d2 EMBOSS-4.0.0.tar.gz 17651607
-RMD160 5b29ac2946a1315928581bf0e40a0f6b5023c599 EMBOSS-4.0.0.tar.gz 17651607
-SHA256 bbfd127adc064a5211542f3b5400cbb13c7f74d9171fd16b8531cee9fd11b231 EMBOSS-4.0.0.tar.gz 17651607
-MD5 b5f3f4ed1e74c6cf7a7d57d398a7634b embassy-4.0.0-mse-1.0.0.tar.gz 428940
-RMD160 9f4d85aed5b27ecb6e6b5f814c46fe5edfc6c66c embassy-4.0.0-mse-1.0.0.tar.gz 428940
-SHA256 9168315bcfb1a658f298891204b8b31f8faa7986e24eb513283c15cf61f8a01a embassy-4.0.0-mse-1.0.0.tar.gz 428940
diff --git a/sci-biology/embassy-mse/files/digest-embassy-mse-1.0.0-r4 b/sci-biology/embassy-mse/files/digest-embassy-mse-1.0.0-r4
deleted file mode 100644
index de632a1b05dc..000000000000
--- a/sci-biology/embassy-mse/files/digest-embassy-mse-1.0.0-r4
+++ /dev/null
@@ -1,6 +0,0 @@
-MD5 2ef912cfde4903129f2424d23d6da0d2 EMBOSS-4.0.0.tar.gz 17651607
-RMD160 5b29ac2946a1315928581bf0e40a0f6b5023c599 EMBOSS-4.0.0.tar.gz 17651607
-SHA256 bbfd127adc064a5211542f3b5400cbb13c7f74d9171fd16b8531cee9fd11b231 EMBOSS-4.0.0.tar.gz 17651607
-MD5 b5f3f4ed1e74c6cf7a7d57d398a7634b embassy-4.0.0-mse-1.0.0.tar.gz 428940
-RMD160 9f4d85aed5b27ecb6e6b5f814c46fe5edfc6c66c embassy-4.0.0-mse-1.0.0.tar.gz 428940
-SHA256 9168315bcfb1a658f298891204b8b31f8faa7986e24eb513283c15cf61f8a01a embassy-4.0.0-mse-1.0.0.tar.gz 428940
diff --git a/sci-biology/embassy-mse/files/digest-embassy-mse-1.0.0-r5 b/sci-biology/embassy-mse/files/digest-embassy-mse-1.0.0-r5
deleted file mode 100644
index ff464f973f94..000000000000
--- a/sci-biology/embassy-mse/files/digest-embassy-mse-1.0.0-r5
+++ /dev/null
@@ -1,6 +0,0 @@
-MD5 be4c895220ad34afd65d450ba7d8e34b EMBOSS-5.0.0.tar.gz 20666560
-RMD160 1bf510c0919d991e4ba67182137448dee49bab4d EMBOSS-5.0.0.tar.gz 20666560
-SHA256 64e6f09b82a719ff26de7f21fdf7d2bd605d2c664384c1c7b48f9d245d5f40ae EMBOSS-5.0.0.tar.gz 20666560
-MD5 3978a06e3651104f622a5834523c45de embassy-5.0.0-mse-1.0.0.tar.gz 445013
-RMD160 70aeb8e27336c8449fa3e73e9d6526428e8f4387 embassy-5.0.0-mse-1.0.0.tar.gz 445013
-SHA256 e35560310ece8bb2dec7eeb88e99f39f313bf7366afc445e3b074b687e7f36b2 embassy-5.0.0-mse-1.0.0.tar.gz 445013
diff --git a/sci-biology/embassy-phylip/Manifest b/sci-biology/embassy-phylip/Manifest
index 5abb57a637b7..d3cbd19d77d8 100644
--- a/sci-biology/embassy-phylip/Manifest
+++ b/sci-biology/embassy-phylip/Manifest
@@ -1,17 +1,5 @@
 DIST EMBOSS-5.0.0.tar.gz 20666560 RMD160 1bf510c0919d991e4ba67182137448dee49bab4d SHA1 1ad4edc4808a8225fe8d574e8a7d0686be99cac6 SHA256 64e6f09b82a719ff26de7f21fdf7d2bd605d2c664384c1c7b48f9d245d5f40ae
 DIST embassy-5.0.0-phylip-3.6b.tar.gz 1594433 RMD160 84275c400713b86e0a8bffe187025a6ac569a41b SHA1 09486bed7bac5e7fadd4aeefb573ccd29270dae2 SHA256 c2397937f4b827844192a33b31f13271a3560c81045543d912a9c28eb6ad894f
 EBUILD embassy-phylip-3.6b.ebuild 522 RMD160 862ee9ef6874d11e1ae6555c0463008b451c839e SHA1 44da1bd58586963b298bfba0636b24ec37a47b18 SHA256 f86d4e2967d1d811a33fd59c4333e1b794107c98f17e1085946f0671bcd76105
-MD5 d9ce806e098bd76ad1b4e9bc35c8b2f6 embassy-phylip-3.6b.ebuild 522
-RMD160 862ee9ef6874d11e1ae6555c0463008b451c839e embassy-phylip-3.6b.ebuild 522
-SHA256 f86d4e2967d1d811a33fd59c4333e1b794107c98f17e1085946f0671bcd76105 embassy-phylip-3.6b.ebuild 522
 MISC ChangeLog 443 RMD160 b80ce313526c55add1abab33579d2d66d439455c SHA1 44d3812f117c1b9bf2065ca0d4e66aea11f6e423 SHA256 25c10bc004331e85f1c4d6d386a647f6703d4039dd29bf8e184df0b7a0057a98
-MD5 64b38746f681a3c2b74fd5def20b75bc ChangeLog 443
-RMD160 b80ce313526c55add1abab33579d2d66d439455c ChangeLog 443
-SHA256 25c10bc004331e85f1c4d6d386a647f6703d4039dd29bf8e184df0b7a0057a98 ChangeLog 443
 MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
-MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
-RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
-SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
-MD5 bc5651f92d4536c11fe306dd888cb51f files/digest-embassy-phylip-3.6b 524
-RMD160 ba7abf7a63ea4fd7dc74c2839bed50a9bca7c490 files/digest-embassy-phylip-3.6b 524
-SHA256 a2b1d9834eb243746e8ec3bf6305051f4a317cb6c35697dd40d4e8e58653b18f files/digest-embassy-phylip-3.6b 524
diff --git a/sci-biology/embassy-phylip/files/digest-embassy-phylip-3.6b b/sci-biology/embassy-phylip/files/digest-embassy-phylip-3.6b
deleted file mode 100644
index 70a6e27369db..000000000000
--- a/sci-biology/embassy-phylip/files/digest-embassy-phylip-3.6b
+++ /dev/null
@@ -1,6 +0,0 @@
-MD5 be4c895220ad34afd65d450ba7d8e34b EMBOSS-5.0.0.tar.gz 20666560
-RMD160 1bf510c0919d991e4ba67182137448dee49bab4d EMBOSS-5.0.0.tar.gz 20666560
-SHA256 64e6f09b82a719ff26de7f21fdf7d2bd605d2c664384c1c7b48f9d245d5f40ae EMBOSS-5.0.0.tar.gz 20666560
-MD5 760a90bea49872aba95fd7dd2b67570c embassy-5.0.0-phylip-3.6b.tar.gz 1594433
-RMD160 84275c400713b86e0a8bffe187025a6ac569a41b embassy-5.0.0-phylip-3.6b.tar.gz 1594433
-SHA256 c2397937f4b827844192a33b31f13271a3560c81045543d912a9c28eb6ad894f embassy-5.0.0-phylip-3.6b.tar.gz 1594433
diff --git a/sci-biology/embassy-phylipnew/Manifest b/sci-biology/embassy-phylipnew/Manifest
index 3e71dc3534c9..689591547160 100644
--- a/sci-biology/embassy-phylipnew/Manifest
+++ b/sci-biology/embassy-phylipnew/Manifest
@@ -1,17 +1,5 @@
 DIST EMBOSS-4.0.0.tar.gz 17651607 RMD160 5b29ac2946a1315928581bf0e40a0f6b5023c599 SHA1 784c729f2d2e746339a90048277c9e4f052e036a SHA256 bbfd127adc064a5211542f3b5400cbb13c7f74d9171fd16b8531cee9fd11b231
 DIST embassy-4.0.0-phylipnew-3.6b.tar.gz 1532866 RMD160 298c286c31e3b1e11b81d39e983c779b841e2256 SHA1 d7e9c3a1229797d2c18e3e2d075fbbb8dc87a559 SHA256 eebecbd93a85e91f7d3f8e02c24db0a123cf89e9da88983fd6d0ca41547b3fc7
 EBUILD embassy-phylipnew-3.6b.ebuild 524 RMD160 2416ecfcb402511fb32f97eab58a8c4d454bd33d SHA1 06e3a9aad23c404790db676b029f4eb95d785cbf SHA256 2d457c104c3602f08480fab9b2b897bd4652e4ae999b07316272ee912e5b741f
-MD5 28148882e75ea999abcec292965b6111 embassy-phylipnew-3.6b.ebuild 524
-RMD160 2416ecfcb402511fb32f97eab58a8c4d454bd33d embassy-phylipnew-3.6b.ebuild 524
-SHA256 2d457c104c3602f08480fab9b2b897bd4652e4ae999b07316272ee912e5b741f embassy-phylipnew-3.6b.ebuild 524
 MISC ChangeLog 997 RMD160 bb37a536ffa8c90d0e59fa2edf602f047e179212 SHA1 fa14c6db9bdc79fadc09118e42d8a5cff47c7611 SHA256 338fe76be06b8d26c522983c239411cc20503476fd798d74e03d589a39eda32e
-MD5 4568d8d649dec9e9404bf6798590ea93 ChangeLog 997
-RMD160 bb37a536ffa8c90d0e59fa2edf602f047e179212 ChangeLog 997
-SHA256 338fe76be06b8d26c522983c239411cc20503476fd798d74e03d589a39eda32e ChangeLog 997
 MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
-MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
-RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
-SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
-MD5 089b4b5154726d00ea0632243dbc56fb files/digest-embassy-phylipnew-3.6b 533
-RMD160 d350068b0c1e8f02046eb4faeb06ef61231befc5 files/digest-embassy-phylipnew-3.6b 533
-SHA256 02cff46fd7c729464e335061e71b8a9e97643811ba88a57b416e9c10873deb75 files/digest-embassy-phylipnew-3.6b 533
diff --git a/sci-biology/embassy-phylipnew/files/digest-embassy-phylipnew-3.6b b/sci-biology/embassy-phylipnew/files/digest-embassy-phylipnew-3.6b
deleted file mode 100644
index 445ad9439dae..000000000000
--- a/sci-biology/embassy-phylipnew/files/digest-embassy-phylipnew-3.6b
+++ /dev/null
@@ -1,6 +0,0 @@
-MD5 2ef912cfde4903129f2424d23d6da0d2 EMBOSS-4.0.0.tar.gz 17651607
-RMD160 5b29ac2946a1315928581bf0e40a0f6b5023c599 EMBOSS-4.0.0.tar.gz 17651607
-SHA256 bbfd127adc064a5211542f3b5400cbb13c7f74d9171fd16b8531cee9fd11b231 EMBOSS-4.0.0.tar.gz 17651607
-MD5 3a12ee43c48562092f4f2add0e8f2978 embassy-4.0.0-phylipnew-3.6b.tar.gz 1532866
-RMD160 298c286c31e3b1e11b81d39e983c779b841e2256 embassy-4.0.0-phylipnew-3.6b.tar.gz 1532866
-SHA256 eebecbd93a85e91f7d3f8e02c24db0a123cf89e9da88983fd6d0ca41547b3fc7 embassy-4.0.0-phylipnew-3.6b.tar.gz 1532866
diff --git a/sci-biology/embassy-signature/Manifest b/sci-biology/embassy-signature/Manifest
index f3a5cc9c40c1..d479ee2e2ebe 100644
--- a/sci-biology/embassy-signature/Manifest
+++ b/sci-biology/embassy-signature/Manifest
@@ -3,24 +3,6 @@ DIST EMBOSS-5.0.0.tar.gz 20666560 RMD160 1bf510c0919d991e4ba67182137448dee49bab4
 DIST embassy-4.0.0-signature-0.1.0.tar.gz 549405 RMD160 6b7c345c93554f2a0f94a781b7ed7a660e9bc784 SHA1 f319d9a1589d73f497af967fff74ce3dae80e475 SHA256 f7d05c645a6501ccf1ab59343db2f2ee147d2eb3ab7636ae38e09c59c07989b4
 DIST embassy-5.0.0-signature-0.1.0.tar.gz 573992 RMD160 cec1e7332b158bde4ba2fd8a616fe41383628e03 SHA1 cc7b0bfd590008d0841be312229dfbfdd7607157 SHA256 9b0529befdbe5d56b3370cfffe0a4b4cc523f350b50ddd4a61dd24776a1770e8
 EBUILD embassy-signature-0.1.0-r1.ebuild 492 RMD160 246ffd0e9a7a98c13ab27db4451f691b59fc895c SHA1 57d9c0c9789f40791f9d75a273c374568140c2d5 SHA256 7ac9b126f6945f238bd65fc87182dffa5ba48a0e4b1ced9e21be50deb990637a
-MD5 c24ceb17c2090dd74b716f07b96efa80 embassy-signature-0.1.0-r1.ebuild 492
-RMD160 246ffd0e9a7a98c13ab27db4451f691b59fc895c embassy-signature-0.1.0-r1.ebuild 492
-SHA256 7ac9b126f6945f238bd65fc87182dffa5ba48a0e4b1ced9e21be50deb990637a embassy-signature-0.1.0-r1.ebuild 492
 EBUILD embassy-signature-0.1.0-r2.ebuild 496 RMD160 0a282e2fb30846d84b1533974dcf031f28e1afed SHA1 f75865ae5b07791f7943322e8cc9d73a8fc8f976 SHA256 4218b714130ca92789b7a3fc53e92a6319d537bbf29b1c836b2897d1d7e8b6a5
-MD5 55a13781c57e326d707ab95d061eb4e5 embassy-signature-0.1.0-r2.ebuild 496
-RMD160 0a282e2fb30846d84b1533974dcf031f28e1afed embassy-signature-0.1.0-r2.ebuild 496
-SHA256 4218b714130ca92789b7a3fc53e92a6319d537bbf29b1c836b2897d1d7e8b6a5 embassy-signature-0.1.0-r2.ebuild 496
 MISC ChangeLog 2008 RMD160 1b5f10e7dee38e4130129bbccc85f97e3e25bfe5 SHA1 5c84f066da93eb186df0a75bac3ec5642c38dc30 SHA256 7c6562057a5247c45b6773e5220554f29959fd2da8b317a82446ec58ad73b24a
-MD5 f9e799b99aa8e5145deab75cae0e941c ChangeLog 2008
-RMD160 1b5f10e7dee38e4130129bbccc85f97e3e25bfe5 ChangeLog 2008
-SHA256 7c6562057a5247c45b6773e5220554f29959fd2da8b317a82446ec58ad73b24a ChangeLog 2008
 MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
-MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
-RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
-SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
-MD5 4aa3b4a01cf03fd5e47aaa751b49ccaa files/digest-embassy-signature-0.1.0-r1 533
-RMD160 1db2ea612949a953da38ce1a34c8991f19d77ab7 files/digest-embassy-signature-0.1.0-r1 533
-SHA256 dd2f5bf3ce922a7af21a8d0fbcd11a978c5c496157d34d7e0e31f958dd7da75a files/digest-embassy-signature-0.1.0-r1 533
-MD5 a85e5b5f5a2f227dbde191862fe5e181 files/digest-embassy-signature-0.1.0-r2 533
-RMD160 232f56d8e92b0df9fef57563ec548a9e9362f88c files/digest-embassy-signature-0.1.0-r2 533
-SHA256 32b87b3cb550af833a375280e4b70bf63779b9ce20a9e03e387b2f3e9240fce2 files/digest-embassy-signature-0.1.0-r2 533
diff --git a/sci-biology/embassy-signature/files/digest-embassy-signature-0.1.0-r1 b/sci-biology/embassy-signature/files/digest-embassy-signature-0.1.0-r1
deleted file mode 100644
index 762b641e8dfd..000000000000
--- a/sci-biology/embassy-signature/files/digest-embassy-signature-0.1.0-r1
+++ /dev/null
@@ -1,6 +0,0 @@
-MD5 2ef912cfde4903129f2424d23d6da0d2 EMBOSS-4.0.0.tar.gz 17651607
-RMD160 5b29ac2946a1315928581bf0e40a0f6b5023c599 EMBOSS-4.0.0.tar.gz 17651607
-SHA256 bbfd127adc064a5211542f3b5400cbb13c7f74d9171fd16b8531cee9fd11b231 EMBOSS-4.0.0.tar.gz 17651607
-MD5 64eae2537e7c887f5af2275ac3f1d2fa embassy-4.0.0-signature-0.1.0.tar.gz 549405
-RMD160 6b7c345c93554f2a0f94a781b7ed7a660e9bc784 embassy-4.0.0-signature-0.1.0.tar.gz 549405
-SHA256 f7d05c645a6501ccf1ab59343db2f2ee147d2eb3ab7636ae38e09c59c07989b4 embassy-4.0.0-signature-0.1.0.tar.gz 549405
diff --git a/sci-biology/embassy-signature/files/digest-embassy-signature-0.1.0-r2 b/sci-biology/embassy-signature/files/digest-embassy-signature-0.1.0-r2
deleted file mode 100644
index 1df3fdfc3b10..000000000000
--- a/sci-biology/embassy-signature/files/digest-embassy-signature-0.1.0-r2
+++ /dev/null
@@ -1,6 +0,0 @@
-MD5 be4c895220ad34afd65d450ba7d8e34b EMBOSS-5.0.0.tar.gz 20666560
-RMD160 1bf510c0919d991e4ba67182137448dee49bab4d EMBOSS-5.0.0.tar.gz 20666560
-SHA256 64e6f09b82a719ff26de7f21fdf7d2bd605d2c664384c1c7b48f9d245d5f40ae EMBOSS-5.0.0.tar.gz 20666560
-MD5 26deae308cc5aac3dee5dd03df2ae9e8 embassy-5.0.0-signature-0.1.0.tar.gz 573992
-RMD160 cec1e7332b158bde4ba2fd8a616fe41383628e03 embassy-5.0.0-signature-0.1.0.tar.gz 573992
-SHA256 9b0529befdbe5d56b3370cfffe0a4b4cc523f350b50ddd4a61dd24776a1770e8 embassy-5.0.0-signature-0.1.0.tar.gz 573992
diff --git a/sci-biology/embassy-structure/Manifest b/sci-biology/embassy-structure/Manifest
index f37ea8b86931..30a1863fbe86 100644
--- a/sci-biology/embassy-structure/Manifest
+++ b/sci-biology/embassy-structure/Manifest
@@ -3,24 +3,6 @@ DIST EMBOSS-5.0.0.tar.gz 20666560 RMD160 1bf510c0919d991e4ba67182137448dee49bab4
 DIST embassy-4.0.0-structure-0.1.0.tar.gz 514336 RMD160 709e37e26ddb61f2fa9001766a4176baef4f62b6 SHA1 a00549bb3c2b786a23500d8a9b8e743737c586c2 SHA256 54a1352ab3fca5ea8e451c2409bdf2ccd31f2b65e9fff566199542ac1455f858
 DIST embassy-5.0.0-structure-0.1.0.tar.gz 530874 RMD160 eb2301ede2133b59d0ed61698c727ce7a2f72c14 SHA1 17a3eb7dc9cc74e5da02873dc8932f488ac2c004 SHA256 3ed8ea5373232cd80302ff3b8727838b4de2f6b39aa263ab9530bbbe71d730c1
 EBUILD embassy-structure-0.1.0-r1.ebuild 492 RMD160 6972e6117b23ba4cc0a05640bb69fa2923274cc3 SHA1 f5aba4304d972e0319da7259e6b8ac704dba95d5 SHA256 5098e059f7d6170c0a50253e6f06b2a5c76cf9e65fd01ec693f83b7aea2c62e8
-MD5 5b0403f9064624340c16084488829856 embassy-structure-0.1.0-r1.ebuild 492
-RMD160 6972e6117b23ba4cc0a05640bb69fa2923274cc3 embassy-structure-0.1.0-r1.ebuild 492
-SHA256 5098e059f7d6170c0a50253e6f06b2a5c76cf9e65fd01ec693f83b7aea2c62e8 embassy-structure-0.1.0-r1.ebuild 492
 EBUILD embassy-structure-0.1.0-r2.ebuild 496 RMD160 7d7bb44c2bf5760976b806c2fa8f01e012ba5c51 SHA1 253a4284d788b1ec3b0331a60ad5d34a36256c7c SHA256 f3f9070f7c7dcc194bdd98898da76108a69170b8e79fe537045605945a9e3d5f
-MD5 416189fd7b333ad2e83ce2cec4dd5700 embassy-structure-0.1.0-r2.ebuild 496
-RMD160 7d7bb44c2bf5760976b806c2fa8f01e012ba5c51 embassy-structure-0.1.0-r2.ebuild 496
-SHA256 f3f9070f7c7dcc194bdd98898da76108a69170b8e79fe537045605945a9e3d5f embassy-structure-0.1.0-r2.ebuild 496
 MISC ChangeLog 2008 RMD160 c7393e5d9a5299fea6cff9e96307e520b79f7292 SHA1 e499b1e42a84554addccf67ba9df5ddf81177498 SHA256 eceb7c2cacd768dd9bd0cb99180f26cc53de476d58c0e6610da005812e3b2395
-MD5 a723244d9f4912989a22f61dac78dba3 ChangeLog 2008
-RMD160 c7393e5d9a5299fea6cff9e96307e520b79f7292 ChangeLog 2008
-SHA256 eceb7c2cacd768dd9bd0cb99180f26cc53de476d58c0e6610da005812e3b2395 ChangeLog 2008
 MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
-MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
-RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
-SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
-MD5 2f1ceb6a8bd731aabc4a573dc9ac5639 files/digest-embassy-structure-0.1.0-r1 533
-RMD160 5e65ccd4f675fec16d4f9eee1c9973db968d8660 files/digest-embassy-structure-0.1.0-r1 533
-SHA256 a8a08bb25811a93e7def697ebd1bc878fc9ad167d4051ba2c365aacf85695ed3 files/digest-embassy-structure-0.1.0-r1 533
-MD5 5ba327cc3f2f1da545005b58c9158b2a files/digest-embassy-structure-0.1.0-r2 533
-RMD160 efe69b8dee4f7fae481180c46925651c9d072ae3 files/digest-embassy-structure-0.1.0-r2 533
-SHA256 e827154ae610c692bd265695ee6cd4c84284224f71e66ac6c57c9ddfbbaeefbc files/digest-embassy-structure-0.1.0-r2 533
diff --git a/sci-biology/embassy-structure/files/digest-embassy-structure-0.1.0-r1 b/sci-biology/embassy-structure/files/digest-embassy-structure-0.1.0-r1
deleted file mode 100644
index 6292d17feee6..000000000000
--- a/sci-biology/embassy-structure/files/digest-embassy-structure-0.1.0-r1
+++ /dev/null
@@ -1,6 +0,0 @@
-MD5 2ef912cfde4903129f2424d23d6da0d2 EMBOSS-4.0.0.tar.gz 17651607
-RMD160 5b29ac2946a1315928581bf0e40a0f6b5023c599 EMBOSS-4.0.0.tar.gz 17651607
-SHA256 bbfd127adc064a5211542f3b5400cbb13c7f74d9171fd16b8531cee9fd11b231 EMBOSS-4.0.0.tar.gz 17651607
-MD5 93e7bb7fbd53d8aa2e1ab0d1af4f44c4 embassy-4.0.0-structure-0.1.0.tar.gz 514336
-RMD160 709e37e26ddb61f2fa9001766a4176baef4f62b6 embassy-4.0.0-structure-0.1.0.tar.gz 514336
-SHA256 54a1352ab3fca5ea8e451c2409bdf2ccd31f2b65e9fff566199542ac1455f858 embassy-4.0.0-structure-0.1.0.tar.gz 514336
diff --git a/sci-biology/embassy-structure/files/digest-embassy-structure-0.1.0-r2 b/sci-biology/embassy-structure/files/digest-embassy-structure-0.1.0-r2
deleted file mode 100644
index c2dc86ae7e36..000000000000
--- a/sci-biology/embassy-structure/files/digest-embassy-structure-0.1.0-r2
+++ /dev/null
@@ -1,6 +0,0 @@
-MD5 be4c895220ad34afd65d450ba7d8e34b EMBOSS-5.0.0.tar.gz 20666560
-RMD160 1bf510c0919d991e4ba67182137448dee49bab4d EMBOSS-5.0.0.tar.gz 20666560
-SHA256 64e6f09b82a719ff26de7f21fdf7d2bd605d2c664384c1c7b48f9d245d5f40ae EMBOSS-5.0.0.tar.gz 20666560
-MD5 6736b4741b15d4cba488a5422fcfaee1 embassy-5.0.0-structure-0.1.0.tar.gz 530874
-RMD160 eb2301ede2133b59d0ed61698c727ce7a2f72c14 embassy-5.0.0-structure-0.1.0.tar.gz 530874
-SHA256 3ed8ea5373232cd80302ff3b8727838b4de2f6b39aa263ab9530bbbe71d730c1 embassy-5.0.0-structure-0.1.0.tar.gz 530874
diff --git a/sci-biology/embassy-topo/Manifest b/sci-biology/embassy-topo/Manifest
index 5df0cc170317..278e81092cf9 100644
--- a/sci-biology/embassy-topo/Manifest
+++ b/sci-biology/embassy-topo/Manifest
@@ -3,24 +3,6 @@ DIST EMBOSS-5.0.0.tar.gz 20666560 RMD160 1bf510c0919d991e4ba67182137448dee49bab4
 DIST embassy-4.0.0-topo-1.0.0.tar.gz 367882 RMD160 0cefa2eabf3bebedd97b747909036feb98f17ce9 SHA1 c4f8c12ad1b3264b880aaa180ad8453d21dbc519 SHA256 bd1e6833f00ff6d09b5841824d7372f1ecd8a6175c5c76bd65ee727d0a7c4523
 DIST embassy-5.0.0-topo-1.0.0.tar.gz 379381 RMD160 4dc947ee33b0f5312e73634ad43888e9ac57aede SHA1 f1602b86ad1771063c39578290f37618b184f1f2 SHA256 ed1921e92d1bbd9fcc16ab36f2fcbafca9e60cc0d4b4fd1da77660ffd3e7b2f2
 EBUILD embassy-topo-1.0.0-r3.ebuild 504 RMD160 763c69b24ab89168b11a8fa9be45b435946a33b2 SHA1 76f3776e1b583a0839af32114774cc27228ec52b SHA256 bf44cfa6138bddf8864f8bd633f1f3d75ff333c8cfb09bd8a40984402f536861
-MD5 a9e30785940ceb64682efbbdf966a09d embassy-topo-1.0.0-r3.ebuild 504
-RMD160 763c69b24ab89168b11a8fa9be45b435946a33b2 embassy-topo-1.0.0-r3.ebuild 504
-SHA256 bf44cfa6138bddf8864f8bd633f1f3d75ff333c8cfb09bd8a40984402f536861 embassy-topo-1.0.0-r3.ebuild 504
 EBUILD embassy-topo-1.0.0-r4.ebuild 508 RMD160 d16070df83e7d30900a4d255b08bde3da85befd9 SHA1 b826bc9f3a0d15ddcae1559070b7af6e4e3f8f71 SHA256 386904ccda68a2d066738fbc461b8b237ac04f81de0a6dc0c304b1e48a70b6c5
-MD5 8989fe94c708c68dd7d432825874be85 embassy-topo-1.0.0-r4.ebuild 508
-RMD160 d16070df83e7d30900a4d255b08bde3da85befd9 embassy-topo-1.0.0-r4.ebuild 508
-SHA256 386904ccda68a2d066738fbc461b8b237ac04f81de0a6dc0c304b1e48a70b6c5 embassy-topo-1.0.0-r4.ebuild 508
 MISC ChangeLog 3422 RMD160 69f336f546429b1f6f0948b50374e0b507a1ea87 SHA1 149da1d1a8e78252073541605c4265a8eb1b72fe SHA256 45cf3a1bb1e8d0243c2cf86c32a42333df58b137c7d04f6479b68f19631c33db
-MD5 edb2df98bc716e55c2ef559b786f052e ChangeLog 3422
-RMD160 69f336f546429b1f6f0948b50374e0b507a1ea87 ChangeLog 3422
-SHA256 45cf3a1bb1e8d0243c2cf86c32a42333df58b137c7d04f6479b68f19631c33db ChangeLog 3422
 MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
-MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
-RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
-SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
-MD5 925ae2917976f619b25cbfee44c06aa4 files/digest-embassy-topo-1.0.0-r3 518
-RMD160 5e3434ce1f9eae25e11706a084a0bbce24fe9cef files/digest-embassy-topo-1.0.0-r3 518
-SHA256 cf1e9f29d528761de66a370b32acac99cef79918cdf91eb59a12675198136b9c files/digest-embassy-topo-1.0.0-r3 518
-MD5 a11895fb523156cabd24acbe53aa7816 files/digest-embassy-topo-1.0.0-r4 518
-RMD160 245f95cabea695795d2def47555d2efa41493795 files/digest-embassy-topo-1.0.0-r4 518
-SHA256 8662bfa5e6cde63b197a15df51f9eacc14d226dbf4b6f9eba5095f50b512eb38 files/digest-embassy-topo-1.0.0-r4 518
diff --git a/sci-biology/embassy-topo/files/digest-embassy-topo-1.0.0-r3 b/sci-biology/embassy-topo/files/digest-embassy-topo-1.0.0-r3
deleted file mode 100644
index 639cffd10f68..000000000000
--- a/sci-biology/embassy-topo/files/digest-embassy-topo-1.0.0-r3
+++ /dev/null
@@ -1,6 +0,0 @@
-MD5 2ef912cfde4903129f2424d23d6da0d2 EMBOSS-4.0.0.tar.gz 17651607
-RMD160 5b29ac2946a1315928581bf0e40a0f6b5023c599 EMBOSS-4.0.0.tar.gz 17651607
-SHA256 bbfd127adc064a5211542f3b5400cbb13c7f74d9171fd16b8531cee9fd11b231 EMBOSS-4.0.0.tar.gz 17651607
-MD5 538c5205fc65ff3b0f3b83dde466200f embassy-4.0.0-topo-1.0.0.tar.gz 367882
-RMD160 0cefa2eabf3bebedd97b747909036feb98f17ce9 embassy-4.0.0-topo-1.0.0.tar.gz 367882
-SHA256 bd1e6833f00ff6d09b5841824d7372f1ecd8a6175c5c76bd65ee727d0a7c4523 embassy-4.0.0-topo-1.0.0.tar.gz 367882
diff --git a/sci-biology/embassy-topo/files/digest-embassy-topo-1.0.0-r4 b/sci-biology/embassy-topo/files/digest-embassy-topo-1.0.0-r4
deleted file mode 100644
index 96fc3ee886fe..000000000000
--- a/sci-biology/embassy-topo/files/digest-embassy-topo-1.0.0-r4
+++ /dev/null
@@ -1,6 +0,0 @@
-MD5 be4c895220ad34afd65d450ba7d8e34b EMBOSS-5.0.0.tar.gz 20666560
-RMD160 1bf510c0919d991e4ba67182137448dee49bab4d EMBOSS-5.0.0.tar.gz 20666560
-SHA256 64e6f09b82a719ff26de7f21fdf7d2bd605d2c664384c1c7b48f9d245d5f40ae EMBOSS-5.0.0.tar.gz 20666560
-MD5 d45602a1b1f22da50a775c41df5fe672 embassy-5.0.0-topo-1.0.0.tar.gz 379381
-RMD160 4dc947ee33b0f5312e73634ad43888e9ac57aede embassy-5.0.0-topo-1.0.0.tar.gz 379381
-SHA256 ed1921e92d1bbd9fcc16ab36f2fcbafca9e60cc0d4b4fd1da77660ffd3e7b2f2 embassy-5.0.0-topo-1.0.0.tar.gz 379381
diff --git a/sci-biology/embassy-vienna/Manifest b/sci-biology/embassy-vienna/Manifest
index 8fec5b6e8998..8589a9163b7b 100644
--- a/sci-biology/embassy-vienna/Manifest
+++ b/sci-biology/embassy-vienna/Manifest
@@ -1,17 +1,5 @@
 DIST EMBOSS-5.0.0.tar.gz 20666560 RMD160 1bf510c0919d991e4ba67182137448dee49bab4d SHA1 1ad4edc4808a8225fe8d574e8a7d0686be99cac6 SHA256 64e6f09b82a719ff26de7f21fdf7d2bd605d2c664384c1c7b48f9d245d5f40ae
 DIST embassy-5.0.0-vienna-1.6.tar.gz 635638 RMD160 07e87ae645d54eedf401ecaaa78bd9fed1845047 SHA1 2fd8bb1cb27235651fc7a41aacd97db287781f99 SHA256 04c4a57486e23c2cc8ef396d9012c396519b2ab1b13b2500199e6457a34cfa58
 EBUILD embassy-vienna-1.6.ebuild 479 RMD160 8180b47b69b09694e02b2e5e5ff9960528e0b7f5 SHA1 bc4477b48109bdc4ab1bd8b19b13317e33522170 SHA256 13926feb9c479d0cfd4713154f5027bfa36e49f81550ce0dcf464cabc2626fd8
-MD5 e354ff0137fe1e3e798144a342078c32 embassy-vienna-1.6.ebuild 479
-RMD160 8180b47b69b09694e02b2e5e5ff9960528e0b7f5 embassy-vienna-1.6.ebuild 479
-SHA256 13926feb9c479d0cfd4713154f5027bfa36e49f81550ce0dcf464cabc2626fd8 embassy-vienna-1.6.ebuild 479
 MISC ChangeLog 364 RMD160 9b7ecbb28e7ab9d426e34cac57777d76f7fcbf36 SHA1 7331fc85d22515e3a1efef1e40b963df978d111c SHA256 742de8c6f8b18e31059809de4a8f8746af16099f97e105f2fb7c31be789cb987
-MD5 785414a3c6fc55b58c105724203e334f ChangeLog 364
-RMD160 9b7ecbb28e7ab9d426e34cac57777d76f7fcbf36 ChangeLog 364
-SHA256 742de8c6f8b18e31059809de4a8f8746af16099f97e105f2fb7c31be789cb987 ChangeLog 364
 MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
-MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
-RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
-SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
-MD5 6d077c51c78ba9ba1f2371719ce3a21d files/digest-embassy-vienna-1.6 518
-RMD160 88171e69158bf38407016ebaa97a306b84e6a17f files/digest-embassy-vienna-1.6 518
-SHA256 f965d05aba37e46d85c28579f83967bf8c22caa035c118125a37b12cb629adec files/digest-embassy-vienna-1.6 518
diff --git a/sci-biology/embassy-vienna/files/digest-embassy-vienna-1.6 b/sci-biology/embassy-vienna/files/digest-embassy-vienna-1.6
deleted file mode 100644
index b132e2d9f10c..000000000000
--- a/sci-biology/embassy-vienna/files/digest-embassy-vienna-1.6
+++ /dev/null
@@ -1,6 +0,0 @@
-MD5 be4c895220ad34afd65d450ba7d8e34b EMBOSS-5.0.0.tar.gz 20666560
-RMD160 1bf510c0919d991e4ba67182137448dee49bab4d EMBOSS-5.0.0.tar.gz 20666560
-SHA256 64e6f09b82a719ff26de7f21fdf7d2bd605d2c664384c1c7b48f9d245d5f40ae EMBOSS-5.0.0.tar.gz 20666560
-MD5 282ed7ac9c1741160fcb1e8d48539311 embassy-5.0.0-vienna-1.6.tar.gz 635638
-RMD160 07e87ae645d54eedf401ecaaa78bd9fed1845047 embassy-5.0.0-vienna-1.6.tar.gz 635638
-SHA256 04c4a57486e23c2cc8ef396d9012c396519b2ab1b13b2500199e6457a34cfa58 embassy-5.0.0-vienna-1.6.tar.gz 635638
diff --git a/sci-biology/embassy/Manifest b/sci-biology/embassy/Manifest
index 73e118cab63f..372a582c7269 100644
--- a/sci-biology/embassy/Manifest
+++ b/sci-biology/embassy/Manifest
@@ -1,22 +1,4 @@
 EBUILD embassy-4.0.0.ebuild 1459 RMD160 2c19d126ef75a04282ad8ec22a541ddaf36310e2 SHA1 eeccace19ccde924b6253648dee70b2354bb656c SHA256 69851568a714d9ce2092b0d25ad404e33fd40992c89d5f18252fc35ad2a13dc3
-MD5 2d2e08794489ff775f5b1d4a0db7179e embassy-4.0.0.ebuild 1459
-RMD160 2c19d126ef75a04282ad8ec22a541ddaf36310e2 embassy-4.0.0.ebuild 1459
-SHA256 69851568a714d9ce2092b0d25ad404e33fd40992c89d5f18252fc35ad2a13dc3 embassy-4.0.0.ebuild 1459
 EBUILD embassy-5.0.0.ebuild 1043 RMD160 0ae0c808021ebe514cc5acca266285f5e6b8954e SHA1 688dd9120823267bef2b761d47c15bf42216dbc2 SHA256 5b6a64407ef37b3051a5be2b00cd2020248717cf4cfb2d8752d23d888d514a1b
-MD5 960158e3016e4d4308b2def88fd2c87a embassy-5.0.0.ebuild 1043
-RMD160 0ae0c808021ebe514cc5acca266285f5e6b8954e embassy-5.0.0.ebuild 1043
-SHA256 5b6a64407ef37b3051a5be2b00cd2020248717cf4cfb2d8752d23d888d514a1b embassy-5.0.0.ebuild 1043
 MISC ChangeLog 3659 RMD160 516a07c3a847338908663cbe93b14cd1cddf62f9 SHA1 55b3ce6c7b9ebc4421d2d657f8d72aaa33af3250 SHA256 ddf5c57ce40f5213efd37ec425e2f5bc667251e1586ac7d940d585510fadde49
-MD5 edfbfb12c3bee2a9e568b3e439c145b7 ChangeLog 3659
-RMD160 516a07c3a847338908663cbe93b14cd1cddf62f9 ChangeLog 3659
-SHA256 ddf5c57ce40f5213efd37ec425e2f5bc667251e1586ac7d940d585510fadde49 ChangeLog 3659
 MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
-MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
-RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
-SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
-MD5 d41d8cd98f00b204e9800998ecf8427e files/digest-embassy-4.0.0 0
-RMD160 9c1185a5c5e9fc54612808977ee8f548b2258d31 files/digest-embassy-4.0.0 0
-SHA256 e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855 files/digest-embassy-4.0.0 0
-MD5 d41d8cd98f00b204e9800998ecf8427e files/digest-embassy-5.0.0 0
-RMD160 9c1185a5c5e9fc54612808977ee8f548b2258d31 files/digest-embassy-5.0.0 0
-SHA256 e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855 files/digest-embassy-5.0.0 0
diff --git a/sci-biology/embassy/files/digest-embassy-4.0.0 b/sci-biology/embassy/files/digest-embassy-4.0.0
deleted file mode 100644
index e69de29bb2d1..000000000000
--- a/sci-biology/embassy/files/digest-embassy-4.0.0
+++ /dev/null
diff --git a/sci-biology/embassy/files/digest-embassy-5.0.0 b/sci-biology/embassy/files/digest-embassy-5.0.0
deleted file mode 100644
index e69de29bb2d1..000000000000
--- a/sci-biology/embassy/files/digest-embassy-5.0.0
+++ /dev/null
diff --git a/sci-biology/emboss/Manifest b/sci-biology/emboss/Manifest
index 1440566df274..6e2c3b36bcd0 100644
--- a/sci-biology/emboss/Manifest
+++ b/sci-biology/emboss/Manifest
@@ -1,40 +1,10 @@
 AUX 22emboss 110 RMD160 aa416dbfca66cc7822ed162122addadde2756c66 SHA1 c77b477bfdf0e77de4f29794e4fb2e7592557e48 SHA256 cf3bd3b8d2638a0cd14e57839033d63c855114a0e12883bbc7a5106b0cfc01ad
-MD5 ef2dfa3d13837026f59c0cf5f04f67c5 files/22emboss 110
-RMD160 aa416dbfca66cc7822ed162122addadde2756c66 files/22emboss 110
-SHA256 cf3bd3b8d2638a0cd14e57839033d63c855114a0e12883bbc7a5106b0cfc01ad files/22emboss 110
 AUX README.Gentoo 1326 RMD160 bfaa4d7d1218d3bd4ea58d54d000da7f58b6bca6 SHA1 8cf13b8aa23c11f0af2aae06916970bf9d8a441f SHA256 33b517b977cc85824847bd6cf4113489a5554fb014f1a6b1d22d6f80c3487e9f
-MD5 615888722f8d6a0c918f936e0cc1cfcd files/README.Gentoo 1326
-RMD160 bfaa4d7d1218d3bd4ea58d54d000da7f58b6bca6 files/README.Gentoo 1326
-SHA256 33b517b977cc85824847bd6cf4113489a5554fb014f1a6b1d22d6f80c3487e9f files/README.Gentoo 1326
 AUX emboss-5.0.0-as-needed.patch 1751 RMD160 f43faab31a3d5afb4b73704ba597de578668ae48 SHA1 a108e5f68af9c14363bc56c849c9143fcb7675ba SHA256 e57a60d911e32f1aea16c079e2fd0910a5f7ed43752ea71094d3f3b7575617d3
-MD5 9fdd03308234a9284b8ffbf97f4d84d7 files/emboss-5.0.0-as-needed.patch 1751
-RMD160 f43faab31a3d5afb4b73704ba597de578668ae48 files/emboss-5.0.0-as-needed.patch 1751
-SHA256 e57a60d911e32f1aea16c079e2fd0910a5f7ed43752ea71094d3f3b7575617d3 files/emboss-5.0.0-as-needed.patch 1751
 AUX emboss-README.Gentoo-1 1474 RMD160 a116b4516cd0d8e0b28734bf1e51f1e0833737c4 SHA1 ec23610137ebddc3fc15976757d2cdebd741f9ec SHA256 e97558bbc8296f2e9395080061e494b282303ed69e1d6eb45554846617b47abd
-MD5 f625f2d9c5bdbdc6799947f73c93da7c files/emboss-README.Gentoo-1 1474
-RMD160 a116b4516cd0d8e0b28734bf1e51f1e0833737c4 files/emboss-README.Gentoo-1 1474
-SHA256 e97558bbc8296f2e9395080061e494b282303ed69e1d6eb45554846617b47abd files/emboss-README.Gentoo-1 1474
 DIST EMBOSS-4.0.0.tar.gz 17651607 RMD160 5b29ac2946a1315928581bf0e40a0f6b5023c599 SHA1 784c729f2d2e746339a90048277c9e4f052e036a SHA256 bbfd127adc064a5211542f3b5400cbb13c7f74d9171fd16b8531cee9fd11b231
 DIST EMBOSS-5.0.0.tar.gz 20666560 RMD160 1bf510c0919d991e4ba67182137448dee49bab4d SHA1 1ad4edc4808a8225fe8d574e8a7d0686be99cac6 SHA256 64e6f09b82a719ff26de7f21fdf7d2bd605d2c664384c1c7b48f9d245d5f40ae
 EBUILD emboss-4.0.0.ebuild 2985 RMD160 f97e44ba4e85b434862934d5f41b95c9148bb144 SHA1 1739fee6a460fb0e0e48150e5aac266d4fbcce8e SHA256 9465b53eb6ccc94ddfaee9e664d3bf705a529d64fcfbca0084e0cd37ce22c27c
-MD5 581b734e7316e20ffdb70433a20cb93b emboss-4.0.0.ebuild 2985
-RMD160 f97e44ba4e85b434862934d5f41b95c9148bb144 emboss-4.0.0.ebuild 2985
-SHA256 9465b53eb6ccc94ddfaee9e664d3bf705a529d64fcfbca0084e0cd37ce22c27c emboss-4.0.0.ebuild 2985
 EBUILD emboss-5.0.0.ebuild 3443 RMD160 e79a1e380c004634334b63edc1fd79d1ce23c44e SHA1 40e92f01e78e26905de61b9fbbd67400746aaa7a SHA256 4b05e9d49104a0e6f1d597ac3d5b69ff52fd85e742bfe206312f5333740f0006
-MD5 0f5972742f1b908215b5cecd040c6c1d emboss-5.0.0.ebuild 3443
-RMD160 e79a1e380c004634334b63edc1fd79d1ce23c44e emboss-5.0.0.ebuild 3443
-SHA256 4b05e9d49104a0e6f1d597ac3d5b69ff52fd85e742bfe206312f5333740f0006 emboss-5.0.0.ebuild 3443
 MISC ChangeLog 8254 RMD160 611978a6833d58763782335e8d228679935f220d SHA1 36c9344393e75f74cd16905be159ac8789fdde98 SHA256 03e8122b40bd8935ad6f00ed12e0e3edba8465815d4a5ca1180f14117cdc8a72
-MD5 a6e4531d60d804e7a571404619628fe7 ChangeLog 8254
-RMD160 611978a6833d58763782335e8d228679935f220d ChangeLog 8254
-SHA256 03e8122b40bd8935ad6f00ed12e0e3edba8465815d4a5ca1180f14117cdc8a72 ChangeLog 8254
 MISC metadata.xml 1021 RMD160 ee767f436af5f815ecb9526df9063438dab8eb14 SHA1 eff46db435f88e0b457ce2a38e5ff786ae6324e1 SHA256 0c5af548d0483d41a3344695cb04acaf0974fb56b70bc1e2ec0a9749ecbc45a0
-MD5 ecba11e4d50ee5cc740817f5becffa83 metadata.xml 1021
-RMD160 ee767f436af5f815ecb9526df9063438dab8eb14 metadata.xml 1021
-SHA256 0c5af548d0483d41a3344695cb04acaf0974fb56b70bc1e2ec0a9749ecbc45a0 metadata.xml 1021
-MD5 868d3a498e023c8ac4cd1ae2504bc8b0 files/digest-emboss-4.0.0 244
-RMD160 9ceca3f11bf27999c9a49c4ae6a438ef8640762f files/digest-emboss-4.0.0 244
-SHA256 4c40525329b260ca9b0ee00d4275b85fd29fc0ea18c51d58dac8534dd19b8179 files/digest-emboss-4.0.0 244
-MD5 0caaffc1f82cec66a5fc6616b4660d7a files/digest-emboss-5.0.0 244
-RMD160 ea37f795401907e7503afda947bd666f2f64c370 files/digest-emboss-5.0.0 244
-SHA256 885f5fd21381c69190836497ffc631c6ea138d73d6ba9c9654f75c00ab9c6f31 files/digest-emboss-5.0.0 244
diff --git a/sci-biology/emboss/files/digest-emboss-4.0.0 b/sci-biology/emboss/files/digest-emboss-4.0.0
deleted file mode 100644
index ffad1f9b9096..000000000000
--- a/sci-biology/emboss/files/digest-emboss-4.0.0
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 2ef912cfde4903129f2424d23d6da0d2 EMBOSS-4.0.0.tar.gz 17651607
-RMD160 5b29ac2946a1315928581bf0e40a0f6b5023c599 EMBOSS-4.0.0.tar.gz 17651607
-SHA256 bbfd127adc064a5211542f3b5400cbb13c7f74d9171fd16b8531cee9fd11b231 EMBOSS-4.0.0.tar.gz 17651607
diff --git a/sci-biology/emboss/files/digest-emboss-5.0.0 b/sci-biology/emboss/files/digest-emboss-5.0.0
deleted file mode 100644
index eccc0f1d9afe..000000000000
--- a/sci-biology/emboss/files/digest-emboss-5.0.0
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 be4c895220ad34afd65d450ba7d8e34b EMBOSS-5.0.0.tar.gz 20666560
-RMD160 1bf510c0919d991e4ba67182137448dee49bab4d EMBOSS-5.0.0.tar.gz 20666560
-SHA256 64e6f09b82a719ff26de7f21fdf7d2bd605d2c664384c1c7b48f9d245d5f40ae EMBOSS-5.0.0.tar.gz 20666560
diff --git a/sci-biology/finchtv/Manifest b/sci-biology/finchtv/Manifest
index 58997e9d578a..30eb3427b5b9 100644
--- a/sci-biology/finchtv/Manifest
+++ b/sci-biology/finchtv/Manifest
@@ -1,16 +1,4 @@
 DIST finchtv_1_3_1.tar.gz 6706911 RMD160 612224d5a77d5349c9b8e9d77b22eaf9a6bf52a3 SHA1 72271d4bad94a5f0125bf38fef76a095a90dacb1 SHA256 03fccbf1ab09b571bbf55d0b71dd86975513b7a6c8d54795055a184b4eda8858
 EBUILD finchtv-1.3.1.ebuild 942 RMD160 61bbbe29c5b0cd896adf8adbb95bf87d78e023d9 SHA1 0055bf9f7b9ea83de0d51c2746ccfd622c4cd85c SHA256 8f94eebdc7b862b7ef09f30e2799b2c190bfed823cf9db77e657a6704f37cea9
-MD5 5f5d18845c2b0ea3fcc105169f477ac6 finchtv-1.3.1.ebuild 942
-RMD160 61bbbe29c5b0cd896adf8adbb95bf87d78e023d9 finchtv-1.3.1.ebuild 942
-SHA256 8f94eebdc7b862b7ef09f30e2799b2c190bfed823cf9db77e657a6704f37cea9 finchtv-1.3.1.ebuild 942
 MISC ChangeLog 454 RMD160 f65ddbc3e19657ca7188a087f1664085fe4a9f26 SHA1 0abfee5842ebd8273cae7cf5ddeb25a33d02e941 SHA256 80ee3a2a7ed495d8792a78f23adcfdba6238d817891e8613d156a53ea27c24b0
-MD5 e16650fd9ed59f6e48fc41e9c017a6c5 ChangeLog 454
-RMD160 f65ddbc3e19657ca7188a087f1664085fe4a9f26 ChangeLog 454
-SHA256 80ee3a2a7ed495d8792a78f23adcfdba6238d817891e8613d156a53ea27c24b0 ChangeLog 454
 MISC metadata.xml 356 RMD160 10bf14f9d510f937a947c375816de937444f385f SHA1 950fc370a0a4f1e2d451a9991373c216f3a8ace8 SHA256 d79a57c5d9d649482a5a226aca103d77e8ea627c74295f4268c7ebcba813f66a
-MD5 fde1ca28755a8d2324bb6503177ccca8 metadata.xml 356
-RMD160 10bf14f9d510f937a947c375816de937444f385f metadata.xml 356
-SHA256 d79a57c5d9d649482a5a226aca103d77e8ea627c74295f4268c7ebcba813f66a metadata.xml 356
-MD5 c0b29766c4d2c652f878f33b014d3975 files/digest-finchtv-1.3.1 244
-RMD160 c7a2b75ba10c077c8d20fa231136d1292abbbef7 files/digest-finchtv-1.3.1 244
-SHA256 dfd95d1ddf928664d7a9908edab8d0527a1620c11ff62a3acd0778987be9cd51 files/digest-finchtv-1.3.1 244
diff --git a/sci-biology/finchtv/files/digest-finchtv-1.3.1 b/sci-biology/finchtv/files/digest-finchtv-1.3.1
deleted file mode 100644
index 043cb64ce714..000000000000
--- a/sci-biology/finchtv/files/digest-finchtv-1.3.1
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 bafea0b08c5348cbe745d1a4857948a4 finchtv_1_3_1.tar.gz 6706911
-RMD160 612224d5a77d5349c9b8e9d77b22eaf9a6bf52a3 finchtv_1_3_1.tar.gz 6706911
-SHA256 03fccbf1ab09b571bbf55d0b71dd86975513b7a6c8d54795055a184b4eda8858 finchtv_1_3_1.tar.gz 6706911
diff --git a/sci-biology/foldingathome/Manifest b/sci-biology/foldingathome/Manifest
index ca394bf209d4..efe806b9b95f 100644
--- a/sci-biology/foldingathome/Manifest
+++ b/sci-biology/foldingathome/Manifest
@@ -1,73 +1,15 @@
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
-
 AUX 5.91_beta/fah-init 1027 RMD160 2599f16edf444125f75f56b0c3b8e4b54a746257 SHA1 610e7debaa2aeac944feef3a7d785a51e77f74e1 SHA256 2979b13324806322c737a7738748eb6108c3b60ac7545307febada4eb8ecf55c
-MD5 339af8f5766c897b40117953d2d6d1b7 files/5.91_beta/fah-init 1027
-RMD160 2599f16edf444125f75f56b0c3b8e4b54a746257 files/5.91_beta/fah-init 1027
-SHA256 2979b13324806322c737a7738748eb6108c3b60ac7545307febada4eb8ecf55c files/5.91_beta/fah-init 1027
 AUX 5.91_beta/folding-conf.d 779 RMD160 292c987801c5e144bf0743d10ab855d0ce2c7788 SHA1 fe49a81e3e56d9ad6522f2a2956e09a34af7e3ac SHA256 7adbe7c3604390617a12ec18fd9469ce036d34f38d37e395a539f52c7a075235
-MD5 d78210d2ed469938e001e6dc0fe6a5eb files/5.91_beta/folding-conf.d 779
-RMD160 292c987801c5e144bf0743d10ab855d0ce2c7788 files/5.91_beta/folding-conf.d 779
-SHA256 7adbe7c3604390617a12ec18fd9469ce036d34f38d37e395a539f52c7a075235 files/5.91_beta/folding-conf.d 779
 AUX 5.91_beta/initfolding 155 RMD160 c0d81691f5081778672904758769ec305f68c1b1 SHA1 df47a4c6798737f1c6493e8572b0c15b733b254f SHA256 3e291a24a2aea147ce6d609dfa14d178aed907c05ce45636a7983a7f398eee04
-MD5 b88fe554ac14eaeba8b97cb9c1a629d2 files/5.91_beta/initfolding 155
-RMD160 c0d81691f5081778672904758769ec305f68c1b1 files/5.91_beta/initfolding 155
-SHA256 3e291a24a2aea147ce6d609dfa14d178aed907c05ce45636a7983a7f398eee04 files/5.91_beta/initfolding 155
 AUX copy_client_config-5.0.2-r1 393 RMD160 530642f45d1d83612aa6a8048f6ed5fbab67176b SHA1 5a3951b4fe98f62ae3e20269dabd5cfbf3554d77 SHA256 ddfe7ace77006273d1ac64aec4280fdecf52ea0f435dacf2d1bba3de3da42abe
-MD5 71ad6348b9f8b367f2417eddf75417c7 files/copy_client_config-5.0.2-r1 393
-RMD160 530642f45d1d83612aa6a8048f6ed5fbab67176b files/copy_client_config-5.0.2-r1 393
-SHA256 ddfe7ace77006273d1ac64aec4280fdecf52ea0f435dacf2d1bba3de3da42abe files/copy_client_config-5.0.2-r1 393
 AUX folding-conf.d-r1 1172 RMD160 1c76ea630aa18e1078642f198af46a46eeb5ce62 SHA1 e8940c6f63cd86f570ffebeac22a9e265dbde6dd SHA256 48e49f73fd3c5e45f6ffa99c243d0ff5068416db90d5fd3c447f0118dd8ec154
-MD5 3174784abb8ed1da2fc846d722aeffe5 files/folding-conf.d-r1 1172
-RMD160 1c76ea630aa18e1078642f198af46a46eeb5ce62 files/folding-conf.d-r1 1172
-SHA256 48e49f73fd3c5e45f6ffa99c243d0ff5068416db90d5fd3c447f0118dd8ec154 files/folding-conf.d-r1 1172
 AUX init-5.0.2-r3 1478 RMD160 06e256fa528abeb7378addbe795efb5d95c71852 SHA1 46fddec47f30e8a850c056327412c335d29a661e SHA256 646c350f9777b0a1df3901f963523d04b01d0997aae4f6b16b97bc9e7b031582
-MD5 b695ee5884feb42cd5678eb977d862cc files/init-5.0.2-r3 1478
-RMD160 06e256fa528abeb7378addbe795efb5d95c71852 files/init-5.0.2-r3 1478
-SHA256 646c350f9777b0a1df3901f963523d04b01d0997aae4f6b16b97bc9e7b031582 files/init-5.0.2-r3 1478
 AUX init-5.0.2-r5 1602 RMD160 4680d24496b69512d6223fb420258ad5184241fa SHA1 db3112edc993c69cd285ac0fc1bee41107c7075b SHA256 99e3eae808935333432becf04095063872e3c9c4aeb834beb88e82f3e8627c9c
-MD5 b6f1780a9b3a2c0694d3e77e6517f36d files/init-5.0.2-r5 1602
-RMD160 4680d24496b69512d6223fb420258ad5184241fa files/init-5.0.2-r5 1602
-SHA256 99e3eae808935333432becf04095063872e3c9c4aeb834beb88e82f3e8627c9c files/init-5.0.2-r5 1602
 AUX initfolding-r2 150 RMD160 160f6f4c8e15b5e5694cdbe53f08adcfd51c4f20 SHA1 8a57653fe7ac194cdb72d2ed9058436408529e0b SHA256 52375ccd65d9f7cbf09e0b2915f54a882726bf7c377353747fa3ff8fc2cedacb
-MD5 f3a9e0a439c14bd3d328cea6e3af1540 files/initfolding-r2 150
-RMD160 160f6f4c8e15b5e5694cdbe53f08adcfd51c4f20 files/initfolding-r2 150
-SHA256 52375ccd65d9f7cbf09e0b2915f54a882726bf7c377353747fa3ff8fc2cedacb files/initfolding-r2 150
 DIST FAH502-Linux.exe 249236 RMD160 e63be66c70447095eb7054d855316f42e0364971 SHA1 eb480011f3aaf1cea92b001ff15634670142674c SHA256 02e2d3665a6e8f8fc89c7751b8faadff6885d34860643bdd4107d92825754d33
 DIST FAH_SMP_Linux.tgz 138220 RMD160 019bc3511a70a31bc0c67780c75be78ca2dc29b8 SHA1 b7f556b76798aefe186527b1e27c106af20ba1e6 SHA256 af4cb6f88009378788c055112a2612f0a7bf8a93b22af68888eee660fa668040
 EBUILD foldingathome-5.0.2-r3.ebuild 1973 RMD160 ee036cabe6416bf5d219e092059584c329064596 SHA1 9afa835a928dc66bf99eaa2247ba669993cdecf9 SHA256 39ea674899372f32c5b352bb89b8e1c9b52ff0f8eadefd4141ddaa3b42385dc6
-MD5 b438014c1f36b9876cf85163380f95b9 foldingathome-5.0.2-r3.ebuild 1973
-RMD160 ee036cabe6416bf5d219e092059584c329064596 foldingathome-5.0.2-r3.ebuild 1973
-SHA256 39ea674899372f32c5b352bb89b8e1c9b52ff0f8eadefd4141ddaa3b42385dc6 foldingathome-5.0.2-r3.ebuild 1973
 EBUILD foldingathome-5.0.2-r5.ebuild 1991 RMD160 7071cca259c14835ece57a6b68398f0f201dd30e SHA1 3af59b6238a5fc5740759789e448c44487e04d19 SHA256 e1ef574d0f1c49b5ecc2784dcd0dac1ca2f2518e68b4a7bc826233990d647907
-MD5 d4717af7494af3d49297480f617b1536 foldingathome-5.0.2-r5.ebuild 1991
-RMD160 7071cca259c14835ece57a6b68398f0f201dd30e foldingathome-5.0.2-r5.ebuild 1991
-SHA256 e1ef574d0f1c49b5ecc2784dcd0dac1ca2f2518e68b4a7bc826233990d647907 foldingathome-5.0.2-r5.ebuild 1991
 EBUILD foldingathome-5.91_beta.ebuild 1803 RMD160 bbd497a648e34f94b5016ef1d4ce93d215ed72b7 SHA1 af1f2ad2b15aa65ec24f945f3581a5466e1b1b26 SHA256 6468e5a8222fcfdd3483f78a9a2c4d972f94000d77ed45b52733bdc8745ca72b
-MD5 bbbac24575db3a000a20d36075fe0550 foldingathome-5.91_beta.ebuild 1803
-RMD160 bbd497a648e34f94b5016ef1d4ce93d215ed72b7 foldingathome-5.91_beta.ebuild 1803
-SHA256 6468e5a8222fcfdd3483f78a9a2c4d972f94000d77ed45b52733bdc8745ca72b foldingathome-5.91_beta.ebuild 1803
 MISC ChangeLog 7368 RMD160 33771c36a13b6dd6d1896e4b8dc2684c59a60935 SHA1 e71c088e2df0ecd24bcb408f924fc1a81f38fd78 SHA256 521ee5e7e5c9b127ffa913cea9151db0a5dff56695c5c9872e8e2b4e33259faf
-MD5 2b5e941c290bab5418577708dbacc31a ChangeLog 7368
-RMD160 33771c36a13b6dd6d1896e4b8dc2684c59a60935 ChangeLog 7368
-SHA256 521ee5e7e5c9b127ffa913cea9151db0a5dff56695c5c9872e8e2b4e33259faf ChangeLog 7368
 MISC metadata.xml 164 RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c SHA1 61a50baedfd041e663d6c2a41a28b57e22dbb6de SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f
-MD5 86813ca8050bc98ba326cb74e88150a5 metadata.xml 164
-RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c metadata.xml 164
-SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f metadata.xml 164
-MD5 d39886a997a5021a1cb3be852aa0d2de files/digest-foldingathome-5.0.2-r3 229
-RMD160 a1ba0061fa5cf60fc4d9e4e4762025e8ec481d25 files/digest-foldingathome-5.0.2-r3 229
-SHA256 bb8544c52290ebf517fbd3ebd292bb4108f89bb4b667420fad3e9ae4e3b019c9 files/digest-foldingathome-5.0.2-r3 229
-MD5 d39886a997a5021a1cb3be852aa0d2de files/digest-foldingathome-5.0.2-r5 229
-RMD160 a1ba0061fa5cf60fc4d9e4e4762025e8ec481d25 files/digest-foldingathome-5.0.2-r5 229
-SHA256 bb8544c52290ebf517fbd3ebd292bb4108f89bb4b667420fad3e9ae4e3b019c9 files/digest-foldingathome-5.0.2-r5 229
-MD5 bfe6f4f82fa3db539d4f3eb7aae8b371 files/digest-foldingathome-5.91_beta 232
-RMD160 665754efabcff1f5ae87b3e20b16e7ac155cb2dd files/digest-foldingathome-5.91_beta 232
-SHA256 e92f4b126fe97f71f6f3501fea2a4468b17692333132288c27fec7f21f3c2353 files/digest-foldingathome-5.91_beta 232
------BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.5 (GNU/Linux)
-
-iD8DBQFGlmKDKhnDs22gwa8RAtLJAJ97ga2QnGyqSLgSAN0R4GhKK4Uw1wCdHSul
-jT7KoPGnQ3IfCOeaxdyFo/8=
-=Gtzk
------END PGP SIGNATURE-----
diff --git a/sci-biology/foldingathome/files/digest-foldingathome-5.0.2-r3 b/sci-biology/foldingathome/files/digest-foldingathome-5.0.2-r3
deleted file mode 100644
index f8fd9750603a..000000000000
--- a/sci-biology/foldingathome/files/digest-foldingathome-5.0.2-r3
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 4855e808fb94e6d2c5fde345aea0cdc3 FAH502-Linux.exe 249236
-RMD160 e63be66c70447095eb7054d855316f42e0364971 FAH502-Linux.exe 249236
-SHA256 02e2d3665a6e8f8fc89c7751b8faadff6885d34860643bdd4107d92825754d33 FAH502-Linux.exe 249236
diff --git a/sci-biology/foldingathome/files/digest-foldingathome-5.0.2-r5 b/sci-biology/foldingathome/files/digest-foldingathome-5.0.2-r5
deleted file mode 100644
index f8fd9750603a..000000000000
--- a/sci-biology/foldingathome/files/digest-foldingathome-5.0.2-r5
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 4855e808fb94e6d2c5fde345aea0cdc3 FAH502-Linux.exe 249236
-RMD160 e63be66c70447095eb7054d855316f42e0364971 FAH502-Linux.exe 249236
-SHA256 02e2d3665a6e8f8fc89c7751b8faadff6885d34860643bdd4107d92825754d33 FAH502-Linux.exe 249236
diff --git a/sci-biology/foldingathome/files/digest-foldingathome-5.91_beta b/sci-biology/foldingathome/files/digest-foldingathome-5.91_beta
deleted file mode 100644
index e53ca6e33b3f..000000000000
--- a/sci-biology/foldingathome/files/digest-foldingathome-5.91_beta
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 aef7cfdb6f4462f74b8f79d41acc29fa FAH_SMP_Linux.tgz 138220
-RMD160 019bc3511a70a31bc0c67780c75be78ca2dc29b8 FAH_SMP_Linux.tgz 138220
-SHA256 af4cb6f88009378788c055112a2612f0a7bf8a93b22af68888eee660fa668040 FAH_SMP_Linux.tgz 138220
diff --git a/sci-biology/generic-genome-browser/Manifest b/sci-biology/generic-genome-browser/Manifest
index e7e84fa9d170..9226e4f28db0 100644
--- a/sci-biology/generic-genome-browser/Manifest
+++ b/sci-biology/generic-genome-browser/Manifest
@@ -1,26 +1,4 @@
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
-
 DIST Generic-Genome-Browser-1.58.tar.gz 1207583 RMD160 fff1a264eaab913033fc87718ccc8d9c8e26588b SHA1 2e8b0899fcef8c0275fcb97d62f37ca8e189ec28 SHA256 f49a6c3efca44652c84d9433fd810ad876021475c5b0dffd604448fe91a4bfa8
 EBUILD generic-genome-browser-1.58.ebuild 2036 RMD160 366d728342b8c87f33d61814b4c1b94254af65bf SHA1 a3a73b6631b691ed02e3f6d21146566ffd52f0f8 SHA256 b348315e82b01abe59b552df8d58e5bf2bcb051edb4117630d7841e55600ecb2
-MD5 4a3c54a128036b4a86ef93a4a951d12a generic-genome-browser-1.58.ebuild 2036
-RMD160 366d728342b8c87f33d61814b4c1b94254af65bf generic-genome-browser-1.58.ebuild 2036
-SHA256 b348315e82b01abe59b552df8d58e5bf2bcb051edb4117630d7841e55600ecb2 generic-genome-browser-1.58.ebuild 2036
 MISC ChangeLog 1800 RMD160 945635f595dee6335828affd4d042c173e570cf3 SHA1 419375011a04db77048ac39dfdaffc613dfdcb86 SHA256 a59e36913cf1616e2e125dfa1a5e0f2c5140a61e3701bf0e80107298053f5f9d
-MD5 9a3359eda2c923ddc32efcce419d7b3f ChangeLog 1800
-RMD160 945635f595dee6335828affd4d042c173e570cf3 ChangeLog 1800
-SHA256 a59e36913cf1616e2e125dfa1a5e0f2c5140a61e3701bf0e80107298053f5f9d ChangeLog 1800
 MISC metadata.xml 165 RMD160 b247a16b6552b292d1249ff4e8ea5060ad2c4372 SHA1 a9f91a3a303f4c85430e21eca09913e1c9426366 SHA256 560c375768c8e164d954d61924f110da785b4771012cb830963eaa267a319132
-MD5 aec0225cc3c4bc9490275e897849b449 metadata.xml 165
-RMD160 b247a16b6552b292d1249ff4e8ea5060ad2c4372 metadata.xml 165
-SHA256 560c375768c8e164d954d61924f110da785b4771012cb830963eaa267a319132 metadata.xml 165
-MD5 a92f5fde5beed7075a0f0f8613ad7e6b files/digest-generic-genome-browser-1.58 286
-RMD160 9e9bbd57bf6562e0c18880187924f89403c37f0a files/digest-generic-genome-browser-1.58 286
-SHA256 92556082a0e92947edd2b5546c0649420b083eb429fa86d9cae61e81a94fe0cb files/digest-generic-genome-browser-1.58 286
------BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.5 (GNU/Linux)
-
-iD8DBQFGrMlmyuNVb5qfaOYRAhzmAJ0epvLZoAUf4+iakXz/nNRVVfhvfQCfYx7X
-4qyFRS0a3QCV+gWr8NZBoiQ=
-=fpui
------END PGP SIGNATURE-----
diff --git a/sci-biology/generic-genome-browser/files/digest-generic-genome-browser-1.58 b/sci-biology/generic-genome-browser/files/digest-generic-genome-browser-1.58
deleted file mode 100644
index 8296b65bc2f6..000000000000
--- a/sci-biology/generic-genome-browser/files/digest-generic-genome-browser-1.58
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 582a53ef6906eea02ecdd7fa3065928e Generic-Genome-Browser-1.58.tar.gz 1207583
-RMD160 fff1a264eaab913033fc87718ccc8d9c8e26588b Generic-Genome-Browser-1.58.tar.gz 1207583
-SHA256 f49a6c3efca44652c84d9433fd810ad876021475c5b0dffd604448fe91a4bfa8 Generic-Genome-Browser-1.58.tar.gz 1207583
diff --git a/sci-biology/gibbs/Manifest b/sci-biology/gibbs/Manifest
index 39846d6adc92..ee3965b4ac8a 100644
--- a/sci-biology/gibbs/Manifest
+++ b/sci-biology/gibbs/Manifest
@@ -1,30 +1,5 @@
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
-
 AUX gibbs-demo 313 RMD160 6c986ae90b15f400884146c4eb3bde9fd05696e9 SHA1 c615f608fd85cb409ffbdacafaa90e46c0d8a26b SHA256 018ea72b23f41bd1b5945a58c4e577fb1274484e624fc8c10f96b23bf3d827b4
-MD5 5d1c8a0323c1506ec063c702ff2013ba files/gibbs-demo 313
-RMD160 6c986ae90b15f400884146c4eb3bde9fd05696e9 files/gibbs-demo 313
-SHA256 018ea72b23f41bd1b5945a58c4e577fb1274484e624fc8c10f96b23bf3d827b4 files/gibbs-demo 313
 DIST gibbs9_95.tar 598016 RMD160 6c0231b523fc8722af8fbc87172552dbe64de385 SHA1 5b3b4a8bf4a7f67d31f86e6dff0054cbcda98481 SHA256 8d358fb29ad79e03aec142837d63ebd4ddce56a38e36d7d91a668ece12fd78de
 EBUILD gibbs-1995.9.ebuild 1210 RMD160 d36f9357fd636a223ab649cd42f2958e05f1d6da SHA1 a3b7cf06e71e309efa6a245fcf5c598a3600ca43 SHA256 d0addec202bf7370654adedfdf6add9f2d8533d392e246a10bf0ea8bb656ed3d
-MD5 340cd9bced8b4abfa09f74ca33da6f9f gibbs-1995.9.ebuild 1210
-RMD160 d36f9357fd636a223ab649cd42f2958e05f1d6da gibbs-1995.9.ebuild 1210
-SHA256 d0addec202bf7370654adedfdf6add9f2d8533d392e246a10bf0ea8bb656ed3d gibbs-1995.9.ebuild 1210
 MISC ChangeLog 1077 RMD160 dd26e640703c6a5fa016db9fde93064f353397c2 SHA1 fded481e8272af5c5a1023afaa1eec8b1b7ad525 SHA256 3b27c96a5e84f47454a57b836d6dd4f0fe8bc7838556dffb45e14f3f119ace45
-MD5 f52c06457aad957c51c4875c1c5ade40 ChangeLog 1077
-RMD160 dd26e640703c6a5fa016db9fde93064f353397c2 ChangeLog 1077
-SHA256 3b27c96a5e84f47454a57b836d6dd4f0fe8bc7838556dffb45e14f3f119ace45 ChangeLog 1077
 MISC metadata.xml 387 RMD160 3c4408949179f2c1d55cc49423d944ce077d3d03 SHA1 d3854dbe74c13d22b3eb6eec2c90720bafb87c50 SHA256 426934f62d87bc1d4135a8f27f06297abfb36321f20ed96f3b32beb7f7a44e27
-MD5 feff9fbec978c3c3cda3a0ef4067bdb5 metadata.xml 387
-RMD160 3c4408949179f2c1d55cc49423d944ce077d3d03 metadata.xml 387
-SHA256 426934f62d87bc1d4135a8f27f06297abfb36321f20ed96f3b32beb7f7a44e27 metadata.xml 387
-MD5 a6dec0fbfe8e666ccc13e6f7528227ab files/digest-gibbs-1995.9 220
-RMD160 d115b419f0808061cfb8ddcea5920ae491447df3 files/digest-gibbs-1995.9 220
-SHA256 f765a330e219522dd5e7b38dc8fed1b1e70392046121ad4f86964985a0a858e1 files/digest-gibbs-1995.9 220
------BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.1 (GNU/Linux)
-
-iD8DBQFF3PDVz974XjDVpbkRArAWAJ9gFCGzW7vZWNqP2/m8sAEC4e6LXACfQh1/
-NlJhGYs638N6NhrJfob54LI=
-=xKNz
------END PGP SIGNATURE-----
diff --git a/sci-biology/gibbs/files/digest-gibbs-1995.9 b/sci-biology/gibbs/files/digest-gibbs-1995.9
deleted file mode 100644
index 90e183104e1a..000000000000
--- a/sci-biology/gibbs/files/digest-gibbs-1995.9
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 42ec045ea1da932814e645c256c48f38 gibbs9_95.tar 598016
-RMD160 6c0231b523fc8722af8fbc87172552dbe64de385 gibbs9_95.tar 598016
-SHA256 8d358fb29ad79e03aec142837d63ebd4ddce56a38e36d7d91a668ece12fd78de gibbs9_95.tar 598016
diff --git a/sci-biology/hmmer/Manifest b/sci-biology/hmmer/Manifest
index 04b66aced2d1..10ef12dd729a 100644
--- a/sci-biology/hmmer/Manifest
+++ b/sci-biology/hmmer/Manifest
@@ -1,23 +1,5 @@
 DIST hmmer-2.3.2.tar.gz 1024933 RMD160 4bf25fc71f332849c76b0a05bca24e88241cee67 SHA1 aa34cb97cbc43ff3bd92dd111ba5677298fe2d40 SHA256 d20e1779fcdff34ab4e986ea74a6c4ac5c5f01da2993b14e92c94d2f076828b4
 EBUILD hmmer-2.3.2-r1.ebuild 1170 RMD160 3d86c373b376621d1d05430df753631ee30d7842 SHA1 79cfc513488098421a701c17f35ae638a9028901 SHA256 d518992592fdb748d3b28a7e8f5f9692e08c82b627fd43c553c55fada25c0b34
-MD5 d0682f32d661f8c71bd4c5de37d9d6b2 hmmer-2.3.2-r1.ebuild 1170
-RMD160 3d86c373b376621d1d05430df753631ee30d7842 hmmer-2.3.2-r1.ebuild 1170
-SHA256 d518992592fdb748d3b28a7e8f5f9692e08c82b627fd43c553c55fada25c0b34 hmmer-2.3.2-r1.ebuild 1170
 EBUILD hmmer-2.3.2-r2.ebuild 1169 RMD160 e048eb49d86289f7d401283318ffad1614beadf6 SHA1 de8c8a9c3f32fafe93a4392ae6369c6f8e86b53b SHA256 783b41468213bbe46a3cf52882e206461a2c1e2979dff5cfdbb1f89b2bf7a240
-MD5 8800975867ccd4ced2cf234a812aeaa9 hmmer-2.3.2-r2.ebuild 1169
-RMD160 e048eb49d86289f7d401283318ffad1614beadf6 hmmer-2.3.2-r2.ebuild 1169
-SHA256 783b41468213bbe46a3cf52882e206461a2c1e2979dff5cfdbb1f89b2bf7a240 hmmer-2.3.2-r2.ebuild 1169
 MISC ChangeLog 3411 RMD160 bfdcde701d6e11e94221ff15f130b318cfa486a4 SHA1 e514d10bee81b9020f3805151e18126bbedadce4 SHA256 8be01c6d98b221b84375dd300ab030c4d6e05d4b884bfebc228e48085b586070
-MD5 3d8d13e7ef1ca5e364a5334b13dcd1f0 ChangeLog 3411
-RMD160 bfdcde701d6e11e94221ff15f130b318cfa486a4 ChangeLog 3411
-SHA256 8be01c6d98b221b84375dd300ab030c4d6e05d4b884bfebc228e48085b586070 ChangeLog 3411
 MISC metadata.xml 165 RMD160 b247a16b6552b292d1249ff4e8ea5060ad2c4372 SHA1 a9f91a3a303f4c85430e21eca09913e1c9426366 SHA256 560c375768c8e164d954d61924f110da785b4771012cb830963eaa267a319132
-MD5 aec0225cc3c4bc9490275e897849b449 metadata.xml 165
-RMD160 b247a16b6552b292d1249ff4e8ea5060ad2c4372 metadata.xml 165
-SHA256 560c375768c8e164d954d61924f110da785b4771012cb830963eaa267a319132 metadata.xml 165
-MD5 28575eb6c51470d50c9aedd9186adf55 files/digest-hmmer-2.3.2-r1 238
-RMD160 f05bc343f59359199aa880b37b04f1ba92d4e6c4 files/digest-hmmer-2.3.2-r1 238
-SHA256 ca53d7d150ceecc4efcaff3b70686a592cd3ed0647e2ddfff02963b24f84e123 files/digest-hmmer-2.3.2-r1 238
-MD5 28575eb6c51470d50c9aedd9186adf55 files/digest-hmmer-2.3.2-r2 238
-RMD160 f05bc343f59359199aa880b37b04f1ba92d4e6c4 files/digest-hmmer-2.3.2-r2 238
-SHA256 ca53d7d150ceecc4efcaff3b70686a592cd3ed0647e2ddfff02963b24f84e123 files/digest-hmmer-2.3.2-r2 238
diff --git a/sci-biology/hmmer/files/digest-hmmer-2.3.2-r1 b/sci-biology/hmmer/files/digest-hmmer-2.3.2-r1
deleted file mode 100644
index cbdb73059c92..000000000000
--- a/sci-biology/hmmer/files/digest-hmmer-2.3.2-r1
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 5f073340c0cf761288f961a73821228a hmmer-2.3.2.tar.gz 1024933
-RMD160 4bf25fc71f332849c76b0a05bca24e88241cee67 hmmer-2.3.2.tar.gz 1024933
-SHA256 d20e1779fcdff34ab4e986ea74a6c4ac5c5f01da2993b14e92c94d2f076828b4 hmmer-2.3.2.tar.gz 1024933
diff --git a/sci-biology/hmmer/files/digest-hmmer-2.3.2-r2 b/sci-biology/hmmer/files/digest-hmmer-2.3.2-r2
deleted file mode 100644
index cbdb73059c92..000000000000
--- a/sci-biology/hmmer/files/digest-hmmer-2.3.2-r2
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 5f073340c0cf761288f961a73821228a hmmer-2.3.2.tar.gz 1024933
-RMD160 4bf25fc71f332849c76b0a05bca24e88241cee67 hmmer-2.3.2.tar.gz 1024933
-SHA256 d20e1779fcdff34ab4e986ea74a6c4ac5c5f01da2993b14e92c94d2f076828b4 hmmer-2.3.2.tar.gz 1024933
diff --git a/sci-biology/mafft/Manifest b/sci-biology/mafft/Manifest
index 551ff80cf279..9bf4d3cc2d8f 100644
--- a/sci-biology/mafft/Manifest
+++ b/sci-biology/mafft/Manifest
@@ -1,24 +1,6 @@
 DIST mafft-5.861-src.tgz 294337 RMD160 120130662e7353f8f310911a5b52657520ffe5cf SHA1 f140a579ecf81474ff5205a651155050655baa40 SHA256 c76466406797bcf13e07a4d877ba2053d06585116a498775f03252aa9843c5d9
 DIST mafft-6.240-src.tgz 657197 RMD160 1cb77af7a5a6b9ab818560d9626e746fb7a3b839 SHA1 8fc05350d9dcf8a9f56bdeed20790a4e1f21ceba SHA256 d0183ab1d6a5e0d1132b95cb917fedb3b6dc16c38d3fde35d7140ecdca555e8f
 EBUILD mafft-5.861-r1.ebuild 813 RMD160 4ad40700b9653c26c43504bb13d3873808b9da0a SHA1 67b78cfd426ec592f2d6367ac0c74b1dbb41ad94 SHA256 1ffb35bae39162aceaf014208c40472848e134a7c3f1a9427ce7a7356145f84a
-MD5 1971dc147139aef883d8e652b890c9da mafft-5.861-r1.ebuild 813
-RMD160 4ad40700b9653c26c43504bb13d3873808b9da0a mafft-5.861-r1.ebuild 813
-SHA256 1ffb35bae39162aceaf014208c40472848e134a7c3f1a9427ce7a7356145f84a mafft-5.861-r1.ebuild 813
 EBUILD mafft-6.240.ebuild 810 RMD160 a290ee8a6bb6073f7d2b6eb170fd7b4286453422 SHA1 2878dfb65f12fc26c187f898cce2614aaf9b14ab SHA256 9cacd12019070ef67c3ac1309628567ffa0bd2a39c814cd76a9926ed48cfdc19
-MD5 34876df48f035361953868063701309a mafft-6.240.ebuild 810
-RMD160 a290ee8a6bb6073f7d2b6eb170fd7b4286453422 mafft-6.240.ebuild 810
-SHA256 9cacd12019070ef67c3ac1309628567ffa0bd2a39c814cd76a9926ed48cfdc19 mafft-6.240.ebuild 810
 MISC ChangeLog 841 RMD160 1cd7ef6efb285fab112f36b858d1e5f9ee948a18 SHA1 944e55a3a894a12a29baa8608058cb1e1bcd6ef3 SHA256 7b4b10bea5ff66160708296440283b92d5e3ddb62075eacfd0731b803c187ac3
-MD5 808ba2a231578bc2fad6802cb850113c ChangeLog 841
-RMD160 1cd7ef6efb285fab112f36b858d1e5f9ee948a18 ChangeLog 841
-SHA256 7b4b10bea5ff66160708296440283b92d5e3ddb62075eacfd0731b803c187ac3 ChangeLog 841
 MISC metadata.xml 164 RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c SHA1 61a50baedfd041e663d6c2a41a28b57e22dbb6de SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f
-MD5 86813ca8050bc98ba326cb74e88150a5 metadata.xml 164
-RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c metadata.xml 164
-SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f metadata.xml 164
-MD5 28084e84b316686364a0cb65cd3d4ccd files/digest-mafft-5.861-r1 238
-RMD160 bcd6dac755d56b2249729fd0416aa47161a2795c files/digest-mafft-5.861-r1 238
-SHA256 670acf7b68f6a75a05585012bafbce04b52bddcef5e80aa9ca3ed7ef63d5b1ad files/digest-mafft-5.861-r1 238
-MD5 5ae0892b3b3bffb7aaf41b3b890ff24a files/digest-mafft-6.240 238
-RMD160 ea515ceec1eb03be39a15c0f14ac1a2f655697ad files/digest-mafft-6.240 238
-SHA256 f1e9910e18b44f8648b0f8606e4b2936326c500dc93e278c98832fd893dc651d files/digest-mafft-6.240 238
diff --git a/sci-biology/mafft/files/digest-mafft-5.861-r1 b/sci-biology/mafft/files/digest-mafft-5.861-r1
deleted file mode 100644
index 2b72d7eeaccf..000000000000
--- a/sci-biology/mafft/files/digest-mafft-5.861-r1
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 49612721f7095be702cbbf6c6b495fc1 mafft-5.861-src.tgz 294337
-RMD160 120130662e7353f8f310911a5b52657520ffe5cf mafft-5.861-src.tgz 294337
-SHA256 c76466406797bcf13e07a4d877ba2053d06585116a498775f03252aa9843c5d9 mafft-5.861-src.tgz 294337
diff --git a/sci-biology/mafft/files/digest-mafft-6.240 b/sci-biology/mafft/files/digest-mafft-6.240
deleted file mode 100644
index 945dc6042d8b..000000000000
--- a/sci-biology/mafft/files/digest-mafft-6.240
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 e603c1dbef35913d46286d5b98b601a3 mafft-6.240-src.tgz 657197
-RMD160 1cb77af7a5a6b9ab818560d9626e746fb7a3b839 mafft-6.240-src.tgz 657197
-SHA256 d0183ab1d6a5e0d1132b95cb917fedb3b6dc16c38d3fde35d7140ecdca555e8f mafft-6.240-src.tgz 657197
diff --git a/sci-biology/mammoth/Manifest b/sci-biology/mammoth/Manifest
index 3c85ed75e6d5..b622fbc807cf 100644
--- a/sci-biology/mammoth/Manifest
+++ b/sci-biology/mammoth/Manifest
@@ -1,30 +1,5 @@
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
-
 AUX 1.0-consistent-system-intrinsic.patch 680 RMD160 71a2feeb7e856d37c5fa7c56e685f29ca1be0eaa SHA1 f0d388f1bea4badd8a127242057d8aeb01c8d974 SHA256 34f47d312af131414154a244218bb4e548d51a3d34b9ed4379c2ec90fba094ca
-MD5 5a8b546609c54dd66d47e23d23e6f878 files/1.0-consistent-system-intrinsic.patch 680
-RMD160 71a2feeb7e856d37c5fa7c56e685f29ca1be0eaa files/1.0-consistent-system-intrinsic.patch 680
-SHA256 34f47d312af131414154a244218bb4e548d51a3d34b9ed4379c2ec90fba094ca files/1.0-consistent-system-intrinsic.patch 680
 DIST mammoth-1.0-src.tgz 319617 RMD160 32b6c9c994ba804fab352cc9cfaa3358784f1052 SHA1 79b5b3ef8873645cf102516df1de7d9b97f206c2 SHA256 7a21bc47db4a47cc5ebeeb4c46761a79eece0a802104a3d6189f388a03e59de2
 EBUILD mammoth-1.0.ebuild 1331 RMD160 928510b1f10053c061c71931b2fb4b74bc7c22e7 SHA1 3edf299bc4936b5b628f99d65fd5da320819cc57 SHA256 b0fc07735b520002de03804b8948e0b597bc56551671d738d9e947fd446e1284
-MD5 ef3263b457d5917e68d3e1d72642bfb8 mammoth-1.0.ebuild 1331
-RMD160 928510b1f10053c061c71931b2fb4b74bc7c22e7 mammoth-1.0.ebuild 1331
-SHA256 b0fc07735b520002de03804b8948e0b597bc56551671d738d9e947fd446e1284 mammoth-1.0.ebuild 1331
 MISC ChangeLog 505 RMD160 3dcf795563bb2289ced1e149443bfd40489dfab6 SHA1 78742b43ecac3dc6af9eb36bf771b839a74b1c8d SHA256 b824b7cc06cc967569e17b2b1069bc68e2af392efee067eef4f57c18f9e8bd0c
-MD5 159a91910e7f17c4e7806e644843d170 ChangeLog 505
-RMD160 3dcf795563bb2289ced1e149443bfd40489dfab6 ChangeLog 505
-SHA256 b824b7cc06cc967569e17b2b1069bc68e2af392efee067eef4f57c18f9e8bd0c ChangeLog 505
 MISC metadata.xml 164 RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c SHA1 61a50baedfd041e663d6c2a41a28b57e22dbb6de SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f
-MD5 86813ca8050bc98ba326cb74e88150a5 metadata.xml 164
-RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c metadata.xml 164
-SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f metadata.xml 164
-MD5 9e7286c84db15c55e105c0c055d7c31c files/digest-mammoth-1.0 238
-RMD160 5e825fc810aebb51a230c14a6f8c11e9c81740f4 files/digest-mammoth-1.0 238
-SHA256 a5a779c2a6872f4dcd03544c48302031ea4e3b896bcfc0c8fbe6b8b3370fae56 files/digest-mammoth-1.0 238
------BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.7 (GNU/Linux)
-
-iD8DBQFHXQLGXVaO67S1rtsRAtkkAKDCI4uanTuHzlyie2q6Sb8O0n404wCgpiQC
-x0JU+S7t3f/ZhVnEugB1JTU=
-=BI8L
------END PGP SIGNATURE-----
diff --git a/sci-biology/mammoth/files/digest-mammoth-1.0 b/sci-biology/mammoth/files/digest-mammoth-1.0
deleted file mode 100644
index 3b87d317c321..000000000000
--- a/sci-biology/mammoth/files/digest-mammoth-1.0
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 241c7b3ba69974015ea82dad13b5a987 mammoth-1.0-src.tgz 319617
-RMD160 32b6c9c994ba804fab352cc9cfaa3358784f1052 mammoth-1.0-src.tgz 319617
-SHA256 7a21bc47db4a47cc5ebeeb4c46761a79eece0a802104a3d6189f388a03e59de2 mammoth-1.0-src.tgz 319617
diff --git a/sci-biology/meme/Manifest b/sci-biology/meme/Manifest
index c06b48eae2d8..4bf40f4f2573 100644
--- a/sci-biology/meme/Manifest
+++ b/sci-biology/meme/Manifest
@@ -1,35 +1,8 @@
 AUX meme-3.5.4-Makefile.am.patch 377 RMD160 a8d4551bcb53b66044ded24421cd2a17bf93b3ad SHA1 96530d5a58b8c01c99ae2b5463b7448758d7fb3d SHA256 ef3f0d8ccca728325d9f9b4f485e8cd4db2ced50fc975f8b66f3b76fcf17b5e8
-MD5 1340a30b4b010637181605a11e78a950 files/meme-3.5.4-Makefile.am.patch 377
-RMD160 a8d4551bcb53b66044ded24421cd2a17bf93b3ad files/meme-3.5.4-Makefile.am.patch 377
-SHA256 ef3f0d8ccca728325d9f9b4f485e8cd4db2ced50fc975f8b66f3b76fcf17b5e8 files/meme-3.5.4-Makefile.am.patch 377
 AUX meme-3.5.4-patch1.patch 7443 RMD160 6d72e74d6139d8c29bfcda9da750dc454f08ef0a SHA1 336c91ad5ecd44d49de0e940bb18315b62569a2b SHA256 306cee9c3c831494cf264ded84d248e5773c9a56d259a02e8da9c6dc31457f04
-MD5 651579784b229f2fa7f566c5c655f562 files/meme-3.5.4-patch1.patch 7443
-RMD160 6d72e74d6139d8c29bfcda9da750dc454f08ef0a files/meme-3.5.4-patch1.patch 7443
-SHA256 306cee9c3c831494cf264ded84d248e5773c9a56d259a02e8da9c6dc31457f04 files/meme-3.5.4-patch1.patch 7443
 AUX meme-3.5.4-patch2.patch 2074 RMD160 56520122dd1d35afa444414ea57199924e8492b5 SHA1 29edf295100721006aea8b76ff4c5bdfb9312020 SHA256 bf74f09bcd6c247f464f15b17e3a0e8f95149fdc5b92d8f17d06ede430d2d7be
-MD5 9489e7cf0052442d5d1413e9e26b5b65 files/meme-3.5.4-patch2.patch 2074
-RMD160 56520122dd1d35afa444414ea57199924e8492b5 files/meme-3.5.4-patch2.patch 2074
-SHA256 bf74f09bcd6c247f464f15b17e3a0e8f95149fdc5b92d8f17d06ede430d2d7be files/meme-3.5.4-patch2.patch 2074
 DIST meme_3.5.4.tar.gz 1045501 RMD160 063a804c18f07349e95f4aba2a3c97cb025ed2a8 SHA1 d780dba0b900f840a599cf69cfeba4eefd4856b4 SHA256 b753ee276bc5eafeab8ff310e6d938977da11f466d26cfd3ae9c0f0a7a91de86
 EBUILD meme-3.5.4-r1.ebuild 2828 RMD160 53c0031f0f8f02d92bb40e5014a4fdab42ad645a SHA1 2a1d3707b20e03980020662ae826789ab05524aa SHA256 dc252b0cf3cd0e450f5bcda22a6ccb620fa4f4084fad84d93343fbf7d4403a0a
-MD5 8dfda51f16c86842a4e7a2743a38afea meme-3.5.4-r1.ebuild 2828
-RMD160 53c0031f0f8f02d92bb40e5014a4fdab42ad645a meme-3.5.4-r1.ebuild 2828
-SHA256 dc252b0cf3cd0e450f5bcda22a6ccb620fa4f4084fad84d93343fbf7d4403a0a meme-3.5.4-r1.ebuild 2828
 EBUILD meme-3.5.4.ebuild 2522 RMD160 91306d472533051cbe7ccb08594a0c527be86d5d SHA1 ca5cc1df4a8fadd2456423231cba5e2168a4eef3 SHA256 1a2e88d01b7183d530d1796b144fc0e4de6f3f0b0faa138e5552ba9a65f9c188
-MD5 f2a6ac226bbcea335120135f8a490df8 meme-3.5.4.ebuild 2522
-RMD160 91306d472533051cbe7ccb08594a0c527be86d5d meme-3.5.4.ebuild 2522
-SHA256 1a2e88d01b7183d530d1796b144fc0e4de6f3f0b0faa138e5552ba9a65f9c188 meme-3.5.4.ebuild 2522
 MISC ChangeLog 1144 RMD160 46278047dbc246d69593f5d29a18cf740ec99e9e SHA1 591dfd0a775c78a777dbb121d66ac91a220db73b SHA256 aea3421944e9f852c886186f148f2b881478e74506bb7c5d5be5e338f2e48d32
-MD5 71db04e553d322efb611bb9520928e9a ChangeLog 1144
-RMD160 46278047dbc246d69593f5d29a18cf740ec99e9e ChangeLog 1144
-SHA256 aea3421944e9f852c886186f148f2b881478e74506bb7c5d5be5e338f2e48d32 ChangeLog 1144
 MISC metadata.xml 165 RMD160 b247a16b6552b292d1249ff4e8ea5060ad2c4372 SHA1 a9f91a3a303f4c85430e21eca09913e1c9426366 SHA256 560c375768c8e164d954d61924f110da785b4771012cb830963eaa267a319132
-MD5 aec0225cc3c4bc9490275e897849b449 metadata.xml 165
-RMD160 b247a16b6552b292d1249ff4e8ea5060ad2c4372 metadata.xml 165
-SHA256 560c375768c8e164d954d61924f110da785b4771012cb830963eaa267a319132 metadata.xml 165
-MD5 1eaad7de1310f43b70c0414c120687f6 files/digest-meme-3.5.4 235
-RMD160 ed97244306a01084ca6973c50c49726724212632 files/digest-meme-3.5.4 235
-SHA256 98b3e51f5544aa86ee4cfed70da0b3d9068cd677c3744e750b4f0bee2be5be8b files/digest-meme-3.5.4 235
-MD5 1eaad7de1310f43b70c0414c120687f6 files/digest-meme-3.5.4-r1 235
-RMD160 ed97244306a01084ca6973c50c49726724212632 files/digest-meme-3.5.4-r1 235
-SHA256 98b3e51f5544aa86ee4cfed70da0b3d9068cd677c3744e750b4f0bee2be5be8b files/digest-meme-3.5.4-r1 235
diff --git a/sci-biology/meme/files/digest-meme-3.5.4 b/sci-biology/meme/files/digest-meme-3.5.4
deleted file mode 100644
index 01fad3060d81..000000000000
--- a/sci-biology/meme/files/digest-meme-3.5.4
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 9a8b3d21c6094616cc7b9b424352c697 meme_3.5.4.tar.gz 1045501
-RMD160 063a804c18f07349e95f4aba2a3c97cb025ed2a8 meme_3.5.4.tar.gz 1045501
-SHA256 b753ee276bc5eafeab8ff310e6d938977da11f466d26cfd3ae9c0f0a7a91de86 meme_3.5.4.tar.gz 1045501
diff --git a/sci-biology/meme/files/digest-meme-3.5.4-r1 b/sci-biology/meme/files/digest-meme-3.5.4-r1
deleted file mode 100644
index 01fad3060d81..000000000000
--- a/sci-biology/meme/files/digest-meme-3.5.4-r1
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 9a8b3d21c6094616cc7b9b424352c697 meme_3.5.4.tar.gz 1045501
-RMD160 063a804c18f07349e95f4aba2a3c97cb025ed2a8 meme_3.5.4.tar.gz 1045501
-SHA256 b753ee276bc5eafeab8ff310e6d938977da11f466d26cfd3ae9c0f0a7a91de86 meme_3.5.4.tar.gz 1045501
diff --git a/sci-biology/mrbayes/Manifest b/sci-biology/mrbayes/Manifest
index ef4d8e35ca5a..61f977e5d70d 100644
--- a/sci-biology/mrbayes/Manifest
+++ b/sci-biology/mrbayes/Manifest
@@ -1,30 +1,5 @@
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
-
 AUX mb_readline_312.patch 1108 RMD160 5901513567ef2198b4c9c1baeb1ecc295af3eee8 SHA1 c5526cf58fe15cb22c401de19de7056a66c37414 SHA256 6d7566cbe59eee9881b41a21ea561fd610816df768bb8fda42ef4435c84f5f22
-MD5 57580efc7486284feeda8665c1c45d4e files/mb_readline_312.patch 1108
-RMD160 5901513567ef2198b4c9c1baeb1ecc295af3eee8 files/mb_readline_312.patch 1108
-SHA256 6d7566cbe59eee9881b41a21ea561fd610816df768bb8fda42ef4435c84f5f22 files/mb_readline_312.patch 1108
 DIST mrbayes-3.1.2.tar.gz 545968 RMD160 b90b9406f34806bcd18bc49dc998b7ed444e93c3 SHA1 db73f53361688e1451ec155ccbdd130c3f889817 SHA256 c60253de1980c9f0a0eb684fffe7ba428fda7c39a3edcb6acf384b5e1443f2f4
 EBUILD mrbayes-3.1.2.ebuild 1143 RMD160 c4ec01b9b21860ac2da484b629c9dca4078f3c70 SHA1 b5201902fd55d234a1681a24b2a480d74f077b43 SHA256 80cbc049384e10d0e1eaece922f92285d7b9ae65622f4052ad87c9635d13c9fb
-MD5 b7d8ee0e9f0aea8dce85c3752ba987b5 mrbayes-3.1.2.ebuild 1143
-RMD160 c4ec01b9b21860ac2da484b629c9dca4078f3c70 mrbayes-3.1.2.ebuild 1143
-SHA256 80cbc049384e10d0e1eaece922f92285d7b9ae65622f4052ad87c9635d13c9fb mrbayes-3.1.2.ebuild 1143
 MISC ChangeLog 2448 RMD160 7b0fc3a4455b4df61c9801ec712cba5a0ea87fec SHA1 07d47f4f004e0cd3b66bf7d43ef4fa98d35d0651 SHA256 201f5a285cb608e0d8b36e3380c31b3c826f59714b4a9e5f45c7c4fe1d49ab05
-MD5 23d18fcb4cce25c65758d04a406486f5 ChangeLog 2448
-RMD160 7b0fc3a4455b4df61c9801ec712cba5a0ea87fec ChangeLog 2448
-SHA256 201f5a285cb608e0d8b36e3380c31b3c826f59714b4a9e5f45c7c4fe1d49ab05 ChangeLog 2448
 MISC metadata.xml 730 RMD160 46eda6e69c53a0e301343cfc645c343c5aa9fdd6 SHA1 06e33f8fa877635c7e771e74e3edeb8cba146fb3 SHA256 fe9b9273c53a7c502d6688d63557fe603f63a47c8ff17355b9db7cdc0b78f446
-MD5 fe3ba34f23a65b9df157e14ae85b1310 metadata.xml 730
-RMD160 46eda6e69c53a0e301343cfc645c343c5aa9fdd6 metadata.xml 730
-SHA256 fe9b9273c53a7c502d6688d63557fe603f63a47c8ff17355b9db7cdc0b78f446 metadata.xml 730
-MD5 7a779abc67948fa9bd32f81f9cd3ece5 files/digest-mrbayes-3.1.2 241
-RMD160 f2a15583dc160c5445d30604e38da5f451be0886 files/digest-mrbayes-3.1.2 241
-SHA256 8b97ef1f24e6277b4ea0784252a6422e453a482e4f6d2b1d4e375ef46a9f35a3 files/digest-mrbayes-3.1.2 241
------BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.1 (GNU/Linux)
-
-iD8DBQFGBdrW5mJXAu5GbtIRAk6SAJ9GtJN4VRx9W998x72/vxsXJqdRAwCfaVU1
-qeXENeAJvjUdfbOupf5HzS8=
-=2nBU
------END PGP SIGNATURE-----
diff --git a/sci-biology/mrbayes/files/digest-mrbayes-3.1.2 b/sci-biology/mrbayes/files/digest-mrbayes-3.1.2
deleted file mode 100644
index 44a987dc4bd3..000000000000
--- a/sci-biology/mrbayes/files/digest-mrbayes-3.1.2
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 942e4e0a90fa23481bb1f2e0fa0e0d66 mrbayes-3.1.2.tar.gz 545968
-RMD160 b90b9406f34806bcd18bc49dc998b7ed444e93c3 mrbayes-3.1.2.tar.gz 545968
-SHA256 c60253de1980c9f0a0eb684fffe7ba428fda7c39a3edcb6acf384b5e1443f2f4 mrbayes-3.1.2.tar.gz 545968
diff --git a/sci-biology/muscle/Manifest b/sci-biology/muscle/Manifest
index 05ff8bdc8d36..a3f40f39eb52 100644
--- a/sci-biology/muscle/Manifest
+++ b/sci-biology/muscle/Manifest
@@ -1,16 +1,4 @@
 DIST muscle3.6_src.tar.gz 185267 RMD160 4afda92b982ec2b05853a582479c61a7d8814f51 SHA1 e8a4998ee10a8f067fd1ba63966e32e69da62d36 SHA256 32b818a51f421e1d687f513dc31374a330470950151a5e7df961e64781699431
 EBUILD muscle-3.6.ebuild 825 RMD160 5c2e68629d7197f7e32cc4508a4a463e908fde9d SHA1 2e5dfe63244ee714fdfbd927672fc8d7dafdae6b SHA256 d855755012cbf3ad81a67cc1583bf58e080b35c2f78f756b7cc5a4c2b41470bd
-MD5 767dcfb75caf33bb54df389553a4868a muscle-3.6.ebuild 825
-RMD160 5c2e68629d7197f7e32cc4508a4a463e908fde9d muscle-3.6.ebuild 825
-SHA256 d855755012cbf3ad81a67cc1583bf58e080b35c2f78f756b7cc5a4c2b41470bd muscle-3.6.ebuild 825
 MISC ChangeLog 1195 RMD160 b9049243629ee6a15da67f525d583f280911399d SHA1 5771a73869b6e67b445668953e5b3648a1d04711 SHA256 e01c55184e9c998d20a678ef71c968648a6350f7382560beb4f4ea32b713357a
-MD5 8ca4b045a7d0adb726939aeed13284b5 ChangeLog 1195
-RMD160 b9049243629ee6a15da67f525d583f280911399d ChangeLog 1195
-SHA256 e01c55184e9c998d20a678ef71c968648a6350f7382560beb4f4ea32b713357a ChangeLog 1195
 MISC metadata.xml 164 RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c SHA1 61a50baedfd041e663d6c2a41a28b57e22dbb6de SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f
-MD5 86813ca8050bc98ba326cb74e88150a5 metadata.xml 164
-RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c metadata.xml 164
-SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f metadata.xml 164
-MD5 2ce7fc1feec78dd7428b1bfb6dca6f48 files/digest-muscle-3.6 241
-RMD160 00cdfc0a67940e555cae9b2917a3e59e4a880f44 files/digest-muscle-3.6 241
-SHA256 ff5d1ffa1cd22ba1ee71b8af23f4f92d25ae80f8fa88bf0ed303d0d8c3799cbd files/digest-muscle-3.6 241
diff --git a/sci-biology/muscle/files/digest-muscle-3.6 b/sci-biology/muscle/files/digest-muscle-3.6
deleted file mode 100644
index 343f62ae80b5..000000000000
--- a/sci-biology/muscle/files/digest-muscle-3.6
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 e721d0859da9feec3cedeb42dcee9f59 muscle3.6_src.tar.gz 185267
-RMD160 4afda92b982ec2b05853a582479c61a7d8814f51 muscle3.6_src.tar.gz 185267
-SHA256 32b818a51f421e1d687f513dc31374a330470950151a5e7df961e64781699431 muscle3.6_src.tar.gz 185267
diff --git a/sci-biology/ncbi-tools/Manifest b/sci-biology/ncbi-tools/Manifest
index ec43295ea776..d95280b0b6f0 100644
--- a/sci-biology/ncbi-tools/Manifest
+++ b/sci-biology/ncbi-tools/Manifest
@@ -1,23 +1,8 @@
 AUX 21ncbi-r1 232 RMD160 ba65fe937c9a29f4cc185d99db18522343bbb28b SHA1 5674f379f7a70e71394bca272fedd72a1622a7da SHA256 55d5d53c177200d4a9369102d3e2d8ef232f09dd8559aab6c6e4d2173e8bb411
-MD5 a5f54430f6f7422d75320e91068cae0b files/21ncbi-r1 232
-RMD160 ba65fe937c9a29f4cc185d99db18522343bbb28b files/21ncbi-r1 232
-SHA256 55d5d53c177200d4a9369102d3e2d8ef232f09dd8559aab6c6e4d2173e8bb411 files/21ncbi-r1 232
 AUX ncbi-tools-asn2all.patch 1190 RMD160 3aaccc677bd8b9bad6c6424f5080c71cdac553d7 SHA1 ae22c77cfcd7d416a89ea3fe1e0331264473669d SHA256 e2fd71fdaa07b9e1c9cf646b2d3aa02c2ec822d41dcd45cadfced4164f458bed
-MD5 b89cb833887b3e3efda83d074b4b8edb files/ncbi-tools-asn2all.patch 1190
-RMD160 3aaccc677bd8b9bad6c6424f5080c71cdac553d7 files/ncbi-tools-asn2all.patch 1190
-SHA256 e2fd71fdaa07b9e1c9cf646b2d3aa02c2ec822d41dcd45cadfced4164f458bed files/ncbi-tools-asn2all.patch 1190
 AUX ncbi-tools-extra_vib.patch 1393 RMD160 05e2dcf17b6af9475625eb0aa0be6bc96071a923 SHA1 bb92aeada6786d4573f9ad98e3d50b4a4201ba10 SHA256 b7639937d59c8bd636c6b02a65a4469d188645b9a10fffd0c8680fb861a7a8e1
-MD5 81e003b746faf22d3f1b1df37ffdcf41 files/ncbi-tools-extra_vib.patch 1393
-RMD160 05e2dcf17b6af9475625eb0aa0be6bc96071a923 files/ncbi-tools-extra_vib.patch 1393
-SHA256 b7639937d59c8bd636c6b02a65a4469d188645b9a10fffd0c8680fb861a7a8e1 files/ncbi-tools-extra_vib.patch 1393
 AUX ncbi-tools-lop.patch 701 RMD160 1b9d8d196b1d4f27b090e616c9ac03cb9b4e6a09 SHA1 be28d340be72b9840342b407d95dc2a558e39de9 SHA256 9e5c57e944d23920f196f36912933653c236998729f69f28be8b55964865dfbc
-MD5 6b62beda180ee6d7d4d4a52507acc3ff files/ncbi-tools-lop.patch 701
-RMD160 1b9d8d196b1d4f27b090e616c9ac03cb9b4e6a09 files/ncbi-tools-lop.patch 701
-SHA256 9e5c57e944d23920f196f36912933653c236998729f69f28be8b55964865dfbc files/ncbi-tools-lop.patch 701
 AUX ncbirc 33 RMD160 3bfa36288b608b4e29252ad1972bb8c06cded3e1 SHA1 eb14976d464f4fa0e14085c8dd58886b0c684a56 SHA256 8687909c83658049cbad656b6d99c8e6143365286e2fa981fbdddc87b178ab8e
-MD5 23986a001c85eb8c2c319aacfa9cb40c files/ncbirc 33
-RMD160 3bfa36288b608b4e29252ad1972bb8c06cded3e1 files/ncbirc 33
-SHA256 8687909c83658049cbad656b6d99c8e6143365286e2fa981fbdddc87b178ab8e files/ncbirc 33
 DIST mpiblast-20060625.tar.gz 165096 RMD160 22a9bda3ea63076c1411f8c361c7bbf84213e215 SHA1 e0acdde2770973b752396a6ba1a99b47ea4ddcde SHA256 49eb549196b306d6c152b12522ff2ca08163f4d3a2582118790c88c327c15097
 DIST ncbi-tools-20050605.tar.gz 14458684 RMD160 82d3c008e9b1741e8ac286d66c1ad68693663590 SHA1 7e1ddd3f049df7c906f2681453c5e5a7b12622d8 SHA256 e0108faeb84da35da82acaa925c084fbeb455c5e571cdcaae5b02c612df46209
 DIST ncbi-tools-20060507.tar.gz 15396356 RMD160 56114d25ace0338d1ef5c8c2a3cc36ce740a12e3 SHA1 64269236b09fba29d4afe0cd8a3ac6a47fee5218 SHA256 b3cac971d552b2ad86ee7d82e77e6a425b98b33a7b6f1c77062aff133e34d129
@@ -25,38 +10,8 @@ DIST ncbi-tools-20061015.tar.gz 15772715 RMD160 034124b92d4320be31b2bacbb0966270
 DIST ncbi-tools-20070826.tar.gz 17076175 RMD160 00daadd503bf729c15ada0008e305492a076fe15 SHA1 5e61f4f73ef52d145d0df86bb00f03f2db833ee9 SHA256 58be3bb76c4a112217c414fd5d05de58a893cfd6ace3856629616a97a61ee4c8
 DIST ncbi-tools-sdk-doc.tar.bz2 263568 RMD160 f9c4d610c2535ec2b4afae6ecef065fd5746910b SHA1 6fd259b1fc75684db43bd817fc4720e92f56e81c SHA256 352ec02e527f24d03bafb7d40b31c98e0a6f931bed34c4933c5f7153b8034cb2
 EBUILD ncbi-tools-20050605.ebuild 5749 RMD160 b44f50468496fd8091515b899d9bc5971db646a3 SHA1 673c0f66d0d2a46b86c5dbcfd2c74d751f531450 SHA256 ff797954513ff7e293ab3519642e0864b781233a7bf15fe5eb98345c8a3c02f5
-MD5 4dd67ba36446b746d08d6a03660409a8 ncbi-tools-20050605.ebuild 5749
-RMD160 b44f50468496fd8091515b899d9bc5971db646a3 ncbi-tools-20050605.ebuild 5749
-SHA256 ff797954513ff7e293ab3519642e0864b781233a7bf15fe5eb98345c8a3c02f5 ncbi-tools-20050605.ebuild 5749
 EBUILD ncbi-tools-20060507.ebuild 6406 RMD160 0d52953dc8cff30b92a68fe9a726f19297f7d72d SHA1 4101fa84b7ab60c58ffb42f0b05bd895f5ab6937 SHA256 2653da742470eb3cc79541cdd745af2f858bbd0356ce141b88cc3e1dd07ad9a6
-MD5 2f571f2df62cf1f15cee816265ddc847 ncbi-tools-20060507.ebuild 6406
-RMD160 0d52953dc8cff30b92a68fe9a726f19297f7d72d ncbi-tools-20060507.ebuild 6406
-SHA256 2653da742470eb3cc79541cdd745af2f858bbd0356ce141b88cc3e1dd07ad9a6 ncbi-tools-20060507.ebuild 6406
 EBUILD ncbi-tools-20061015-r1.ebuild 6495 RMD160 24ab84b6a4bce25a0571c78a5489d5725e81a01b SHA1 e409498fc64031e0208fb5299d377217670a0759 SHA256 135d19e95452b5662a9751f4101ef17a66a618c3031894bb2aa8f761d64a85ad
-MD5 b87146ee80dd26bf9d65078fafb9bedb ncbi-tools-20061015-r1.ebuild 6495
-RMD160 24ab84b6a4bce25a0571c78a5489d5725e81a01b ncbi-tools-20061015-r1.ebuild 6495
-SHA256 135d19e95452b5662a9751f4101ef17a66a618c3031894bb2aa8f761d64a85ad ncbi-tools-20061015-r1.ebuild 6495
 EBUILD ncbi-tools-20070826.ebuild 6692 RMD160 1fbe1feaabd9eba5f39d1cb60c49c1c2c024cfde SHA1 a137efca67772099706b721b4ccf05245bf7afc3 SHA256 fac57f3b92bc6ac9450cbb8ca4c6bb6865d29ced450656e8429a82d8609c09c6
-MD5 d4286b799fd80ed92e8c293c8df0c9c3 ncbi-tools-20070826.ebuild 6692
-RMD160 1fbe1feaabd9eba5f39d1cb60c49c1c2c024cfde ncbi-tools-20070826.ebuild 6692
-SHA256 fac57f3b92bc6ac9450cbb8ca4c6bb6865d29ced450656e8429a82d8609c09c6 ncbi-tools-20070826.ebuild 6692
 MISC ChangeLog 12732 RMD160 27e3b68138cc7bb0eda43e7633568a6db99f358d SHA1 facd884a3a8afd284e2fe68e583ed9da0427d4a0 SHA256 c8c38f788af227ca1190f7757eafa56b921e285e20889b143bc51cc5ec5a3ac3
-MD5 9a08cacd1476e1c8980c847dcf4f757c ChangeLog 12732
-RMD160 27e3b68138cc7bb0eda43e7633568a6db99f358d ChangeLog 12732
-SHA256 c8c38f788af227ca1190f7757eafa56b921e285e20889b143bc51cc5ec5a3ac3 ChangeLog 12732
 MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
-MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
-RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
-SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
-MD5 b1b126e6be171d8c955e20e09d38ef31 files/digest-ncbi-tools-20050605 524
-RMD160 bc4d3664b8227f3749cebeb04e87df32cf574b41 files/digest-ncbi-tools-20050605 524
-SHA256 8b4847f987b8741efff3b3db0b1d2856f15c53291362ab0bfba1af21263de19c files/digest-ncbi-tools-20050605 524
-MD5 96f59d6f4dcd072b2744878ce377b23d files/digest-ncbi-tools-20060507 777
-RMD160 d0a656e48f738e1a30061121a7fecf6e5b7ee841 files/digest-ncbi-tools-20060507 777
-SHA256 d20530e140a48cab2fc12df5a0bf0957e956a6ea35a07b5b5ed42a43466ad4d7 files/digest-ncbi-tools-20060507 777
-MD5 4a2b24a25719d45c6a999619053cb37c files/digest-ncbi-tools-20061015-r1 777
-RMD160 82eefb533a71585a5526c9762f9b389341863252 files/digest-ncbi-tools-20061015-r1 777
-SHA256 8dcb338c684c40627c2cfd3a425654b91b29f76804b3c14dde7e4bc4857e3031 files/digest-ncbi-tools-20061015-r1 777
-MD5 e367c9b53f2aae21c7430ab487ba3afc files/digest-ncbi-tools-20070826 524
-RMD160 7f17aa60015d7c5d4b1ba8f668c8b8d7d945f81f files/digest-ncbi-tools-20070826 524
-SHA256 29693de03dce7550265261f97e3e634ab8c49c25fead9e9097c40159c339a33c files/digest-ncbi-tools-20070826 524
diff --git a/sci-biology/ncbi-tools/files/digest-ncbi-tools-20050605 b/sci-biology/ncbi-tools/files/digest-ncbi-tools-20050605
deleted file mode 100644
index 04f3505b48b3..000000000000
--- a/sci-biology/ncbi-tools/files/digest-ncbi-tools-20050605
+++ /dev/null
@@ -1,6 +0,0 @@
-MD5 61864b4999390eb69e60734b3b02c149 ncbi-tools-20050605.tar.gz 14458684
-RMD160 82d3c008e9b1741e8ac286d66c1ad68693663590 ncbi-tools-20050605.tar.gz 14458684
-SHA256 e0108faeb84da35da82acaa925c084fbeb455c5e571cdcaae5b02c612df46209 ncbi-tools-20050605.tar.gz 14458684
-MD5 c0860f787d95623b72fba58dbf1b60c5 ncbi-tools-sdk-doc.tar.bz2 263568
-RMD160 f9c4d610c2535ec2b4afae6ecef065fd5746910b ncbi-tools-sdk-doc.tar.bz2 263568
-SHA256 352ec02e527f24d03bafb7d40b31c98e0a6f931bed34c4933c5f7153b8034cb2 ncbi-tools-sdk-doc.tar.bz2 263568
diff --git a/sci-biology/ncbi-tools/files/digest-ncbi-tools-20060507 b/sci-biology/ncbi-tools/files/digest-ncbi-tools-20060507
deleted file mode 100644
index f3931295dbf1..000000000000
--- a/sci-biology/ncbi-tools/files/digest-ncbi-tools-20060507
+++ /dev/null
@@ -1,9 +0,0 @@
-MD5 14ee6d612d0d86e0dee7eb5f0c38839f mpiblast-20060625.tar.gz 165096
-RMD160 22a9bda3ea63076c1411f8c361c7bbf84213e215 mpiblast-20060625.tar.gz 165096
-SHA256 49eb549196b306d6c152b12522ff2ca08163f4d3a2582118790c88c327c15097 mpiblast-20060625.tar.gz 165096
-MD5 1c00462385fbf382c99ff65f34c0d09a ncbi-tools-20060507.tar.gz 15396356
-RMD160 56114d25ace0338d1ef5c8c2a3cc36ce740a12e3 ncbi-tools-20060507.tar.gz 15396356
-SHA256 b3cac971d552b2ad86ee7d82e77e6a425b98b33a7b6f1c77062aff133e34d129 ncbi-tools-20060507.tar.gz 15396356
-MD5 c0860f787d95623b72fba58dbf1b60c5 ncbi-tools-sdk-doc.tar.bz2 263568
-RMD160 f9c4d610c2535ec2b4afae6ecef065fd5746910b ncbi-tools-sdk-doc.tar.bz2 263568
-SHA256 352ec02e527f24d03bafb7d40b31c98e0a6f931bed34c4933c5f7153b8034cb2 ncbi-tools-sdk-doc.tar.bz2 263568
diff --git a/sci-biology/ncbi-tools/files/digest-ncbi-tools-20061015-r1 b/sci-biology/ncbi-tools/files/digest-ncbi-tools-20061015-r1
deleted file mode 100644
index 21bbf17addbb..000000000000
--- a/sci-biology/ncbi-tools/files/digest-ncbi-tools-20061015-r1
+++ /dev/null
@@ -1,9 +0,0 @@
-MD5 14ee6d612d0d86e0dee7eb5f0c38839f mpiblast-20060625.tar.gz 165096
-RMD160 22a9bda3ea63076c1411f8c361c7bbf84213e215 mpiblast-20060625.tar.gz 165096
-SHA256 49eb549196b306d6c152b12522ff2ca08163f4d3a2582118790c88c327c15097 mpiblast-20060625.tar.gz 165096
-MD5 8eca84753fd7a1d39bab256a4944f65e ncbi-tools-20061015.tar.gz 15772715
-RMD160 034124b92d4320be31b2bacbb0966270cbfa63b3 ncbi-tools-20061015.tar.gz 15772715
-SHA256 0833f4b4f0389f75cdc0754329b3b8c1420c5b9abd7f3d8e352b4c134b3446de ncbi-tools-20061015.tar.gz 15772715
-MD5 c0860f787d95623b72fba58dbf1b60c5 ncbi-tools-sdk-doc.tar.bz2 263568
-RMD160 f9c4d610c2535ec2b4afae6ecef065fd5746910b ncbi-tools-sdk-doc.tar.bz2 263568
-SHA256 352ec02e527f24d03bafb7d40b31c98e0a6f931bed34c4933c5f7153b8034cb2 ncbi-tools-sdk-doc.tar.bz2 263568
diff --git a/sci-biology/ncbi-tools/files/digest-ncbi-tools-20070826 b/sci-biology/ncbi-tools/files/digest-ncbi-tools-20070826
deleted file mode 100644
index cc637bdddb28..000000000000
--- a/sci-biology/ncbi-tools/files/digest-ncbi-tools-20070826
+++ /dev/null
@@ -1,6 +0,0 @@
-MD5 c17f7b08c12823e4320661894110dcb1 ncbi-tools-20070826.tar.gz 17076175
-RMD160 00daadd503bf729c15ada0008e305492a076fe15 ncbi-tools-20070826.tar.gz 17076175
-SHA256 58be3bb76c4a112217c414fd5d05de58a893cfd6ace3856629616a97a61ee4c8 ncbi-tools-20070826.tar.gz 17076175
-MD5 c0860f787d95623b72fba58dbf1b60c5 ncbi-tools-sdk-doc.tar.bz2 263568
-RMD160 f9c4d610c2535ec2b4afae6ecef065fd5746910b ncbi-tools-sdk-doc.tar.bz2 263568
-SHA256 352ec02e527f24d03bafb7d40b31c98e0a6f931bed34c4933c5f7153b8034cb2 ncbi-tools-sdk-doc.tar.bz2 263568
diff --git a/sci-biology/njplot/Manifest b/sci-biology/njplot/Manifest
index 047c711f107a..2ff7895d6259 100644
--- a/sci-biology/njplot/Manifest
+++ b/sci-biology/njplot/Manifest
@@ -1,16 +1,4 @@
 DIST njplot-20050109.tar.bz2 36953 RMD160 5240b23c3b52564e28b77ddc4eca84b255facff0 SHA1 aac1677c6c8519ebadf4ea0015d29cbc6bcac647 SHA256 442e32cd69a34a5799db524c73765fe3b474030a1ca8b7a58aa882df515b2a41
 EBUILD njplot-20050109.ebuild 855 RMD160 5f5b4f3824fc7de026926ce7bc8418d624a8f8f2 SHA1 df26632ee59805154aca9f20a02a6acf31b39f50 SHA256 e744db77f803c37956e0c976097c6ddc7e31e67ff6c8bc15e999ebab9fcc8fee
-MD5 893782aae32d187f7e655a935e74b570 njplot-20050109.ebuild 855
-RMD160 5f5b4f3824fc7de026926ce7bc8418d624a8f8f2 njplot-20050109.ebuild 855
-SHA256 e744db77f803c37956e0c976097c6ddc7e31e67ff6c8bc15e999ebab9fcc8fee njplot-20050109.ebuild 855
 MISC ChangeLog 1546 RMD160 961c23d2eb6644b0ba6faafe5da381a4227f0dec SHA1 5e20657d2ec7439aadaa7206df3dff96dec152d7 SHA256 228ec086b07d49150ffd277dbc3d379d37399d0afdab520ebbcf06814c012c92
-MD5 1b80277d1819e4b39cd3a604ecb9bf67 ChangeLog 1546
-RMD160 961c23d2eb6644b0ba6faafe5da381a4227f0dec ChangeLog 1546
-SHA256 228ec086b07d49150ffd277dbc3d379d37399d0afdab520ebbcf06814c012c92 ChangeLog 1546
 MISC metadata.xml 520 RMD160 7814fda582b867cb43801a31deea8a5c6302347f SHA1 16d773ee635c1dbe63e8adf04df5e359d68bcf50 SHA256 f220a9d97238806c27477f5343f2c399dc07593c4cf9e01cacd075037cdd94ea
-MD5 93c0136611ed33551cb275fcec3fd1fc metadata.xml 520
-RMD160 7814fda582b867cb43801a31deea8a5c6302347f metadata.xml 520
-SHA256 f220a9d97238806c27477f5343f2c399dc07593c4cf9e01cacd075037cdd94ea metadata.xml 520
-MD5 741d3314fa78a3cb1deb0d2c1ecab31d files/digest-njplot-20050109 247
-RMD160 b17cec7c031c5f3f2822f8ef94328e0b6d28a19f files/digest-njplot-20050109 247
-SHA256 c00ccfa96f952dab2415bec1d0037b51552335bae31915d15e3f49d3f1ea96ef files/digest-njplot-20050109 247
diff --git a/sci-biology/njplot/files/digest-njplot-20050109 b/sci-biology/njplot/files/digest-njplot-20050109
deleted file mode 100644
index 16c82c63b777..000000000000
--- a/sci-biology/njplot/files/digest-njplot-20050109
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 90e5a9285c976929aaa8a8b04d73d806 njplot-20050109.tar.bz2 36953
-RMD160 5240b23c3b52564e28b77ddc4eca84b255facff0 njplot-20050109.tar.bz2 36953
-SHA256 442e32cd69a34a5799db524c73765fe3b474030a1ca8b7a58aa882df515b2a41 njplot-20050109.tar.bz2 36953
diff --git a/sci-biology/paml/Manifest b/sci-biology/paml/Manifest
index a15b4d19f0b7..36982ee2d80b 100644
--- a/sci-biology/paml/Manifest
+++ b/sci-biology/paml/Manifest
@@ -1,24 +1,6 @@
 DIST paml3.15.tar.gz 2364043 RMD160 b38655012237f9237a1c9474746f504804395045 SHA1 0628b3557a20ba8a9a173c39fec2093f056e1050 SHA256 f698b1d57b514e5e06e746899eae1245d098e96881e2a31c9b8fc956beb4f62a
 DIST paml4a.tar.gz 2377543 RMD160 5be2b6e82f0abc52e1e4251a0b8728e4cece684b SHA1 7f1d8b40f27d735385735cc1652b6bf5a7aa1c06 SHA256 436968adfad51c0b9f28a5bc1196a5e123005b8e9c6df0c4200d791b7ed90f4e
 EBUILD paml-3.15.ebuild 799 RMD160 1590abccf695a390f4ebdd875f88bea662fcaba1 SHA1 cda700a52156d4441a561078aa8c6de216d14c61 SHA256 880d7c220b0ae9f1f10f20d5a1cc7a549a29d7d918165f0a0a93d6ad4a4884f7
-MD5 98d7cd007931241c55ba8ec8a6213eab paml-3.15.ebuild 799
-RMD160 1590abccf695a390f4ebdd875f88bea662fcaba1 paml-3.15.ebuild 799
-SHA256 880d7c220b0ae9f1f10f20d5a1cc7a549a29d7d918165f0a0a93d6ad4a4884f7 paml-3.15.ebuild 799
 EBUILD paml-4a.ebuild 1091 RMD160 f9ce007b3ff4c1aeb80ff23b27b837db0954742b SHA1 ced1e66b0ed5e82f06a4d89f7b351d9e895ee830 SHA256 dcfbaafe1e62c521e91c32413811e75b60078ba167957b066537c6177e0366ae
-MD5 44cc9d8748dc09f89a1621e99345fb4a paml-4a.ebuild 1091
-RMD160 f9ce007b3ff4c1aeb80ff23b27b837db0954742b paml-4a.ebuild 1091
-SHA256 dcfbaafe1e62c521e91c32413811e75b60078ba167957b066537c6177e0366ae paml-4a.ebuild 1091
 MISC ChangeLog 513 RMD160 069df8f31d5ad77b6ad4b497088478fecadb836d SHA1 60af739cff8e1edcce3b4ec0074dd089d64285be SHA256 5156d6a6e9ccb09c7d29720f0d1284040c42b54d0deec78b505ec107265d9b40
-MD5 221fca76ca6c4ad6e3e49718875ff465 ChangeLog 513
-RMD160 069df8f31d5ad77b6ad4b497088478fecadb836d ChangeLog 513
-SHA256 5156d6a6e9ccb09c7d29720f0d1284040c42b54d0deec78b505ec107265d9b40 ChangeLog 513
 MISC metadata.xml 164 RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c SHA1 61a50baedfd041e663d6c2a41a28b57e22dbb6de SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f
-MD5 86813ca8050bc98ba326cb74e88150a5 metadata.xml 164
-RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c metadata.xml 164
-SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f metadata.xml 164
-MD5 3537e34bb55e124c01119c5d6ee26014 files/digest-paml-3.15 229
-RMD160 773e09e87f3dc63be2b6e0f3365516145dd5d93f files/digest-paml-3.15 229
-SHA256 03086c4e10b192c5661596a8931edc6053de7945a179c154401dfa291a374253 files/digest-paml-3.15 229
-MD5 2229f913749aede88f47a3e17cf12ec1 files/digest-paml-4a 223
-RMD160 2328c52f977ebe238af4caa0b1b0498eccd5be63 files/digest-paml-4a 223
-SHA256 a5840580f643c1fa79db0c736551f25f4bb59d2d0dc4423b2744c84d31f27d4c files/digest-paml-4a 223
diff --git a/sci-biology/paml/files/digest-paml-3.15 b/sci-biology/paml/files/digest-paml-3.15
deleted file mode 100644
index b93b6587b637..000000000000
--- a/sci-biology/paml/files/digest-paml-3.15
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 c54ba7e15a66b57dc1140feea22e5695 paml3.15.tar.gz 2364043
-RMD160 b38655012237f9237a1c9474746f504804395045 paml3.15.tar.gz 2364043
-SHA256 f698b1d57b514e5e06e746899eae1245d098e96881e2a31c9b8fc956beb4f62a paml3.15.tar.gz 2364043
diff --git a/sci-biology/paml/files/digest-paml-4a b/sci-biology/paml/files/digest-paml-4a
deleted file mode 100644
index dd55c75cab35..000000000000
--- a/sci-biology/paml/files/digest-paml-4a
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 3cbe2e2ef633398e66443d08ccf16322 paml4a.tar.gz 2377543
-RMD160 5be2b6e82f0abc52e1e4251a0b8728e4cece684b paml4a.tar.gz 2377543
-SHA256 436968adfad51c0b9f28a5bc1196a5e123005b8e9c6df0c4200d791b7ed90f4e paml4a.tar.gz 2377543
diff --git a/sci-biology/phylip/Manifest b/sci-biology/phylip/Manifest
index 03fbf678b809..5075c693aa4c 100644
--- a/sci-biology/phylip/Manifest
+++ b/sci-biology/phylip/Manifest
@@ -1,36 +1,9 @@
 AUX README.Gentoo 643 RMD160 7777b1b507126f9d7ac01a0fc39e4eceac2e0381 SHA1 431f528545f949ec8687175808bbdabcfbd8c60e SHA256 d8a737f2ca6e0366fcebb96fbc9e12200b6402fea4c4f71696f4d9175980dfbd
-MD5 862f7fb5e44d3c8fb2edef9dc6290770 files/README.Gentoo 643
-RMD160 7777b1b507126f9d7ac01a0fc39e4eceac2e0381 files/README.Gentoo 643
-SHA256 d8a737f2ca6e0366fcebb96fbc9e12200b6402fea4c4f71696f4d9175980dfbd files/README.Gentoo 643
 DIST phylip-3.65.tar.gz 1036976 RMD160 f47ba1bad6ec47e954ff16703c84fbe47e5c3f54 SHA1 6b8a0aaa374a5d6a35b2ab2eaefe3fd392318336 SHA256 8f8ab66a58dbe1fdf0b615c13b6d358d6c49195fbaeaabc6190253e895c0d528
 DIST phylip-3.66.tar.gz 1149878 RMD160 f6903257199cc1063ce557b32fb34b72ba170541 SHA1 fe618704ef46883eadddae7788db378f3863f510 SHA256 0fc6971f8f852191a30f8fa0b1f7bcb67e976f90aa2a01f9e97b7a07e06a2464
 DIST phylip-3.67.tar.gz 1467526 RMD160 5636707b2585077a793c71fa81f255dfd8708100 SHA1 7c2ef697250d7d78e2d0672af60190129ba10161 SHA256 089f31c0519b1af162628c02d4ff78570b42cd261f39b87c6406733f2f759b5d
 EBUILD phylip-3.65-r1.ebuild 1453 RMD160 0cafcc633077df8497e8cf5059183793037b11c0 SHA1 1b35f838f95d27b0aa0656f1e68f8bcdeed774f2 SHA256 410dc2a17c5fb2aea2651399617964b233e1602f7b5060795bbc71627e6ff8e9
-MD5 516198e64c8151fbf2995a7936ff6b90 phylip-3.65-r1.ebuild 1453
-RMD160 0cafcc633077df8497e8cf5059183793037b11c0 phylip-3.65-r1.ebuild 1453
-SHA256 410dc2a17c5fb2aea2651399617964b233e1602f7b5060795bbc71627e6ff8e9 phylip-3.65-r1.ebuild 1453
 EBUILD phylip-3.66.ebuild 1458 RMD160 b01862ee89f23e6bfe456fdd1bc9aa23ee00a105 SHA1 01f4c79011c26e758b12699eaa4e133f749fdf44 SHA256 ea3c6e968bedfa065c6568857962e31ae84779410f706e1877af5397d65e13af
-MD5 2d2b0c65193027e536108db10c1d463a phylip-3.66.ebuild 1458
-RMD160 b01862ee89f23e6bfe456fdd1bc9aa23ee00a105 phylip-3.66.ebuild 1458
-SHA256 ea3c6e968bedfa065c6568857962e31ae84779410f706e1877af5397d65e13af phylip-3.66.ebuild 1458
 EBUILD phylip-3.67.ebuild 1446 RMD160 7f170d1724eefeecc8025940aa7c232a2aca6ea1 SHA1 38882796d087acb21aa37c95ea0bac826e40c087 SHA256 dd82d63d1d52d396abd0526020a9ce26ca1bfe37d08cb1aa76733bb2d9ad6c8b
-MD5 258b51070fbdd34b3d04f4bebaf659fa phylip-3.67.ebuild 1446
-RMD160 7f170d1724eefeecc8025940aa7c232a2aca6ea1 phylip-3.67.ebuild 1446
-SHA256 dd82d63d1d52d396abd0526020a9ce26ca1bfe37d08cb1aa76733bb2d9ad6c8b phylip-3.67.ebuild 1446
 MISC ChangeLog 4728 RMD160 526ba398f7b42ecdceb8431eff349163bc2f5e8b SHA1 e6dc80e89da3bfdf143bd7bbc0279b2e7d1c4df4 SHA256 5545f0a5e5a4082ace9adf1f0cf331709a2f8c59650a254700493a001c0e6e86
-MD5 62a7b58a600056999b9255d39bcf72a7 ChangeLog 4728
-RMD160 526ba398f7b42ecdceb8431eff349163bc2f5e8b ChangeLog 4728
-SHA256 5545f0a5e5a4082ace9adf1f0cf331709a2f8c59650a254700493a001c0e6e86 ChangeLog 4728
 MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
-MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
-RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
-SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
-MD5 4e9fd7fd6bd290f29e3540c7f496c8be files/digest-phylip-3.65-r1 238
-RMD160 afd6c56b5efc41946f0731468a51fb0aa3966b2a files/digest-phylip-3.65-r1 238
-SHA256 75f6b3497bced93007fa087693d8e11a31496114427206adbda770c7440109a9 files/digest-phylip-3.65-r1 238
-MD5 0e37adbd8974fce8a0698886ac6a7ae2 files/digest-phylip-3.66 238
-RMD160 2d0884b5c6a7ba4fdf356addb0697c79f2a6c4c3 files/digest-phylip-3.66 238
-SHA256 48e13f7415ff54c716d44cfce284886e109060c703644111c26f8bf5a2a12ae4 files/digest-phylip-3.66 238
-MD5 d8122f40d0ce1adc976685e2c79185a3 files/digest-phylip-3.67 238
-RMD160 b0b217354fe201c60e882a13d37dbbabe71f4e54 files/digest-phylip-3.67 238
-SHA256 ce408d6bb599d49741e59cbaabaa70adf3a066b880436084736780b722f2ca56 files/digest-phylip-3.67 238
diff --git a/sci-biology/phylip/files/digest-phylip-3.65-r1 b/sci-biology/phylip/files/digest-phylip-3.65-r1
deleted file mode 100644
index ce4b503439e1..000000000000
--- a/sci-biology/phylip/files/digest-phylip-3.65-r1
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 c89a92c8692faaba4310b69b2d89bc33 phylip-3.65.tar.gz 1036976
-RMD160 f47ba1bad6ec47e954ff16703c84fbe47e5c3f54 phylip-3.65.tar.gz 1036976
-SHA256 8f8ab66a58dbe1fdf0b615c13b6d358d6c49195fbaeaabc6190253e895c0d528 phylip-3.65.tar.gz 1036976
diff --git a/sci-biology/phylip/files/digest-phylip-3.66 b/sci-biology/phylip/files/digest-phylip-3.66
deleted file mode 100644
index b8e7f7916939..000000000000
--- a/sci-biology/phylip/files/digest-phylip-3.66
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 f069b3dce3c3dce6f2cb874868b67084 phylip-3.66.tar.gz 1149878
-RMD160 f6903257199cc1063ce557b32fb34b72ba170541 phylip-3.66.tar.gz 1149878
-SHA256 0fc6971f8f852191a30f8fa0b1f7bcb67e976f90aa2a01f9e97b7a07e06a2464 phylip-3.66.tar.gz 1149878
diff --git a/sci-biology/phylip/files/digest-phylip-3.67 b/sci-biology/phylip/files/digest-phylip-3.67
deleted file mode 100644
index 76116bc020d8..000000000000
--- a/sci-biology/phylip/files/digest-phylip-3.67
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 625e45f3959fd1d2988f0f5f1704d3e5 phylip-3.67.tar.gz 1467526
-RMD160 5636707b2585077a793c71fa81f255dfd8708100 phylip-3.67.tar.gz 1467526
-SHA256 089f31c0519b1af162628c02d4ff78570b42cd261f39b87c6406733f2f759b5d phylip-3.67.tar.gz 1467526
diff --git a/sci-biology/phyml/Manifest b/sci-biology/phyml/Manifest
index 8d1f38616b3b..31ca0b239027 100644
--- a/sci-biology/phyml/Manifest
+++ b/sci-biology/phyml/Manifest
@@ -1,26 +1,4 @@
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
-
 DIST phyml_v2.4.5.tar.gz 92143 RMD160 4883cefd023a59ec6a8e6a780774b1800b37d714 SHA1 d76920654ca50c97fa7db77125ccce29f572d238 SHA256 e8a1d3980137f8e528d0e59472aff37dbac615860a7d3ee4cdb64f30dfea296e
 EBUILD phyml-2.4.5.ebuild 712 RMD160 0ccdf4983d372c366f143ff2ad48f23d3cf165c1 SHA1 344f8da1ce0e1894f01d2d4cbe3139ab6e3304e0 SHA256 1ca66e64c7a72a97abe57bd7100d1832448495743a73ed14180d4b8cbe5c2648
-MD5 e98c76ef5e33fff70cead258037268fe phyml-2.4.5.ebuild 712
-RMD160 0ccdf4983d372c366f143ff2ad48f23d3cf165c1 phyml-2.4.5.ebuild 712
-SHA256 1ca66e64c7a72a97abe57bd7100d1832448495743a73ed14180d4b8cbe5c2648 phyml-2.4.5.ebuild 712
 MISC ChangeLog 443 RMD160 dad24e5b8a77586c64af5ef9979f4043def1f662 SHA1 ada7e81644942f4d4f57b7bcf31159b651b0d16e SHA256 73de2740a76ea25e9b573cd2f45af03c1a8e809d535647231c5e13d3d7a02a0c
-MD5 2a948c3bf039d973388b7fee94fc7d0d ChangeLog 443
-RMD160 dad24e5b8a77586c64af5ef9979f4043def1f662 ChangeLog 443
-SHA256 73de2740a76ea25e9b573cd2f45af03c1a8e809d535647231c5e13d3d7a02a0c ChangeLog 443
 MISC metadata.xml 471 RMD160 db59b371ce5a4402a6c5620cf4e75fce066ff178 SHA1 663109f3d8793ae3c3fc800eb3639ae46add0dc6 SHA256 de8e1579b6bc09e581961036083d6947e0f968447106d130a5dd11e90ba9c5d6
-MD5 95032381f71fdf8f766ad668d3a0a9c9 metadata.xml 471
-RMD160 db59b371ce5a4402a6c5620cf4e75fce066ff178 metadata.xml 471
-SHA256 de8e1579b6bc09e581961036083d6947e0f968447106d130a5dd11e90ba9c5d6 metadata.xml 471
-MD5 f859d84d728057f03bda2f75a758456e files/digest-phyml-2.4.5 235
-RMD160 55cb97b716dd7ddd79e14a4b23f865bfdf1ceb29 files/digest-phyml-2.4.5 235
-SHA256 e02e2f7050b7712bd606568cd5fb87c20109e4a44e509708464ecdbd38edb89d files/digest-phyml-2.4.5 235
------BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.7 (GNU/Linux)
-
-iD8DBQFHcQPRyuNVb5qfaOYRAumvAJ0f4LMgKmNIAx9meliqmjqBqLZ01ACdFdF7
-dw6FiXRL+/ZbI3SBzDM46Hk=
-=M2ge
------END PGP SIGNATURE-----
diff --git a/sci-biology/phyml/files/digest-phyml-2.4.5 b/sci-biology/phyml/files/digest-phyml-2.4.5
deleted file mode 100644
index 8dc8a884bdf1..000000000000
--- a/sci-biology/phyml/files/digest-phyml-2.4.5
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 0958e17f973feffb8df2f6616672a075 phyml_v2.4.5.tar.gz 92143
-RMD160 4883cefd023a59ec6a8e6a780774b1800b37d714 phyml_v2.4.5.tar.gz 92143
-SHA256 e8a1d3980137f8e528d0e59472aff37dbac615860a7d3ee4cdb64f30dfea296e phyml_v2.4.5.tar.gz 92143
diff --git a/sci-biology/poa/Manifest b/sci-biology/poa/Manifest
index 3878f5e100aa..004b2a487d0e 100644
--- a/sci-biology/poa/Manifest
+++ b/sci-biology/poa/Manifest
@@ -1,20 +1,5 @@
 AUX respect-cflags.patch 464 RMD160 c5323a4944cc953336b70f924ced36aca1533301 SHA1 e6ed80baa01ed807778411760b69e51e969b9601 SHA256 851c738b9ecfa567b21f3b551e6819b8ae05db02a3f5a42ae4aa93d55577ed0e
-MD5 bed0da2f6883825c195e05f8f00e5415 files/respect-cflags.patch 464
-RMD160 c5323a4944cc953336b70f924ced36aca1533301 files/respect-cflags.patch 464
-SHA256 851c738b9ecfa567b21f3b551e6819b8ae05db02a3f5a42ae4aa93d55577ed0e files/respect-cflags.patch 464
 DIST poaV2.tar.gz 62612 RMD160 31fdc50527a826fb7fdab4256f51e4f0f03c5492 SHA1 57f863956736498dd76afb57967036bf92c6d599 SHA256 d98d8251af558f442d909a6527694825ef6f79881b7636cad4925792559092c2
 EBUILD poa-2.ebuild 1056 RMD160 2c9c47ee0a20e79f5a181fa168b9379e9fd02eb4 SHA1 ade25dedae2213a95d46dfce88fb27b0a4af0af2 SHA256 c9a0c0ad1a5e294e558591fa452cd5998d2d033806607ff525c21389fc8ff0a0
-MD5 5fb4053442096e8eda2497cf01156e6d poa-2.ebuild 1056
-RMD160 2c9c47ee0a20e79f5a181fa168b9379e9fd02eb4 poa-2.ebuild 1056
-SHA256 c9a0c0ad1a5e294e558591fa452cd5998d2d033806607ff525c21389fc8ff0a0 poa-2.ebuild 1056
 MISC ChangeLog 422 RMD160 770686bae251d6612a9abf66ac81b91aff8c4eb0 SHA1 a47cde8c95150eef1929f97d670f1a62669d3faf SHA256 435a2fa8efe7d7b6ff0f118a7003fe878a226565a765e7387eaa8f1e041726aa
-MD5 6e4e2b441c598d9c2d96a61c360af0ed ChangeLog 422
-RMD160 770686bae251d6612a9abf66ac81b91aff8c4eb0 ChangeLog 422
-SHA256 435a2fa8efe7d7b6ff0f118a7003fe878a226565a765e7387eaa8f1e041726aa ChangeLog 422
 MISC metadata.xml 164 RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c SHA1 61a50baedfd041e663d6c2a41a28b57e22dbb6de SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f
-MD5 86813ca8050bc98ba326cb74e88150a5 metadata.xml 164
-RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c metadata.xml 164
-SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f metadata.xml 164
-MD5 c40b5662c1ced482b5071f596493c297 files/digest-poa-2 214
-RMD160 ca39533967c38989bfc8b08772a53dba3d09ce15 files/digest-poa-2 214
-SHA256 034b82fef594cbf7567ceca3fa49e761d5b1654df48056be2d708d63f792127a files/digest-poa-2 214
diff --git a/sci-biology/poa/files/digest-poa-2 b/sci-biology/poa/files/digest-poa-2
deleted file mode 100644
index acdb4416cb4e..000000000000
--- a/sci-biology/poa/files/digest-poa-2
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 9e2eb270d4867114406f53dab1311b2b poaV2.tar.gz 62612
-RMD160 31fdc50527a826fb7fdab4256f51e4f0f03c5492 poaV2.tar.gz 62612
-SHA256 d98d8251af558f442d909a6527694825ef6f79881b7636cad4925792559092c2 poaV2.tar.gz 62612
diff --git a/sci-biology/primer3/Manifest b/sci-biology/primer3/Manifest
index 1565c05a9c96..54095cf76811 100644
--- a/sci-biology/primer3/Manifest
+++ b/sci-biology/primer3/Manifest
@@ -2,31 +2,7 @@ DIST primer3-1.1.1.tar.gz 965103 RMD160 c339f779f7183c84db6b3a5104f5b0ba6269abed
 DIST primer3_1.0.0.tar.gz 936696 RMD160 c08329cafcb8bf702a1654b4348a418b20e55c88 SHA1 0227f1f26c8b45dff9033543bee4387ade173c73 SHA256 fcbcf2e540e0062f3fa0d723b443b04a1c31e3e03e3aa5d97e3b2f910499f34b
 DIST primer3_1.0.1.tar.gz 902576 RMD160 aef14e5f3346c3a2c92e83620c5f1ecb4b5f7630 SHA1 ee8680e3ca38ab3675eb35ce576b6d9541ed9fd8 SHA256 2f7641d66d75b4830a01d31dbc96c61ffad2b1f047287009906902558a9e165e
 EBUILD primer3-1.0.0.ebuild 837 RMD160 083fa071a61d9fefdc7986d9b832834b97f660b7 SHA1 3bd1b0ab99eb675ae7e3c33c9e18c7359bd6bcc5 SHA256 91ebee1871f34a70d65df703ea7dd6ad02a467a00c21a30265d1c1878bc6724b
-MD5 a37e42dad7c268e8e24b44a07d9d956d primer3-1.0.0.ebuild 837
-RMD160 083fa071a61d9fefdc7986d9b832834b97f660b7 primer3-1.0.0.ebuild 837
-SHA256 91ebee1871f34a70d65df703ea7dd6ad02a467a00c21a30265d1c1878bc6724b primer3-1.0.0.ebuild 837
 EBUILD primer3-1.0.1.ebuild 811 RMD160 996ced49e9106ceb7726147fdc9ab0bbbcc63e64 SHA1 7ca0591608eabb9ddd2cc85eb9de46c020286610 SHA256 464d62a61c619f230946236eda3152c58abc75015e49d17bd40d7390968bc0b3
-MD5 538141c15a7faa48690e10cb36de0e9d primer3-1.0.1.ebuild 811
-RMD160 996ced49e9106ceb7726147fdc9ab0bbbcc63e64 primer3-1.0.1.ebuild 811
-SHA256 464d62a61c619f230946236eda3152c58abc75015e49d17bd40d7390968bc0b3 primer3-1.0.1.ebuild 811
 EBUILD primer3-1.1.1.ebuild 791 RMD160 863f43897a45754d044392cab78029064b6b62ef SHA1 9c09cee6c909f66604ac0252d3b6e6b56f9f1234 SHA256 93f656f95c5b01630b259b8fd662159612786fcdf5ff9c4e12e09722ccb44705
-MD5 89e6efc60ea5931493c9cf85f467d259 primer3-1.1.1.ebuild 791
-RMD160 863f43897a45754d044392cab78029064b6b62ef primer3-1.1.1.ebuild 791
-SHA256 93f656f95c5b01630b259b8fd662159612786fcdf5ff9c4e12e09722ccb44705 primer3-1.1.1.ebuild 791
 MISC ChangeLog 2723 RMD160 e0212c0568df1cfc1cae84e2c1cd26bd27968e1d SHA1 da6181df649450037646b576252fb7ea2240a682 SHA256 a804d5020eafadc741195b99fa38319c3a6700fea6c6fe6898df7a44dec78968
-MD5 d69bb25b86504d285d689f8a887eb6e7 ChangeLog 2723
-RMD160 e0212c0568df1cfc1cae84e2c1cd26bd27968e1d ChangeLog 2723
-SHA256 a804d5020eafadc741195b99fa38319c3a6700fea6c6fe6898df7a44dec78968 ChangeLog 2723
 MISC metadata.xml 721 RMD160 52ec41dfbf0405bbf4d209a6c940ed519ef90f09 SHA1 7c1c44b75d2cf8549959e2947509e58cd6c433ed SHA256 0add5594c686e3cf605ad8bba0ab855d92bbf75e019ef8b79c3ca802164244ca
-MD5 8cdd554f8d2dc15deccdb6c23a375bab metadata.xml 721
-RMD160 52ec41dfbf0405bbf4d209a6c940ed519ef90f09 metadata.xml 721
-SHA256 0add5594c686e3cf605ad8bba0ab855d92bbf75e019ef8b79c3ca802164244ca metadata.xml 721
-MD5 91d7203581da4a746de7b12d26b929a6 files/digest-primer3-1.0.0 241
-RMD160 7ddf10bb30198b32859ce793e99b9bde3d585aa0 files/digest-primer3-1.0.0 241
-SHA256 e960b016d3d9583d0c812d4758b446570867e0a023366c91f83a0a0c8711ca9e files/digest-primer3-1.0.0 241
-MD5 9dd523bada7c69e46ef3a3425cf20fb7 files/digest-primer3-1.0.1 241
-RMD160 529fac4e385de34653a0830d05b1abf48ef6b6e9 files/digest-primer3-1.0.1 241
-SHA256 b888cfd675fa02d2622f34216bc977c914a6eb4612c90307462f6c3b79d955d7 files/digest-primer3-1.0.1 241
-MD5 8e398d6e03cbd683851b0340a2d36994 files/digest-primer3-1.1.1 241
-RMD160 2e565dba8e5acb8782356b039c9337f35afd401a files/digest-primer3-1.1.1 241
-SHA256 fe551851aba46ffbbe4a4c2489a401cc0265c95a92d588db2e0d443a41a28298 files/digest-primer3-1.1.1 241
diff --git a/sci-biology/primer3/files/digest-primer3-1.0.0 b/sci-biology/primer3/files/digest-primer3-1.0.0
deleted file mode 100644
index 9a7aa4cade58..000000000000
--- a/sci-biology/primer3/files/digest-primer3-1.0.0
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 58605ee607f6218a2a775345b10d15fa primer3_1.0.0.tar.gz 936696
-RMD160 c08329cafcb8bf702a1654b4348a418b20e55c88 primer3_1.0.0.tar.gz 936696
-SHA256 fcbcf2e540e0062f3fa0d723b443b04a1c31e3e03e3aa5d97e3b2f910499f34b primer3_1.0.0.tar.gz 936696
diff --git a/sci-biology/primer3/files/digest-primer3-1.0.1 b/sci-biology/primer3/files/digest-primer3-1.0.1
deleted file mode 100644
index 71b0d858a10b..000000000000
--- a/sci-biology/primer3/files/digest-primer3-1.0.1
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 4fa33b8667cec1b88f1516d175eb1bed primer3_1.0.1.tar.gz 902576
-RMD160 aef14e5f3346c3a2c92e83620c5f1ecb4b5f7630 primer3_1.0.1.tar.gz 902576
-SHA256 2f7641d66d75b4830a01d31dbc96c61ffad2b1f047287009906902558a9e165e primer3_1.0.1.tar.gz 902576
diff --git a/sci-biology/primer3/files/digest-primer3-1.1.1 b/sci-biology/primer3/files/digest-primer3-1.1.1
deleted file mode 100644
index 5e151c58b803..000000000000
--- a/sci-biology/primer3/files/digest-primer3-1.1.1
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 4975b6281be35aac7c5d5cc5b52954c4 primer3-1.1.1.tar.gz 965103
-RMD160 c339f779f7183c84db6b3a5104f5b0ba6269abed primer3-1.1.1.tar.gz 965103
-SHA256 58eb0ac4a6537246b7111023c63d4e32022bd272adac9197c042abe0c2572d82 primer3-1.1.1.tar.gz 965103
diff --git a/sci-biology/prints/Manifest b/sci-biology/prints/Manifest
index 79629c712861..e482867b1570 100644
--- a/sci-biology/prints/Manifest
+++ b/sci-biology/prints/Manifest
@@ -1,16 +1,4 @@
 DIST prints-38.0.tar.bz2 25207529 RMD160 e80dd856652326df8e6d9ec591c75ca45b4ab60e SHA1 1213deabefe276793ae11ca6f1cb2db483570ae0 SHA256 9e84ece0dd52a37a61a3c811c0d6e2a541d078ff146a3e64e9efebf9b74e0119
 EBUILD prints-38.0.ebuild 1247 RMD160 c5bc642edc9feb8b7a57ac2409261c3b5178e4c7 SHA1 b47b063df3e44c2c79ea33b2a31ca1378af428db SHA256 910040d90910c5b62dbb6f03acb0733dc5eeb9ef2e3f1c0c0eed304e97386bfd
-MD5 2708b0e5662e6cc15d874a5b5d07646c prints-38.0.ebuild 1247
-RMD160 c5bc642edc9feb8b7a57ac2409261c3b5178e4c7 prints-38.0.ebuild 1247
-SHA256 910040d90910c5b62dbb6f03acb0733dc5eeb9ef2e3f1c0c0eed304e97386bfd prints-38.0.ebuild 1247
 MISC ChangeLog 2498 RMD160 4b26b2e0301d7d8364f52979e7ee3aac3a59014b SHA1 b9b5e2ee8e708e2c0d6f82c71640fcc94e3a7664 SHA256 e6efe02cb823fec643091068065c7b8dee3822bd73c1189783b8032d0f71b17a
-MD5 90951df643afecb205b3a8ccf400df17 ChangeLog 2498
-RMD160 4b26b2e0301d7d8364f52979e7ee3aac3a59014b ChangeLog 2498
-SHA256 e6efe02cb823fec643091068065c7b8dee3822bd73c1189783b8032d0f71b17a ChangeLog 2498
 MISC metadata.xml 884 RMD160 4a24b1dfcab91b33221a29149524812ba4a6cba2 SHA1 978c65a7427a970cd0aae959a51fdf73b64d135b SHA256 e077ccb965b5b1a77c4ae9c3776d0d166c1da031ab6221f9623b7214039b44a1
-MD5 93a0d4d6b6868dcd5dff88d93ab519ba metadata.xml 884
-RMD160 4a24b1dfcab91b33221a29149524812ba4a6cba2 metadata.xml 884
-SHA256 e077ccb965b5b1a77c4ae9c3776d0d166c1da031ab6221f9623b7214039b44a1 metadata.xml 884
-MD5 c8883c57ab99163ffc6bad4704e50b58 files/digest-prints-38.0 244
-RMD160 9d7197d4849d64840f83ac9f9ef49ee0be2ec25b files/digest-prints-38.0 244
-SHA256 135dfff08e1dc9b131d55f960159d45c53110ed255415741b1717db40f8892d9 files/digest-prints-38.0 244
diff --git a/sci-biology/prints/files/digest-prints-38.0 b/sci-biology/prints/files/digest-prints-38.0
deleted file mode 100644
index 13d95acaf0ba..000000000000
--- a/sci-biology/prints/files/digest-prints-38.0
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 a19ad9818160658d7c48f0886ea94614 prints-38.0.tar.bz2 25207529
-RMD160 e80dd856652326df8e6d9ec591c75ca45b4ab60e prints-38.0.tar.bz2 25207529
-SHA256 9e84ece0dd52a37a61a3c811c0d6e2a541d078ff146a3e64e9efebf9b74e0119 prints-38.0.tar.bz2 25207529
diff --git a/sci-biology/probcons/Manifest b/sci-biology/probcons/Manifest
index ba314cc9d576..05a6ad414fe9 100644
--- a/sci-biology/probcons/Manifest
+++ b/sci-biology/probcons/Manifest
@@ -1,42 +1,8 @@
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
-
 AUX 1.10-fix-cxxflags.patch 845 RMD160 1e04c84b35c245623619c6d5a7128a8ab1c880af SHA1 9d3ecd0da754d899cd4b4016bf2dbffe5e9d87b6 SHA256 73a298114996b5d879b9ec3253d104464cb456d19382668cdf75bfe9f93f11de
-MD5 bcc20b9c5e249f07fb535f0744f816e2 files/1.10-fix-cxxflags.patch 845
-RMD160 1e04c84b35c245623619c6d5a7128a8ab1c880af files/1.10-fix-cxxflags.patch 845
-SHA256 73a298114996b5d879b9ec3253d104464cb456d19382668cdf75bfe9f93f11de files/1.10-fix-cxxflags.patch 845
 AUX probcons-1.12-cxxflags.patch 844 RMD160 c5f07264e5ef9d76baa22b676b26f4a51c76fc73 SHA1 a797284ff9a7df4a7b8bff9ee286594109aabdda SHA256 56e30ce88806c520296e0e06230e4020ac341e91738106aa5392d5fad4975502
-MD5 39dccb33f46968a511b9cb7b39e71810 files/probcons-1.12-cxxflags.patch 844
-RMD160 c5f07264e5ef9d76baa22b676b26f4a51c76fc73 files/probcons-1.12-cxxflags.patch 844
-SHA256 56e30ce88806c520296e0e06230e4020ac341e91738106aa5392d5fad4975502 files/probcons-1.12-cxxflags.patch 844
 DIST probcons_v1_10.tar.gz 43004 RMD160 ba7caa3cadd702c3dc00c20f01bfb22416435784 SHA1 773d82f6883202ec41e5dee39713b5db649ef5b0 SHA256 f7a775ac4ba3b3261c0bbe5d2c203c96fc2551e67448aefbac83b461c931b518
 DIST probcons_v1_12.tar.gz 43200 RMD160 4d7d9a89c2c95f22056719c8349216ca1ba635c9 SHA1 ee6ce81777c9ce366f575ab4096ff07f39af9829 SHA256 ecf3f9ab9ad47e14787c76d1c64aeea5533d4038c4be0236c00cdd79104cf383
 EBUILD probcons-1.10.ebuild 1236 RMD160 b24658a6866f556bab2d9ee041540ed65fba961b SHA1 2302f7a9c2a1ba349b3949546187e34e2c7aeafe SHA256 86a6355ad1d5a3bc7914579262047bde097c3228d5ef88ae6a988beb3577c964
-MD5 7ffee477cf8d489117305b770a90d766 probcons-1.10.ebuild 1236
-RMD160 b24658a6866f556bab2d9ee041540ed65fba961b probcons-1.10.ebuild 1236
-SHA256 86a6355ad1d5a3bc7914579262047bde097c3228d5ef88ae6a988beb3577c964 probcons-1.10.ebuild 1236
 EBUILD probcons-1.12.ebuild 1264 RMD160 bdcf009acfdb017a4e4a74961b2372c49c9fb5ff SHA1 00db7a6b48815d9ad17f70540b46ebf84e9dcb29 SHA256 49a648f04645247eba1566e77fc7eb93683245874b7ecf6158c9f141b35cb2bd
-MD5 e3f1985c6bd395e914bbdc2b17c44270 probcons-1.12.ebuild 1264
-RMD160 bdcf009acfdb017a4e4a74961b2372c49c9fb5ff probcons-1.12.ebuild 1264
-SHA256 49a648f04645247eba1566e77fc7eb93683245874b7ecf6158c9f141b35cb2bd probcons-1.12.ebuild 1264
 MISC ChangeLog 1316 RMD160 9bee21ef7811ad7b8c78f4a9a0b80f48a4f42a57 SHA1 77247e2ad0604bb4fc59418d8f79c8259a85678b SHA256 e1175d69e7e8c0f9c7416d3fc1463caabcdbfe98c521a931bce046019bf565f2
-MD5 7d64be8e15d3d186638a53753fd69d66 ChangeLog 1316
-RMD160 9bee21ef7811ad7b8c78f4a9a0b80f48a4f42a57 ChangeLog 1316
-SHA256 e1175d69e7e8c0f9c7416d3fc1463caabcdbfe98c521a931bce046019bf565f2 ChangeLog 1316
 MISC metadata.xml 164 RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c SHA1 61a50baedfd041e663d6c2a41a28b57e22dbb6de SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f
-MD5 86813ca8050bc98ba326cb74e88150a5 metadata.xml 164
-RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c metadata.xml 164
-SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f metadata.xml 164
-MD5 09ec4c47c33e46e812d1c8a09f00a91a files/digest-probcons-1.10 241
-RMD160 2d5910f5cca5eb03d3d6e7ca83954774d4080051 files/digest-probcons-1.10 241
-SHA256 6dcaf5dcb70c5db87bebfb7d61342cc1f56758d67fc2db674ae900bc685406ef files/digest-probcons-1.10 241
-MD5 f54becdae621af5a5aa441ea2c40c9d9 files/digest-probcons-1.12 241
-RMD160 b5af564aedd7436ed6ba3dae01a376f40675fe23 files/digest-probcons-1.12 241
-SHA256 186a3dfc272aaacf51a6682082f6e7366cb9d07ec847cc84486f4c1e46507f46 files/digest-probcons-1.12 241
------BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.7 (GNU/Linux)
-
-iD8DBQFHCEbNXVaO67S1rtsRAqUHAKCmJOOW0NI9NVy1dIx5lfEh+ZlwGQCdFn8P
-2RKDLyzxRBGD5fmvAPfxDJg=
-=n/wE
------END PGP SIGNATURE-----
diff --git a/sci-biology/probcons/files/digest-probcons-1.10 b/sci-biology/probcons/files/digest-probcons-1.10
deleted file mode 100644
index e49b2933d04c..000000000000
--- a/sci-biology/probcons/files/digest-probcons-1.10
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 c7938b95732a85c35225bafd4b5b174f probcons_v1_10.tar.gz 43004
-RMD160 ba7caa3cadd702c3dc00c20f01bfb22416435784 probcons_v1_10.tar.gz 43004
-SHA256 f7a775ac4ba3b3261c0bbe5d2c203c96fc2551e67448aefbac83b461c931b518 probcons_v1_10.tar.gz 43004
diff --git a/sci-biology/probcons/files/digest-probcons-1.12 b/sci-biology/probcons/files/digest-probcons-1.12
deleted file mode 100644
index 655d2ce3110e..000000000000
--- a/sci-biology/probcons/files/digest-probcons-1.12
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 a658e24b07aaa9e8194317345133ac9d probcons_v1_12.tar.gz 43200
-RMD160 4d7d9a89c2c95f22056719c8349216ca1ba635c9 probcons_v1_12.tar.gz 43200
-SHA256 ecf3f9ab9ad47e14787c76d1c64aeea5533d4038c4be0236c00cdd79104cf383 probcons_v1_12.tar.gz 43200
diff --git a/sci-biology/prosite/Manifest b/sci-biology/prosite/Manifest
index 930ba233b692..0222119b2ff0 100644
--- a/sci-biology/prosite/Manifest
+++ b/sci-biology/prosite/Manifest
@@ -2,31 +2,7 @@ DIST prosite-19.36.tar.bz2 4462981 RMD160 4d80651193b4c34bfdf42b770d4ec079276660
 DIST prosite-20.16.tar.bz2 5261819 RMD160 2fba63783b6694afb28b9b5c8f7f096d51582708 SHA1 8cdca4161a09b658605cde886ece57a7a966274b SHA256 35d03c4ca41da28766acebe208b4671e6a0d4e6f3c45c6e2fd0d66a934c4efa8
 DIST prosite-20.17.tar.bz2 5274963 RMD160 5ec896c099fa739a636d5aa77e017bcbcbee78da SHA1 0a622243c0be3c46ad95af9840acf8f3d0e76c40 SHA256 cd7a9a743d224968e38e1143cbeea40fbd0ef6231a1672687ec527079f21aded
 EBUILD prosite-19.36.ebuild 1235 RMD160 f181285bcceddecc716107f306ccc336eaeb8bbb SHA1 c07fcd927268a722decd8ed7fdd47ff342ff3dc6 SHA256 362ee23cc742ce746a3ea8b91cba36df9a2a933729d5f8281812c21666bfd02b
-MD5 af2c69e4c4f2137ea24003bcbad80936 prosite-19.36.ebuild 1235
-RMD160 f181285bcceddecc716107f306ccc336eaeb8bbb prosite-19.36.ebuild 1235
-SHA256 362ee23cc742ce746a3ea8b91cba36df9a2a933729d5f8281812c21666bfd02b prosite-19.36.ebuild 1235
 EBUILD prosite-20.16.ebuild 1329 RMD160 bdfe56f1e3c421bf124f85997025649b65b2460d SHA1 ebd08e54cbfd1a88f333703df57018ac02d09132 SHA256 bd91962039047564a5347392ff6216ede725564d827335f673fe794f69e3ef92
-MD5 73e303ddf4cb76d7dfc84b7cc2d55b89 prosite-20.16.ebuild 1329
-RMD160 bdfe56f1e3c421bf124f85997025649b65b2460d prosite-20.16.ebuild 1329
-SHA256 bd91962039047564a5347392ff6216ede725564d827335f673fe794f69e3ef92 prosite-20.16.ebuild 1329
 EBUILD prosite-20.17.ebuild 1329 RMD160 37d2bcd4425a1509872a5129c60cc231b828af02 SHA1 1b8813702c106b761a9e64c8178c1a5d6a105618 SHA256 66c3458d12cc748b8c70bb0627c3f2f28324182d8515c862153ce041f64ae7d3
-MD5 43ede21cebae879087bf1dfabe6c5834 prosite-20.17.ebuild 1329
-RMD160 37d2bcd4425a1509872a5129c60cc231b828af02 prosite-20.17.ebuild 1329
-SHA256 66c3458d12cc748b8c70bb0627c3f2f28324182d8515c862153ce041f64ae7d3 prosite-20.17.ebuild 1329
 MISC ChangeLog 15133 RMD160 1b31f9aa7e523923ee3edf63b2e4ddf08fe63e4a SHA1 8b60be2f67ff27a2cb0be0337dd65a695da25a1e SHA256 e7341bf11aba713931af74603965a3a54ddd3c7a0f6f8631f5371d6395a0cf30
-MD5 2a97bf73ccc5e2a63fefe1a4320e5d42 ChangeLog 15133
-RMD160 1b31f9aa7e523923ee3edf63b2e4ddf08fe63e4a ChangeLog 15133
-SHA256 e7341bf11aba713931af74603965a3a54ddd3c7a0f6f8631f5371d6395a0cf30 ChangeLog 15133
 MISC metadata.xml 818 RMD160 c06d1d70df7c3aa4798785b0cec9cb3b20e29009 SHA1 6e81d46dbe14beff674cca67bef555021224dcfd SHA256 f749fe556ef9340ad76f45fdf9544ec41b57ad13dae3a07364932a8ed67deb0b
-MD5 0191a7da3d4abe623c51f8b12e850701 metadata.xml 818
-RMD160 c06d1d70df7c3aa4798785b0cec9cb3b20e29009 metadata.xml 818
-SHA256 f749fe556ef9340ad76f45fdf9544ec41b57ad13dae3a07364932a8ed67deb0b metadata.xml 818
-MD5 ee315e97a6716f327698a09cdc260e48 files/digest-prosite-19.36 247
-RMD160 1a0acb62b3b8bc94c6a758fea3e4cdebfe299e7a files/digest-prosite-19.36 247
-SHA256 554b5befa9881e35fb32db0cf97c71f697a76c3cfed3e30a2cc79a80e89402c9 files/digest-prosite-19.36 247
-MD5 2e28553c1580d377b00e29fc9e29411b files/digest-prosite-20.16 247
-RMD160 b5a6166a6703a84a1b470ddb19080f12dfaea146 files/digest-prosite-20.16 247
-SHA256 c940ba95c6608d934db31d9f501eb43bbad9ecbf6dbe29d002c30423af43aed8 files/digest-prosite-20.16 247
-MD5 a194c8483ffc2642fef4dece87299f89 files/digest-prosite-20.17 247
-RMD160 1a7b5a4145b62057dcc9f78e714f1dc935823182 files/digest-prosite-20.17 247
-SHA256 3c751b4eaddd676222b67e7d5320548fe9569c2a423d8c850ca26e33c9f3cfd8 files/digest-prosite-20.17 247
diff --git a/sci-biology/prosite/files/digest-prosite-19.36 b/sci-biology/prosite/files/digest-prosite-19.36
deleted file mode 100644
index 0ce9172a465f..000000000000
--- a/sci-biology/prosite/files/digest-prosite-19.36
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 f5db0b1ff9444cb1d81db38ddd641871 prosite-19.36.tar.bz2 4462981
-RMD160 4d80651193b4c34bfdf42b770d4ec07927666057 prosite-19.36.tar.bz2 4462981
-SHA256 6f923d4794f50c8e68d030d01cb6675579007cc04c197d811886dfb4ae853607 prosite-19.36.tar.bz2 4462981
diff --git a/sci-biology/prosite/files/digest-prosite-20.16 b/sci-biology/prosite/files/digest-prosite-20.16
deleted file mode 100644
index 1205cddb483e..000000000000
--- a/sci-biology/prosite/files/digest-prosite-20.16
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 27da0642ed7d4e0ba28be901102a30df prosite-20.16.tar.bz2 5261819
-RMD160 2fba63783b6694afb28b9b5c8f7f096d51582708 prosite-20.16.tar.bz2 5261819
-SHA256 35d03c4ca41da28766acebe208b4671e6a0d4e6f3c45c6e2fd0d66a934c4efa8 prosite-20.16.tar.bz2 5261819
diff --git a/sci-biology/prosite/files/digest-prosite-20.17 b/sci-biology/prosite/files/digest-prosite-20.17
deleted file mode 100644
index 976971def755..000000000000
--- a/sci-biology/prosite/files/digest-prosite-20.17
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 a566c60117b472fd3a5ad39a24786d66 prosite-20.17.tar.bz2 5274963
-RMD160 5ec896c099fa739a636d5aa77e017bcbcbee78da prosite-20.17.tar.bz2 5274963
-SHA256 cd7a9a743d224968e38e1143cbeea40fbd0ef6231a1672687ec527079f21aded prosite-20.17.tar.bz2 5274963
diff --git a/sci-biology/qrna/Manifest b/sci-biology/qrna/Manifest
index 536af98212b7..b6ddc609c454 100644
--- a/sci-biology/qrna/Manifest
+++ b/sci-biology/qrna/Manifest
@@ -1,20 +1,5 @@
 AUX 26qrna 30 RMD160 c6eb4ba1c559f2cce296915c3d166e134d54b7c4 SHA1 34b74c24f599e5387dd788ec2df1752b043b7b9a SHA256 218d879e5ef893cba33d8be7e0a6cba3f08c0a475781bbbb4c32bde6e79a32b7
-MD5 9127b0a4628230fc3bf2e201ca7519a9 files/26qrna 30
-RMD160 c6eb4ba1c559f2cce296915c3d166e134d54b7c4 files/26qrna 30
-SHA256 218d879e5ef893cba33d8be7e0a6cba3f08c0a475781bbbb4c32bde6e79a32b7 files/26qrna 30
 DIST qrna-2.0.3c.tar.bz2 6423705 RMD160 df0fe89e45d64cf6f205dd3e524a9a27d6c14961 SHA1 1c577a495d538eb50531c4672decae85649ac066 SHA256 fc88b58dddab26f20477a50340453e9d360ea34956ba526f7db6959283399b1c
 EBUILD qrna-2.0.3c.ebuild 1381 RMD160 bf5831d0d3eac8181df97ba258234107bbb915a6 SHA1 370915fa1fa868d86be5288226dba1854135b81e SHA256 a14e2d91556c6e9f94eb5fd93528c3eba97d7b9fb9738bbb14d9719bbec8e608
-MD5 fdf5ec7d5a3c2af4bb95e904b5b68b9d qrna-2.0.3c.ebuild 1381
-RMD160 bf5831d0d3eac8181df97ba258234107bbb915a6 qrna-2.0.3c.ebuild 1381
-SHA256 a14e2d91556c6e9f94eb5fd93528c3eba97d7b9fb9738bbb14d9719bbec8e608 qrna-2.0.3c.ebuild 1381
 MISC ChangeLog 2407 RMD160 3a9b8fb4c8901ed632d89fa009e2e0034761c063 SHA1 f822f9e6bd40a2fd81776807f090121538899b0b SHA256 3f7c701624eaa4e29a9e62405240bb6637408eadd453c7ca857d238ce22f55c0
-MD5 8468acde329e02d16b60a80360cc22c4 ChangeLog 2407
-RMD160 3a9b8fb4c8901ed632d89fa009e2e0034761c063 ChangeLog 2407
-SHA256 3f7c701624eaa4e29a9e62405240bb6637408eadd453c7ca857d238ce22f55c0 ChangeLog 2407
 MISC metadata.xml 165 RMD160 b247a16b6552b292d1249ff4e8ea5060ad2c4372 SHA1 a9f91a3a303f4c85430e21eca09913e1c9426366 SHA256 560c375768c8e164d954d61924f110da785b4771012cb830963eaa267a319132
-MD5 aec0225cc3c4bc9490275e897849b449 metadata.xml 165
-RMD160 b247a16b6552b292d1249ff4e8ea5060ad2c4372 metadata.xml 165
-SHA256 560c375768c8e164d954d61924f110da785b4771012cb830963eaa267a319132 metadata.xml 165
-MD5 6b9b1477eb3bc8923f4c58daaf7b33f2 files/digest-qrna-2.0.3c 241
-RMD160 33b50ce13e5cfcf0e89e6560bd56a00739afd1e1 files/digest-qrna-2.0.3c 241
-SHA256 c5d90b97889d5d0cde4f7f0e55715cbee8a0681ebb7e0f2632a92f8f67364f2e files/digest-qrna-2.0.3c 241
diff --git a/sci-biology/qrna/files/digest-qrna-2.0.3c b/sci-biology/qrna/files/digest-qrna-2.0.3c
deleted file mode 100644
index 17689795422e..000000000000
--- a/sci-biology/qrna/files/digest-qrna-2.0.3c
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 b1826da543a4b00070979a617f484443 qrna-2.0.3c.tar.bz2 6423705
-RMD160 df0fe89e45d64cf6f205dd3e524a9a27d6c14961 qrna-2.0.3c.tar.bz2 6423705
-SHA256 fc88b58dddab26f20477a50340453e9d360ea34956ba526f7db6959283399b1c qrna-2.0.3c.tar.bz2 6423705
diff --git a/sci-biology/readseq/Manifest b/sci-biology/readseq/Manifest
index f19f1657e3ee..5114f0d713b2 100644
--- a/sci-biology/readseq/Manifest
+++ b/sci-biology/readseq/Manifest
@@ -1,16 +1,4 @@
 DIST readseq_1.orig.tar.gz 54557 RMD160 eb9f08df46f4cb439a22657c1ddb724f9b4a5e3d SHA1 474839186eec28f650ac89a33829673fa40c3bbb SHA256 b704d7a12c5d834390f3ed4233f1409c5f1ed53b0b9accf5ab632a513de1183c
 EBUILD readseq-19930201.ebuild 638 RMD160 cac475202534c8c8616043ba8da31e19321812b4 SHA1 3e947d605d38e97ea080bfbcc733150e4d5e4299 SHA256 367ad4fb3a0e0cb362304b4bb76177c3404a889f406c544018dcd06406560889
-MD5 a2d8d73e1fcaa91b5a39106074363cac readseq-19930201.ebuild 638
-RMD160 cac475202534c8c8616043ba8da31e19321812b4 readseq-19930201.ebuild 638
-SHA256 367ad4fb3a0e0cb362304b4bb76177c3404a889f406c544018dcd06406560889 readseq-19930201.ebuild 638
 MISC ChangeLog 1237 RMD160 888092f66dcb122089feb3bdd51efd2d8b80bda8 SHA1 eb4f34fac1dd64a449bf0296caa6f52ae81f73ec SHA256 d99c27bac71164987e70e22df843e148c10c0dfdfb510ab2e0f3f568fbddc983
-MD5 b30c09777673085898faa8b784d4e014 ChangeLog 1237
-RMD160 888092f66dcb122089feb3bdd51efd2d8b80bda8 ChangeLog 1237
-SHA256 d99c27bac71164987e70e22df843e148c10c0dfdfb510ab2e0f3f568fbddc983 ChangeLog 1237
 MISC metadata.xml 408 RMD160 5ce131c98012b12cbb1b8bf7fc11e56ce54067c5 SHA1 adb2f71c92a367dfa4ef78c775ed44803d331188 SHA256 9fbdb6518d4e841ab2f257bf953a287604f4c9dc00ec63556fa24d3664fad939
-MD5 53a2c41fad66ff75beecb75e65c2d3e4 metadata.xml 408
-RMD160 5ce131c98012b12cbb1b8bf7fc11e56ce54067c5 metadata.xml 408
-SHA256 9fbdb6518d4e841ab2f257bf953a287604f4c9dc00ec63556fa24d3664fad939 metadata.xml 408
-MD5 471ad4e9931ebc92d241f827e1d0b312 files/digest-readseq-19930201 241
-RMD160 4597c76bcfc47c83ac61424e7786817d4303cb88 files/digest-readseq-19930201 241
-SHA256 466f7531e62b141f7837f4855b4bc0f8419cac3f27e132e5af48ce5940c53f03 files/digest-readseq-19930201 241
diff --git a/sci-biology/readseq/files/digest-readseq-19930201 b/sci-biology/readseq/files/digest-readseq-19930201
deleted file mode 100644
index 8cde7db33527..000000000000
--- a/sci-biology/readseq/files/digest-readseq-19930201
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 3973daff73375953369c31c5c1661699 readseq_1.orig.tar.gz 54557
-RMD160 eb9f08df46f4cb439a22657c1ddb724f9b4a5e3d readseq_1.orig.tar.gz 54557
-SHA256 b704d7a12c5d834390f3ed4233f1409c5f1ed53b0b9accf5ab632a513de1183c readseq_1.orig.tar.gz 54557
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index 73fec7b1b25b..c72522013d2e 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -2,31 +2,7 @@ DIST rebase-610.tar.bz2 183836 RMD160 f39b66acd481383f4b2dda932ad42d902bd23d34 S
 DIST rebase-707.tar.bz2 184790 RMD160 1f6e7f2b7e9cdba5321162e5404159edb62a35b1 SHA1 8c4e9cc212ec34992797fddf0af9353e5673b758 SHA256 556015ce9eed286a9864a1f8d051447f0daf7c2e7141575330bd855b8451a7fe
 DIST rebase-708.tar.bz2 185379 RMD160 7a70c90cec198e0bc60bb7d16d00a9080b5d11c0 SHA1 8673d254b06d64d9f1fc60594e36ea15cdf1d66d SHA256 0031da580a808a096ca596b27ec0fb1167128272d030332031b901b00115c305
 EBUILD rebase-610.ebuild 1334 RMD160 4001cc3bdf6cf840ce5c1f3eb811d679e0ebd9ff SHA1 b50fdc5f54c7a34406deb2bf8661a331abdb317b SHA256 02d029f6a31ff99794a9e8fb3d886d67eab470696c891f3996d2754be6b9f067
-MD5 d940265171168a8cb72cda1fc34bc007 rebase-610.ebuild 1334
-RMD160 4001cc3bdf6cf840ce5c1f3eb811d679e0ebd9ff rebase-610.ebuild 1334
-SHA256 02d029f6a31ff99794a9e8fb3d886d67eab470696c891f3996d2754be6b9f067 rebase-610.ebuild 1334
 EBUILD rebase-707.ebuild 1374 RMD160 f73633b25cb23b65b7dd74a8c7d3652aa079f253 SHA1 dc209063874821546dddd0d99ff70e47df93056b SHA256 c136eebce3fd4983d046a18baeb247c59273eeae7023d801f40bf788b7a5db76
-MD5 839857f6247ec5f8b558690b387c6f36 rebase-707.ebuild 1374
-RMD160 f73633b25cb23b65b7dd74a8c7d3652aa079f253 rebase-707.ebuild 1374
-SHA256 c136eebce3fd4983d046a18baeb247c59273eeae7023d801f40bf788b7a5db76 rebase-707.ebuild 1374
 EBUILD rebase-708.ebuild 1374 RMD160 b8b2ed660c02088f6515644c821af6e43a6d8eaf SHA1 0ee36dcb5a982731d70bb68955ce1fb26961ac6b SHA256 078541ea7d04234955175525b723897afe72c803bb7e0c505a963445f8044e1d
-MD5 a17a629d27cd59d2421cf230a54562c6 rebase-708.ebuild 1374
-RMD160 b8b2ed660c02088f6515644c821af6e43a6d8eaf rebase-708.ebuild 1374
-SHA256 078541ea7d04234955175525b723897afe72c803bb7e0c505a963445f8044e1d rebase-708.ebuild 1374
 MISC ChangeLog 11621 RMD160 d261468217ff9aaf22f9e9e9842bf674a0670c4f SHA1 2b8ead327abc3c2de1703391dbebbc9cd6ccf02b SHA256 1c319a9d657c028a5c3247ad35b7b865abc1ac16e1801d96b68370b9c2d10d91
-MD5 9852da855db58e1945366a75dfea0348 ChangeLog 11621
-RMD160 d261468217ff9aaf22f9e9e9842bf674a0670c4f ChangeLog 11621
-SHA256 1c319a9d657c028a5c3247ad35b7b865abc1ac16e1801d96b68370b9c2d10d91 ChangeLog 11621
 MISC metadata.xml 908 RMD160 c4dc96997a4563391f74a006ccecebd04b4ea8a3 SHA1 32a6173a7ffa2900bb3ae75267684c3c4901ba1d SHA256 cbff81a8c24eb49cf76d5e9a61a86415d79c60e2e8a15594975273ba0d0f35af
-MD5 a463e92a7c6c7832dc446b533dd7b454 metadata.xml 908
-RMD160 c4dc96997a4563391f74a006ccecebd04b4ea8a3 metadata.xml 908
-SHA256 cbff81a8c24eb49cf76d5e9a61a86415d79c60e2e8a15594975273ba0d0f35af metadata.xml 908
-MD5 ca6d69c55ad03cd0b89e2bf5e7d040eb files/digest-rebase-610 235
-RMD160 10a85678678b1d8118d79fa8e61ab84078e0cc51 files/digest-rebase-610 235
-SHA256 da565ac0115d50a835452a5c7faaf6184b7a7e7478a59bad9e21c115635905ab files/digest-rebase-610 235
-MD5 c38b09f56bcd0b88214f883b8507d23e files/digest-rebase-707 235
-RMD160 6d94e2e013aabdf9806e50e6950256af270e25e2 files/digest-rebase-707 235
-SHA256 8af718b0865101c0d7724259c9c85ea43e38f3880ad0e6ca77c59dcfc109ee6f files/digest-rebase-707 235
-MD5 61a1c8d840c2218b9491fe247031c374 files/digest-rebase-708 235
-RMD160 70fa7f3f38c14224de656cfae965b5686f20d951 files/digest-rebase-708 235
-SHA256 80a243d1846c24e93785581c393fbc430efe24583772eae66fc40cf85fe5bce6 files/digest-rebase-708 235
diff --git a/sci-biology/rebase/files/digest-rebase-610 b/sci-biology/rebase/files/digest-rebase-610
deleted file mode 100644
index 27823be7f328..000000000000
--- a/sci-biology/rebase/files/digest-rebase-610
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 dc9c04566e46ff8f3796f245e8fdfa07 rebase-610.tar.bz2 183836
-RMD160 f39b66acd481383f4b2dda932ad42d902bd23d34 rebase-610.tar.bz2 183836
-SHA256 f558655b399ab51cbfdf7bc3982025a7af66484528453360742bd45eac85b61d rebase-610.tar.bz2 183836
diff --git a/sci-biology/rebase/files/digest-rebase-707 b/sci-biology/rebase/files/digest-rebase-707
deleted file mode 100644
index 3c7a000c0ff7..000000000000
--- a/sci-biology/rebase/files/digest-rebase-707
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 dc3b473a035011031962003f5027fd39 rebase-707.tar.bz2 184790
-RMD160 1f6e7f2b7e9cdba5321162e5404159edb62a35b1 rebase-707.tar.bz2 184790
-SHA256 556015ce9eed286a9864a1f8d051447f0daf7c2e7141575330bd855b8451a7fe rebase-707.tar.bz2 184790
diff --git a/sci-biology/rebase/files/digest-rebase-708 b/sci-biology/rebase/files/digest-rebase-708
deleted file mode 100644
index a9dc9fb61ae9..000000000000
--- a/sci-biology/rebase/files/digest-rebase-708
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 0d52f71a759f4bd9c31aa27f9edc3f7c rebase-708.tar.bz2 185379
-RMD160 7a70c90cec198e0bc60bb7d16d00a9080b5d11c0 rebase-708.tar.bz2 185379
-SHA256 0031da580a808a096ca596b27ec0fb1167128272d030332031b901b00115c305 rebase-708.tar.bz2 185379
diff --git a/sci-biology/rnaview/Manifest b/sci-biology/rnaview/Manifest
index b5e9ded3d5fe..bb6de589210a 100644
--- a/sci-biology/rnaview/Manifest
+++ b/sci-biology/rnaview/Manifest
@@ -1,16 +1,4 @@
 DIST rnaview-20040713.tar.bz2 433916 RMD160 1aa0a3dd7af24a543c00027b958bbaaedd0f163a SHA1 b87d6b6936f2942fadbd4e339632effd0835239e SHA256 0961779c83e247a4b04c02d90d3850e8c4c889b630194ea1516cbeb6c6dbad17
 EBUILD rnaview-20040713.ebuild 953 RMD160 84b48d31ecf519973ee2b2fb840985a387987530 SHA1 51e3894d8e91a41b9d27c9c95e000b681a1db656 SHA256 bb72d245280de8c2d2f79bc8bb451d3db6283de58786e93d991cca8745f42f8d
-MD5 2857c0ecbb7345a1e60e2b8bd0621d27 rnaview-20040713.ebuild 953
-RMD160 84b48d31ecf519973ee2b2fb840985a387987530 rnaview-20040713.ebuild 953
-SHA256 bb72d245280de8c2d2f79bc8bb451d3db6283de58786e93d991cca8745f42f8d rnaview-20040713.ebuild 953
 MISC ChangeLog 1393 RMD160 6bb8bcd208f8d1966368f4aa1ab77290e7c27b6d SHA1 73da99b7256a85c4984ad7e88fa2fa1791e5cc17 SHA256 111fd9a46b3a34bb21ec270c43984e80685366bfb7a522acb0edd6f277fb16b7
-MD5 c6c17479d34a08cf4461523f1475fc34 ChangeLog 1393
-RMD160 6bb8bcd208f8d1966368f4aa1ab77290e7c27b6d ChangeLog 1393
-SHA256 111fd9a46b3a34bb21ec270c43984e80685366bfb7a522acb0edd6f277fb16b7 ChangeLog 1393
 MISC metadata.xml 570 RMD160 e4eaa219425a7d2522fd1d148d6ea6bd4940a3cf SHA1 00a65e9b64e6e8a6071fec4abad0d41038872c81 SHA256 361679aa0f120fbb2370915ad12b84a7c1f707fd6c5de1da049d4c131986aea3
-MD5 23a5e9360a9033e3eef00365f039c635 metadata.xml 570
-RMD160 e4eaa219425a7d2522fd1d148d6ea6bd4940a3cf metadata.xml 570
-SHA256 361679aa0f120fbb2370915ad12b84a7c1f707fd6c5de1da049d4c131986aea3 metadata.xml 570
-MD5 330f23f94da0e97ea0d8e51fb5ccc471 files/digest-rnaview-20040713 253
-RMD160 b2f10eaca25b83fecbf3ee5f22b616b541664572 files/digest-rnaview-20040713 253
-SHA256 093cd92b6305214e1ca5ed516a9780a1b053ac9b26b37b509c8af44ab66c4bf4 files/digest-rnaview-20040713 253
diff --git a/sci-biology/rnaview/files/digest-rnaview-20040713 b/sci-biology/rnaview/files/digest-rnaview-20040713
deleted file mode 100644
index df23e862bda8..000000000000
--- a/sci-biology/rnaview/files/digest-rnaview-20040713
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 74463a5939013c85801a7cd9f56a2099 rnaview-20040713.tar.bz2 433916
-RMD160 1aa0a3dd7af24a543c00027b958bbaaedd0f163a rnaview-20040713.tar.bz2 433916
-SHA256 0961779c83e247a4b04c02d90d3850e8c4c889b630194ea1516cbeb6c6dbad17 rnaview-20040713.tar.bz2 433916
diff --git a/sci-biology/seaview/Manifest b/sci-biology/seaview/Manifest
index 342b830bdc58..33bc944f6eb6 100644
--- a/sci-biology/seaview/Manifest
+++ b/sci-biology/seaview/Manifest
@@ -1,20 +1,5 @@
 AUX seaview.desktop 207 RMD160 d5b4e57a1866d5f2d384ab1f6acf21292061570f SHA1 38b4a0b0055da291020690e9ac1974d7aed94871 SHA256 314a791477d6059888bce45de2627d58d1b8998a25200d6a9eb8f13c759c7b32
-MD5 f8348935ffcd56ee4657a4f2de69c5bc files/seaview.desktop 207
-RMD160 d5b4e57a1866d5f2d384ab1f6acf21292061570f files/seaview.desktop 207
-SHA256 314a791477d6059888bce45de2627d58d1b8998a25200d6a9eb8f13c759c7b32 files/seaview.desktop 207
 DIST seaview_2.2.tar.gz 155877 RMD160 59b9b0782138a2c46a6fec36cf15042b37aa72de SHA1 d38191022bfe95112460800a1fc1dcefbc761bec SHA256 ad1d7a66dcc5f97538b2d51e3a4e91295476c1fdd2b8877073bd12bab4d86d99
 EBUILD seaview-2.2.ebuild 1497 RMD160 bea3b0878e3b23fa1e7d0f5aadd4c54b1dc498e1 SHA1 6f7c5d7aba73db1e35db9731fa20b28d9117562e SHA256 21a5e477ccf21598a94be4e0e5c89d47e2c4289a550a836b9978964a1da3a705
-MD5 85e0827f3929c6daa60de974215cc24b seaview-2.2.ebuild 1497
-RMD160 bea3b0878e3b23fa1e7d0f5aadd4c54b1dc498e1 seaview-2.2.ebuild 1497
-SHA256 21a5e477ccf21598a94be4e0e5c89d47e2c4289a550a836b9978964a1da3a705 seaview-2.2.ebuild 1497
 MISC ChangeLog 3848 RMD160 5f98ba67dd677c807c2f740d83dfa0e3f10a85f9 SHA1 ecf1aea7f7fcc397885b07967a5f33e398b786ac SHA256 374e90e8fd827c4de7badde901a543e8a737da7d07b5bdaf6ff1a16c3cb309d7
-MD5 f09288cc41da033707234b84a592a52e ChangeLog 3848
-RMD160 5f98ba67dd677c807c2f740d83dfa0e3f10a85f9 ChangeLog 3848
-SHA256 374e90e8fd827c4de7badde901a543e8a737da7d07b5bdaf6ff1a16c3cb309d7 ChangeLog 3848
 MISC metadata.xml 622 RMD160 971008c946d3c492a86c946d8be5ed7881981600 SHA1 4a772f6c65f56de1a01eb770bc3b00998e8fc793 SHA256 a1d62029203598fbf7b1f3d97d004ff7fccf30246276ff8f9ba99b7696691529
-MD5 62b43c9f7320b7c9c27eac02b2644cd5 metadata.xml 622
-RMD160 971008c946d3c492a86c946d8be5ed7881981600 metadata.xml 622
-SHA256 a1d62029203598fbf7b1f3d97d004ff7fccf30246276ff8f9ba99b7696691529 metadata.xml 622
-MD5 33f3d837208d64e3fb76bc6b72d947ec files/digest-seaview-2.2 235
-RMD160 5f47ae4b90a1691f274ef0d606d74f6ca48d0581 files/digest-seaview-2.2 235
-SHA256 e4b522345bdf014d57eda6efdaefe1b248c01324c3a6b3f90a5c32d3ef3d2d36 files/digest-seaview-2.2 235
diff --git a/sci-biology/seaview/files/digest-seaview-2.2 b/sci-biology/seaview/files/digest-seaview-2.2
deleted file mode 100644
index 63701108bc71..000000000000
--- a/sci-biology/seaview/files/digest-seaview-2.2
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 582d5feeae8563cb4e3f9793e29010b5 seaview_2.2.tar.gz 155877
-RMD160 59b9b0782138a2c46a6fec36cf15042b37aa72de seaview_2.2.tar.gz 155877
-SHA256 ad1d7a66dcc5f97538b2d51e3a4e91295476c1fdd2b8877073bd12bab4d86d99 seaview_2.2.tar.gz 155877
diff --git a/sci-biology/sim4/Manifest b/sci-biology/sim4/Manifest
index 0b49f8683650..241af0ac4e89 100644
--- a/sci-biology/sim4/Manifest
+++ b/sci-biology/sim4/Manifest
@@ -1,26 +1,4 @@
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
-
 DIST sim4.tar.gz 60814 RMD160 5acad71daa94893025a21b73b416dd3903078be5 SHA1 11a9170ea03990268d409056084415d725c6290b SHA256 0d65166c1d1951e1d0b83e5d221f23f07462b9d8c46ea0d0569f66e35a5229ee
 EBUILD sim4-20030921.ebuild 571 RMD160 e2938219b903c0e8e10babcb5abfaf6dd2cbef89 SHA1 9d869d9fa792ff86d6360d317662d72bc660a81c SHA256 b8fb3eab555c4a36c5ec7d3454393fe3df276fa785d3a60afac9e737b9e102cb
-MD5 befcb01ec0db3e9870bcfde47e22e87b sim4-20030921.ebuild 571
-RMD160 e2938219b903c0e8e10babcb5abfaf6dd2cbef89 sim4-20030921.ebuild 571
-SHA256 b8fb3eab555c4a36c5ec7d3454393fe3df276fa785d3a60afac9e737b9e102cb sim4-20030921.ebuild 571
 MISC ChangeLog 1208 RMD160 aa5f7536b189a8ac2c789349471062e91429bbf9 SHA1 465cd4729a1febe6585dd44c7fa20bcd765222cb SHA256 d2e3140e60a77e2d175d1844ee74fa35e00c126a7501e3cd3c5cd483d711edc8
-MD5 3c1d9247e2e3f1a4e72a81fa3944d7a6 ChangeLog 1208
-RMD160 aa5f7536b189a8ac2c789349471062e91429bbf9 ChangeLog 1208
-SHA256 d2e3140e60a77e2d175d1844ee74fa35e00c126a7501e3cd3c5cd483d711edc8 ChangeLog 1208
 MISC metadata.xml 1132 RMD160 67881658e1e6e7cefb58021bbbe03d23608a4920 SHA1 8077e381d42bd419ba04fa86e1a5d1484b84a990 SHA256 d64a639eb465427952278fe2c829c51010b4c2489a253116172ff8da3bbef818
-MD5 2978f8f894fb870d6e85ea4e1a9c0bd1 metadata.xml 1132
-RMD160 67881658e1e6e7cefb58021bbbe03d23608a4920 metadata.xml 1132
-SHA256 d64a639eb465427952278fe2c829c51010b4c2489a253116172ff8da3bbef818 metadata.xml 1132
-MD5 3f03cd201a49cd9c88fad946120bcabb files/digest-sim4-20030921 211
-RMD160 c4133cafb37b5f6f52b1a9644c762b5b0670a32a files/digest-sim4-20030921 211
-SHA256 ce79a898aa9bf91677be729a4df64d05a2e769385098c4d52c89ee49926cb42e files/digest-sim4-20030921 211
------BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.1 (GNU/Linux)
-
-iD8DBQFGBepF5mJXAu5GbtIRAvUoAJwN6SoQQUfYwOorqOphu6s5oxS59ACeKvsD
-YXSuOopq/xeh+NObRcdb1G8=
-=mEqe
------END PGP SIGNATURE-----
diff --git a/sci-biology/sim4/files/digest-sim4-20030921 b/sci-biology/sim4/files/digest-sim4-20030921
deleted file mode 100644
index 16dc4ed40cc1..000000000000
--- a/sci-biology/sim4/files/digest-sim4-20030921
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 7062ed6e5b5c9a327213c0f9cae7a90a sim4.tar.gz 60814
-RMD160 5acad71daa94893025a21b73b416dd3903078be5 sim4.tar.gz 60814
-SHA256 0d65166c1d1951e1d0b83e5d221f23f07462b9d8c46ea0d0569f66e35a5229ee sim4.tar.gz 60814
diff --git a/sci-biology/staden-bin/Manifest b/sci-biology/staden-bin/Manifest
index b8879897ff34..12f2b578b8e0 100644
--- a/sci-biology/staden-bin/Manifest
+++ b/sci-biology/staden-bin/Manifest
@@ -1,26 +1,4 @@
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
-
 DIST staden-linux-x86-1-7-0.tar.gz 38515727 RMD160 99dd575a9682719cdd8cff35dbd13c5073c61b32 SHA1 31014bb1a453b024fd4e969664da5acf6f7fc169 SHA256 38c96b2df886ebb2407e21bd3c0059d632c2db9a6a7ab707f31c90f6db9e5e0e
 EBUILD staden-bin-1.7.0.ebuild 2907 RMD160 947104dab92595fbe53574bab6ecb06a086c11b6 SHA1 ecb418c3dfc97b7949253bc02dda3aa6de4b092c SHA256 2e5cccc98215a3279318e9bc01a2bfb079882de5839a2016cbb583b7edce5bb1
-MD5 6e2e8a1831804fe872e5cd507a5d1340 staden-bin-1.7.0.ebuild 2907
-RMD160 947104dab92595fbe53574bab6ecb06a086c11b6 staden-bin-1.7.0.ebuild 2907
-SHA256 2e5cccc98215a3279318e9bc01a2bfb079882de5839a2016cbb583b7edce5bb1 staden-bin-1.7.0.ebuild 2907
 MISC ChangeLog 636 RMD160 41de14446b8c9e3cfba4a54b9c0466467a81e25d SHA1 e84c80e0f520a94e01483b6009f2076d0f0188a9 SHA256 b98c568cc87fd4427925e7fe1ff4b8fb6b64ce0acd102433722957ff1da08ecc
-MD5 51bdf54393e7ead94f266932879ec55f ChangeLog 636
-RMD160 41de14446b8c9e3cfba4a54b9c0466467a81e25d ChangeLog 636
-SHA256 b98c568cc87fd4427925e7fe1ff4b8fb6b64ce0acd102433722957ff1da08ecc ChangeLog 636
 MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
-MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
-RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
-SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
-MD5 da06914b2f9e2bb9617639db1578c5e4 files/digest-staden-bin-1.7.0 274
-RMD160 20d65fe0e81a5feed63f41e2925108ab088edf44 files/digest-staden-bin-1.7.0 274
-SHA256 022e1e0c801b0084bd0293706997f38a28fdbd929e83276e12d20ae4711a7a4f files/digest-staden-bin-1.7.0 274
------BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.1 (GNU/Linux)
-
-iD8DBQFGBezS5mJXAu5GbtIRAu+3AJ9Q9diQ3YDMV5xjTi5iq1sJEB7VMQCcCjB9
-lZgsKnEv2vKQLtJ9sGrP25U=
-=Qwhl
------END PGP SIGNATURE-----
diff --git a/sci-biology/staden-bin/files/digest-staden-bin-1.7.0 b/sci-biology/staden-bin/files/digest-staden-bin-1.7.0
deleted file mode 100644
index 42feae6f3546..000000000000
--- a/sci-biology/staden-bin/files/digest-staden-bin-1.7.0
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 57edef52b055c42fbef307673e844677 staden-linux-x86-1-7-0.tar.gz 38515727
-RMD160 99dd575a9682719cdd8cff35dbd13c5073c61b32 staden-linux-x86-1-7-0.tar.gz 38515727
-SHA256 38c96b2df886ebb2407e21bd3c0059d632c2db9a6a7ab707f31c90f6db9e5e0e staden-linux-x86-1-7-0.tar.gz 38515727
diff --git a/sci-biology/stride/Manifest b/sci-biology/stride/Manifest
index e9964704b76d..58cab1cd356a 100644
--- a/sci-biology/stride/Manifest
+++ b/sci-biology/stride/Manifest
@@ -1,17 +1,5 @@
 DIST stride-20060723-update.patch.bz2 5621 RMD160 c5ac88dcff4d074adb18fb09cc39f37e6b95d82a SHA1 a57e7780d2dd44ce53e72dac35ed4d8539a83d10 SHA256 8d48627c294b4efba67acba10fba47b20c0a8d5f7e06c2775a2d7eaaa0aa7b81
 DIST stride.tar.gz 56441 RMD160 6fdcf064f37ce44529446a043b56663af9765054 SHA1 f85cca717c79200bf33fa3a80323ccd9da471669 SHA256 d272700bccd046199f6ea1faed31a2a2662a7d5f13b7663736a1818ac18c87b9
 EBUILD stride-20011129.ebuild 1003 RMD160 775392d19dc194b0f8ab07fd0a1cd9ea81374bd5 SHA1 d0587bec117b9b4f2859ca8837fdeef3ea1f1bee SHA256 b8c519c592d6a290e2a2dd516580d45c4028c320c431c3d5c3bfa72f9bac2e76
-MD5 894982b8f8cde47c23007a475c99026d stride-20011129.ebuild 1003
-RMD160 775392d19dc194b0f8ab07fd0a1cd9ea81374bd5 stride-20011129.ebuild 1003
-SHA256 b8c519c592d6a290e2a2dd516580d45c4028c320c431c3d5c3bfa72f9bac2e76 stride-20011129.ebuild 1003
 MISC ChangeLog 1071 RMD160 d5e709200df9667ad51dc538b6b990ca7ed21919 SHA1 b385a5dcc68636fa354deed50a193511136ac3ab SHA256 8902fd640c18d9099daffb1c796da4e5e9d2c0c099dae06bd50fe368dfbed5c0
-MD5 32052a2aa8d512ab32513d6655addb60 ChangeLog 1071
-RMD160 d5e709200df9667ad51dc538b6b990ca7ed21919 ChangeLog 1071
-SHA256 8902fd640c18d9099daffb1c796da4e5e9d2c0c099dae06bd50fe368dfbed5c0 ChangeLog 1071
 MISC metadata.xml 262 RMD160 346498c47da29f51b223d00c4d2cdf35e69386f6 SHA1 fdf6cc4c581eb3162837bfde3334803445332489 SHA256 732b5b7d88c83d3b0bd0be860f512d9545353e2a2c89b873da8c2217394736c7
-MD5 249fafa8958a02447440c57a9af6a505 metadata.xml 262
-RMD160 346498c47da29f51b223d00c4d2cdf35e69386f6 metadata.xml 262
-SHA256 732b5b7d88c83d3b0bd0be860f512d9545353e2a2c89b873da8c2217394736c7 metadata.xml 262
-MD5 e1831d42da1d317d6054a493e90edee7 files/digest-stride-20011129 488
-RMD160 8d65133583cc451d2f69eabe97c2c2dd011dca29 files/digest-stride-20011129 488
-SHA256 e46f62b283d702bb7f3b7e3c129f4b6e1ccf7dd4c3e376fc90b4256de8af35dd files/digest-stride-20011129 488
diff --git a/sci-biology/stride/files/digest-stride-20011129 b/sci-biology/stride/files/digest-stride-20011129
deleted file mode 100644
index 4bb61f883a77..000000000000
--- a/sci-biology/stride/files/digest-stride-20011129
+++ /dev/null
@@ -1,6 +0,0 @@
-MD5 679bcb7f8db21c9d8a8d24220c6d6d35 stride-20060723-update.patch.bz2 5621
-RMD160 c5ac88dcff4d074adb18fb09cc39f37e6b95d82a stride-20060723-update.patch.bz2 5621
-SHA256 8d48627c294b4efba67acba10fba47b20c0a8d5f7e06c2775a2d7eaaa0aa7b81 stride-20060723-update.patch.bz2 5621
-MD5 bdef3a3e1af8cbdf8fbfefacfa9a929f stride.tar.gz 56441
-RMD160 6fdcf064f37ce44529446a043b56663af9765054 stride.tar.gz 56441
-SHA256 d272700bccd046199f6ea1faed31a2a2662a7d5f13b7663736a1818ac18c87b9 stride.tar.gz 56441
diff --git a/sci-biology/t-coffee/Manifest b/sci-biology/t-coffee/Manifest
index 78fd78ce51d5..347e407ec88d 100644
--- a/sci-biology/t-coffee/Manifest
+++ b/sci-biology/t-coffee/Manifest
@@ -2,31 +2,7 @@ DIST T-COFFEE_distribution_Version_4.96.tar.gz 2863327 RMD160 d6a7722f1fe3b2a8b1
 DIST T-COFFEE_distribution_Version_5.05.tar.gz 2869348 RMD160 edc62c922280ac627089d44997ce859b56950955 SHA1 be137ec323630dc3795deddc71663ece907ef0e8 SHA256 494be7bfca83ee9701fb0fc5aba829fff0592c11173b95f239e39390ca3eeae8
 DIST T-COFFEE_distribution_Version_5.31.tar.gz 2857478 RMD160 95cb261c57fe31b3c26bdac85c10a4609692c2eb SHA1 dde68b94c26bb8727a9a667ecec0cd919ee14dc5 SHA256 43a38a6e9d0dc4bd663704b69c94c3aefd15608e5113703fad8d42f8fdc1a615
 EBUILD t-coffee-4.96.ebuild 1999 RMD160 416bc737b1c260d4df3ea530c3d09cf3c496a9c4 SHA1 76bfced9e81d24a244c0edb5551b5c8aff83eefe SHA256 e970a9c90f832902c9a05c128700a0a1ef8004048b10c7fd7ef667b332e2bd24
-MD5 ab3465f9b6c189385de70add8d67bebc t-coffee-4.96.ebuild 1999
-RMD160 416bc737b1c260d4df3ea530c3d09cf3c496a9c4 t-coffee-4.96.ebuild 1999
-SHA256 e970a9c90f832902c9a05c128700a0a1ef8004048b10c7fd7ef667b332e2bd24 t-coffee-4.96.ebuild 1999
 EBUILD t-coffee-5.05.ebuild 2000 RMD160 7ffc3c8ecd0a3811cd79f567cf2db6da290a1e02 SHA1 2a6c5eaa1de152d77d971cd55e58f19acd7abb4d SHA256 388a66b197f2c06e6d3f3e984903251ad8110cbfec619d703648269a4587894a
-MD5 3945227e250df9f23764b9b27e749e50 t-coffee-5.05.ebuild 2000
-RMD160 7ffc3c8ecd0a3811cd79f567cf2db6da290a1e02 t-coffee-5.05.ebuild 2000
-SHA256 388a66b197f2c06e6d3f3e984903251ad8110cbfec619d703648269a4587894a t-coffee-5.05.ebuild 2000
 EBUILD t-coffee-5.31.ebuild 2001 RMD160 17c0324c272ce4d48fc21bd5719d81f403553436 SHA1 1ce5a0b91e9a8402d9edd449c05b503a90e29f3d SHA256 93cc955b40d3c1bc5e04845f7e0f23393be92831f3128b5e2097b073624b1b25
-MD5 53242a17b78e688d8cb3d283e68325fd t-coffee-5.31.ebuild 2001
-RMD160 17c0324c272ce4d48fc21bd5719d81f403553436 t-coffee-5.31.ebuild 2001
-SHA256 93cc955b40d3c1bc5e04845f7e0f23393be92831f3128b5e2097b073624b1b25 t-coffee-5.31.ebuild 2001
 MISC ChangeLog 3542 RMD160 cf0d4f357dc599720afbc92ec085e9aa808ecc4d SHA1 5a28bbbedb8fb397aabc951f3acbc505fd0f6e20 SHA256 2cd1472a140159118c86772a2980a08b07b44807bdc17db6ff11233300ad7b67
-MD5 ce734842c80cfed77c1a6b36d2c262bd ChangeLog 3542
-RMD160 cf0d4f357dc599720afbc92ec085e9aa808ecc4d ChangeLog 3542
-SHA256 2cd1472a140159118c86772a2980a08b07b44807bdc17db6ff11233300ad7b67 ChangeLog 3542
 MISC metadata.xml 763 RMD160 1163b25c489923e806ccf77dd3b4b5a486da0c28 SHA1 9a6b86bfa165e9b7c0a9b8631990bbfb727fe410 SHA256 8ff6c199eb54e1a49903130ed1aebbe32a0c0b1698aaec2044530c27533270a2
-MD5 d5530b7c0b5defb31d0e1ad80fad02d6 metadata.xml 763
-RMD160 1163b25c489923e806ccf77dd3b4b5a486da0c28 metadata.xml 763
-SHA256 8ff6c199eb54e1a49903130ed1aebbe32a0c0b1698aaec2044530c27533270a2 metadata.xml 763
-MD5 f59bcfecf86c8b4729dc646cfe693047 files/digest-t-coffee-4.96 307
-RMD160 1813cba165d62ee51fcecbcc5f04fe587374a5c9 files/digest-t-coffee-4.96 307
-SHA256 2a6ffaf1bef9217315fb872171f49b5810002e900edb2ecc136d9a9f24503d7c files/digest-t-coffee-4.96 307
-MD5 56d859aa293b43ac7c981e8e10b5dbc0 files/digest-t-coffee-5.05 307
-RMD160 b35e86ce914c46e0f661a07dcd54896e1a92027c files/digest-t-coffee-5.05 307
-SHA256 6caf3d7baff8202f79d5201ee4ab95ccba5cac470e67827c28aa8c7e32c5f9b5 files/digest-t-coffee-5.05 307
-MD5 fe9350ce7cf1797452952868faea7151 files/digest-t-coffee-5.31 307
-RMD160 9d2416b4ea4fc2378132dd1de79d72c4627c7e08 files/digest-t-coffee-5.31 307
-SHA256 06047962fa7669039b77027beb1762cc79e548bbcdc83d81392065fea7efdc50 files/digest-t-coffee-5.31 307
diff --git a/sci-biology/t-coffee/files/digest-t-coffee-4.96 b/sci-biology/t-coffee/files/digest-t-coffee-4.96
deleted file mode 100644
index d6f8c17360de..000000000000
--- a/sci-biology/t-coffee/files/digest-t-coffee-4.96
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 ce40b2654663b7c22c1c8427fb5e32db T-COFFEE_distribution_Version_4.96.tar.gz 2863327
-RMD160 d6a7722f1fe3b2a8b186fad49e8bc136d812b610 T-COFFEE_distribution_Version_4.96.tar.gz 2863327
-SHA256 49181acd69a5723fd5b11f579b1efe685b5289bf187985b25b40c514b0af0213 T-COFFEE_distribution_Version_4.96.tar.gz 2863327
diff --git a/sci-biology/t-coffee/files/digest-t-coffee-5.05 b/sci-biology/t-coffee/files/digest-t-coffee-5.05
deleted file mode 100644
index c72c1bd320c8..000000000000
--- a/sci-biology/t-coffee/files/digest-t-coffee-5.05
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 aee1a51c8a73580de4e1c9c2de140b9b T-COFFEE_distribution_Version_5.05.tar.gz 2869348
-RMD160 edc62c922280ac627089d44997ce859b56950955 T-COFFEE_distribution_Version_5.05.tar.gz 2869348
-SHA256 494be7bfca83ee9701fb0fc5aba829fff0592c11173b95f239e39390ca3eeae8 T-COFFEE_distribution_Version_5.05.tar.gz 2869348
diff --git a/sci-biology/t-coffee/files/digest-t-coffee-5.31 b/sci-biology/t-coffee/files/digest-t-coffee-5.31
deleted file mode 100644
index e226a14a4f80..000000000000
--- a/sci-biology/t-coffee/files/digest-t-coffee-5.31
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 3c5eea83be2c18f45b55a9afac643b25 T-COFFEE_distribution_Version_5.31.tar.gz 2857478
-RMD160 95cb261c57fe31b3c26bdac85c10a4609692c2eb T-COFFEE_distribution_Version_5.31.tar.gz 2857478
-SHA256 43a38a6e9d0dc4bd663704b69c94c3aefd15608e5113703fad8d42f8fdc1a615 T-COFFEE_distribution_Version_5.31.tar.gz 2857478
diff --git a/sci-biology/transfac/Manifest b/sci-biology/transfac/Manifest
index 4309ef22e97f..da8eb3ec6e49 100644
--- a/sci-biology/transfac/Manifest
+++ b/sci-biology/transfac/Manifest
@@ -1,16 +1,4 @@
 DIST transfac32.tar.Z 3346266 RMD160 892164634a80f388ba3c588823576ff0b5582338 SHA1 1f950c981364b03819463536c8d0195fe7351f02 SHA256 cf5c64e6f23037d73562d66f9dde56a767a8f31974a1c0906ec68edea3731a7f
 EBUILD transfac-3.2.ebuild 1071 RMD160 6f83b676458b984507948b1cc094f8b590e696b5 SHA1 c6aa223bc58624b30c007651bcfa5f1f65d6f766 SHA256 684d249c1759dcacdc6b8391eb98998be6365f94aef93f6866766fcfb5a42ed4
-MD5 0897f79067f77ad75088f50e182bcb02 transfac-3.2.ebuild 1071
-RMD160 6f83b676458b984507948b1cc094f8b590e696b5 transfac-3.2.ebuild 1071
-SHA256 684d249c1759dcacdc6b8391eb98998be6365f94aef93f6866766fcfb5a42ed4 transfac-3.2.ebuild 1071
 MISC ChangeLog 1905 RMD160 3de5a3ba85a28827c12d1b3482bb9bb15bd2509f SHA1 494c395289ea98600476731f3d147a0e44fe9b0c SHA256 7096e5ebfc4c52eaa31c1cdcbf09ce334186542500cb164ccc61bd3336338e49
-MD5 36b563ceef34c92140c3fdb438bf0c29 ChangeLog 1905
-RMD160 3de5a3ba85a28827c12d1b3482bb9bb15bd2509f ChangeLog 1905
-SHA256 7096e5ebfc4c52eaa31c1cdcbf09ce334186542500cb164ccc61bd3336338e49 ChangeLog 1905
 MISC metadata.xml 697 RMD160 cfe318ef46ec681df10cadc9f64f8c33a0f6853f SHA1 e08555696ca085bc2996b901f82b99fead6ef6a8 SHA256 76838587f96cdd48b55e0b290fdf46bfb16fa98dfc54e798c854180b1864a9e4
-MD5 3e69272d288453c488a2ac6a6b0f8fd1 metadata.xml 697
-RMD160 cfe318ef46ec681df10cadc9f64f8c33a0f6853f metadata.xml 697
-SHA256 76838587f96cdd48b55e0b290fdf46bfb16fa98dfc54e798c854180b1864a9e4 metadata.xml 697
-MD5 ba9e06034362d55fc3dece4dfa0eda60 files/digest-transfac-3.2 232
-RMD160 7931cff9c4cb50a299056cf4a90f14c158ed8ec1 files/digest-transfac-3.2 232
-SHA256 8600787321452dd53bbed7e0649dfdc5699e884656aa1e9b51b45134840b6b84 files/digest-transfac-3.2 232
diff --git a/sci-biology/transfac/files/digest-transfac-3.2 b/sci-biology/transfac/files/digest-transfac-3.2
deleted file mode 100644
index 2554924c988d..000000000000
--- a/sci-biology/transfac/files/digest-transfac-3.2
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 f65c3263ff45f1f69bc76caa0e0705ec transfac32.tar.Z 3346266
-RMD160 892164634a80f388ba3c588823576ff0b5582338 transfac32.tar.Z 3346266
-SHA256 cf5c64e6f23037d73562d66f9dde56a767a8f31974a1c0906ec68edea3731a7f transfac32.tar.Z 3346266
diff --git a/sci-biology/tree-puzzle/Manifest b/sci-biology/tree-puzzle/Manifest
index 772fbad1019f..4837f67cc6ad 100644
--- a/sci-biology/tree-puzzle/Manifest
+++ b/sci-biology/tree-puzzle/Manifest
@@ -1,16 +1,4 @@
 DIST tree-puzzle-5.2.tar.gz 875142 RMD160 8a69f5ab2ad56a05c0faa6cd02e344c19271bf7a SHA1 fd52a9f04dc871b765d9f7464f68bdb8edc22e37 SHA256 3396d3b80b03b0600afb479dc33f0bd3e5631298337295a4fa454211ac44c3fb
 EBUILD tree-puzzle-5.2.ebuild 1402 RMD160 b0a296b680515410abf6caa061d5202694f5a77d SHA1 f7914250a35bd695cdab4d0594b3171f78085e18 SHA256 458a768b6efbd3c955d6a1238b8dcd697be950b0061c52843f46b637c749d67c
-MD5 50b20abd04c7d67d2be017e191110190 tree-puzzle-5.2.ebuild 1402
-RMD160 b0a296b680515410abf6caa061d5202694f5a77d tree-puzzle-5.2.ebuild 1402
-SHA256 458a768b6efbd3c955d6a1238b8dcd697be950b0061c52843f46b637c749d67c tree-puzzle-5.2.ebuild 1402
 MISC ChangeLog 2501 RMD160 0c48d08ead8e3093bf2f7e9d0f9df4b047fab90e SHA1 b9bf8f4ef6290e627e910cbe00e3565666621cbf SHA256 284d2067c26831a36e54c159d3a3fc4c05c79c2629ea09b5479e7b7dd36abef8
-MD5 122ed2b28548a136e1d9a72b2046c4a0 ChangeLog 2501
-RMD160 0c48d08ead8e3093bf2f7e9d0f9df4b047fab90e ChangeLog 2501
-SHA256 284d2067c26831a36e54c159d3a3fc4c05c79c2629ea09b5479e7b7dd36abef8 ChangeLog 2501
 MISC metadata.xml 1556 RMD160 e152b964d0efb69cca645cb728e56e5cc95ffe16 SHA1 930142f682706a5d8bb8c2b3ee65d25e2e2c346b SHA256 678aaf64be3cfdd3ad9c4c3758c09d754696682b04b6b60fc643c55deb402c9c
-MD5 100f2d2d88cc0554dbc5d0d7bd1ecf7f metadata.xml 1556
-RMD160 e152b964d0efb69cca645cb728e56e5cc95ffe16 metadata.xml 1556
-SHA256 678aaf64be3cfdd3ad9c4c3758c09d754696682b04b6b60fc643c55deb402c9c metadata.xml 1556
-MD5 be10d9e77f3b0ee18ff06f1ec8bdf01c files/digest-tree-puzzle-5.2 247
-RMD160 90931a8b38ca33c8bdb5fa810b8295844d0fa07d files/digest-tree-puzzle-5.2 247
-SHA256 80e8c47c14313e2c6ec7c8478087e936f03c9565acb596b0ef28b269f987a493 files/digest-tree-puzzle-5.2 247
diff --git a/sci-biology/tree-puzzle/files/digest-tree-puzzle-5.2 b/sci-biology/tree-puzzle/files/digest-tree-puzzle-5.2
deleted file mode 100644
index bdb6c577ce3b..000000000000
--- a/sci-biology/tree-puzzle/files/digest-tree-puzzle-5.2
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 20fa9606434ddc789670e681d98fe68f tree-puzzle-5.2.tar.gz 875142
-RMD160 8a69f5ab2ad56a05c0faa6cd02e344c19271bf7a tree-puzzle-5.2.tar.gz 875142
-SHA256 3396d3b80b03b0600afb479dc33f0bd3e5631298337295a4fa454211ac44c3fb tree-puzzle-5.2.tar.gz 875142
diff --git a/sci-biology/treeviewx/Manifest b/sci-biology/treeviewx/Manifest
index d46b38662fe6..e51c90e4cb4d 100644
--- a/sci-biology/treeviewx/Manifest
+++ b/sci-biology/treeviewx/Manifest
@@ -1,24 +1,6 @@
 AUX treeviewx-gcc-3.4.patch 1993 RMD160 1f9bc8764baee71be7490ac80744ae201f22ea1b SHA1 60fe792aea3f8be41ab0efc453dd52d31ea3f783 SHA256 8a6449a278d0e24b7430a327e0e8505fe590b4b6c4d57318534bac72f15457bc
-MD5 c208b90b136cb1d6147844b45c943663 files/treeviewx-gcc-3.4.patch 1993
-RMD160 1f9bc8764baee71be7490ac80744ae201f22ea1b files/treeviewx-gcc-3.4.patch 1993
-SHA256 8a6449a278d0e24b7430a327e0e8505fe590b4b6c4d57318534bac72f15457bc files/treeviewx-gcc-3.4.patch 1993
 AUX treeviewx-wxt.patch 1854 RMD160 9531ffb260bff7d7c26023558db07b7773c790b7 SHA1 e3d56f36477a0b0b7c4d5f3a08cd5f8b0a698f09 SHA256 2881ec0a4644434320d284a4024f18cba765245de99fa7b50c3cc20ab7a37eb4
-MD5 1d7d72d2a9d090385ef5e576f587ef6f files/treeviewx-wxt.patch 1854
-RMD160 9531ffb260bff7d7c26023558db07b7773c790b7 files/treeviewx-wxt.patch 1854
-SHA256 2881ec0a4644434320d284a4024f18cba765245de99fa7b50c3cc20ab7a37eb4 files/treeviewx-wxt.patch 1854
 DIST tv-0.5.1.tar.gz 426745 RMD160 27c92a0f43c59c8988fe2d1410adb6de429e94c9 SHA1 0b0887477ca0d9ded6d0ee8bef014b6208e1fc14 SHA256 118bdbefb3f21636b1ba9da92e1b2029cb4d7d9944f4d02d2deace4ebb14c2d1
 EBUILD treeviewx-0.5.1.ebuild 1258 RMD160 0acc1e95b1cde029523d0a749d3ac03c17475489 SHA1 c37c5ef7a1cca8b27a8b0822fa7f683325d833bb SHA256 71aaebcbfcaed472b6836b685c8c7227ae533dcbcba5dee4af85e9783f85900f
-MD5 f60ded5a8c4c21dc6ba727ce017419c0 treeviewx-0.5.1.ebuild 1258
-RMD160 0acc1e95b1cde029523d0a749d3ac03c17475489 treeviewx-0.5.1.ebuild 1258
-SHA256 71aaebcbfcaed472b6836b685c8c7227ae533dcbcba5dee4af85e9783f85900f treeviewx-0.5.1.ebuild 1258
 MISC ChangeLog 2729 RMD160 8e667b1ad488ad21cfa5faf7b1174942998cce80 SHA1 10bceb03ca16c1245de40e5619e9e1e4fa95dbc3 SHA256 dad3ab323dd74f34db6e39a86e5f9c602fd8275894c73b2997861ff580168e4e
-MD5 68954baa6260d536370c1e6ac0c9d7cd ChangeLog 2729
-RMD160 8e667b1ad488ad21cfa5faf7b1174942998cce80 ChangeLog 2729
-SHA256 dad3ab323dd74f34db6e39a86e5f9c602fd8275894c73b2997861ff580168e4e ChangeLog 2729
 MISC metadata.xml 531 RMD160 106b4a1816bca4933e7841c9509be25678ef3c86 SHA1 fb289150f453d53ab9f7343511fb22e36562373c SHA256 bede76a003b94174e1358e950c77fe3dfeb2df31095eb9cb357e37ef4c83072f
-MD5 28f4cdb441545af65553f6c46228375b metadata.xml 531
-RMD160 106b4a1816bca4933e7841c9509be25678ef3c86 metadata.xml 531
-SHA256 bede76a003b94174e1358e950c77fe3dfeb2df31095eb9cb357e37ef4c83072f metadata.xml 531
-MD5 9ce2886eea180c5d5203761995a6b05a files/digest-treeviewx-0.5.1 226
-RMD160 857500e04ebf1a1c54bfc20c982459bb72d474ee files/digest-treeviewx-0.5.1 226
-SHA256 5b14f084471a2fbe827ab3ae1a78b44c531c83a40c1eaf700d2c1c2884800eed files/digest-treeviewx-0.5.1 226
diff --git a/sci-biology/treeviewx/files/digest-treeviewx-0.5.1 b/sci-biology/treeviewx/files/digest-treeviewx-0.5.1
deleted file mode 100644
index 692fffdb8b7b..000000000000
--- a/sci-biology/treeviewx/files/digest-treeviewx-0.5.1
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 07e1ed8873c5f19ded7294668233bae1 tv-0.5.1.tar.gz 426745
-RMD160 27c92a0f43c59c8988fe2d1410adb6de429e94c9 tv-0.5.1.tar.gz 426745
-SHA256 118bdbefb3f21636b1ba9da92e1b2029cb4d7d9944f4d02d2deace4ebb14c2d1 tv-0.5.1.tar.gz 426745
diff --git a/sci-biology/trnascan-se/Manifest b/sci-biology/trnascan-se/Manifest
index 8de9cc398682..2bb113a076d6 100644
--- a/sci-biology/trnascan-se/Manifest
+++ b/sci-biology/trnascan-se/Manifest
@@ -1,16 +1,4 @@
 DIST trnascan-se-1.23.tar.bz2 482202 RMD160 41180bc008e64258470a241418467b9b97220669 SHA1 2b35e9b63854bb8ceb9fb602582f7de47d15d095 SHA256 a1d18a0b9decf4a93fa6cf02fb5867367729449fc8e47e3749c91678fc1f344a
 EBUILD trnascan-se-1.23-r1.ebuild 1240 RMD160 a5239812fd8dab129267eedd1f6de2debabb9536 SHA1 062e94ed6bb87a21679db1bace440711d34285cf SHA256 93f4989d51a506ef2f80b5ce118f95a74a97ebdb043a356f7e6fc226c1f5839d
-MD5 6443f301e23c2b701598404b7f1aedc0 trnascan-se-1.23-r1.ebuild 1240
-RMD160 a5239812fd8dab129267eedd1f6de2debabb9536 trnascan-se-1.23-r1.ebuild 1240
-SHA256 93f4989d51a506ef2f80b5ce118f95a74a97ebdb043a356f7e6fc226c1f5839d trnascan-se-1.23-r1.ebuild 1240
 MISC ChangeLog 1308 RMD160 91d62cf194297bb632be343013bf26db2a4c36d6 SHA1 f48e85f32e75e9f46334d8e20eafbc85ea3dd2f5 SHA256 996d927a0244092f03262d7f7e631dc995565d4edfe3b5c3f418212213bb93a9
-MD5 af04d0a81611fcbf7e768bc48bc9b964 ChangeLog 1308
-RMD160 91d62cf194297bb632be343013bf26db2a4c36d6 ChangeLog 1308
-SHA256 996d927a0244092f03262d7f7e631dc995565d4edfe3b5c3f418212213bb93a9 ChangeLog 1308
 MISC metadata.xml 505 RMD160 f2fa2c8de86e9ade0dc4f877b1d196ac68b92e5c SHA1 0f12c05690d0dfcb666e902d7993b7ef0775a74e SHA256 dbc8cc4c1391bf4846f2aa70d6598bc4b40a28568d3cb36e0a8ff8941eee9b23
-MD5 6ad88c9ce6796f4a6edcdc994135f94f metadata.xml 505
-RMD160 f2fa2c8de86e9ade0dc4f877b1d196ac68b92e5c metadata.xml 505
-SHA256 dbc8cc4c1391bf4846f2aa70d6598bc4b40a28568d3cb36e0a8ff8941eee9b23 metadata.xml 505
-MD5 edf32bcf41556e1b1b7549c9f3edde53 files/digest-trnascan-se-1.23-r1 253
-RMD160 868091c4b44c9129adacd6adb19b62e7121479c1 files/digest-trnascan-se-1.23-r1 253
-SHA256 e90dced767724a54387a7cf5210e9c9ed59494a8caa01adbb8a3a8896cb8f825 files/digest-trnascan-se-1.23-r1 253
diff --git a/sci-biology/trnascan-se/files/digest-trnascan-se-1.23-r1 b/sci-biology/trnascan-se/files/digest-trnascan-se-1.23-r1
deleted file mode 100644
index 71a344bd9491..000000000000
--- a/sci-biology/trnascan-se/files/digest-trnascan-se-1.23-r1
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 f993cea7fce0e68641360b1799640316 trnascan-se-1.23.tar.bz2 482202
-RMD160 41180bc008e64258470a241418467b9b97220669 trnascan-se-1.23.tar.bz2 482202
-SHA256 a1d18a0b9decf4a93fa6cf02fb5867367729449fc8e47e3749c91678fc1f344a trnascan-se-1.23.tar.bz2 482202
diff --git a/sci-biology/vienna-rna/Manifest b/sci-biology/vienna-rna/Manifest
index fcbd35c4714d..5ed1e89b1388 100644
--- a/sci-biology/vienna-rna/Manifest
+++ b/sci-biology/vienna-rna/Manifest
@@ -1,36 +1,9 @@
 AUX vienna-rna-1.6.5-c-fixes.patch 728 RMD160 5f427bb976200f58599b1878ca7273844b21aac0 SHA1 7089237c787d780d53b92c4c38ba73ec60b81218 SHA256 49955a6244eb3be73f8d2472f3a4f9b8d1f8f92ba11327961b901a2c1f1e24d8
-MD5 12551ebd039dc595be6654d87375b22d files/vienna-rna-1.6.5-c-fixes.patch 728
-RMD160 5f427bb976200f58599b1878ca7273844b21aac0 files/vienna-rna-1.6.5-c-fixes.patch 728
-SHA256 49955a6244eb3be73f8d2472f3a4f9b8d1f8f92ba11327961b901a2c1f1e24d8 files/vienna-rna-1.6.5-c-fixes.patch 728
 DIST ViennaRNA-1.4.tar.gz 483047 RMD160 31ce5f6e3f1adbd0c8e4759c243764523828a258 SHA1 fde493bfeeb443cb427bbe58b0d4daa446771ccf SHA256 8021ebe40d4fdf609fc9ad9aa7525736f69146666b6222d78d1016c20707522f
 DIST ViennaRNA-1.6.1.tar.gz 1149127 RMD160 37e4719e7ca03ced354976fa83f38d5f96776531 SHA1 afb35731c39893b17a21653a96ba5b3e39340934 SHA256 8036b6a562ec898dab4144cb5f18b42ff7c4290875572d05e7059b1ca2d5ddfd
 DIST ViennaRNA-1.6.5.tar.gz 1214312 RMD160 671f9ebd26c1c11db4f19821daea89feac8f2df2 SHA1 12a46718c684bb4f888b41df52a3a8009715ff10 SHA256 70a7bef5d6e67d31ee88089603c18b95e3a544880cddc56e5a04da28cdaa84b9
 EBUILD vienna-rna-1.4.ebuild 2411 RMD160 df875d116e09cb23ae6fbda5d59bf12202584aa2 SHA1 7cbe01e26e40d1fb92d6bece04f1ceba543c42b8 SHA256 db9071a8513e921026a11fcb1a57751dfdece8448e42f07d4b702af1736bf7d6
-MD5 c17be19b856ff5ab5b684528acc33d44 vienna-rna-1.4.ebuild 2411
-RMD160 df875d116e09cb23ae6fbda5d59bf12202584aa2 vienna-rna-1.4.ebuild 2411
-SHA256 db9071a8513e921026a11fcb1a57751dfdece8448e42f07d4b702af1736bf7d6 vienna-rna-1.4.ebuild 2411
 EBUILD vienna-rna-1.6.1.ebuild 1587 RMD160 563cb491bc5c71347eaacd0d093924fbba79afa6 SHA1 5d30247bf97f0cc2197993673dc1d813f27b37e1 SHA256 04308a39ccf800a738a899ff93b1592532dab2886405b90b99815c5e9155bead
-MD5 aef9c18a51a387759b34f06342bb5d9f vienna-rna-1.6.1.ebuild 1587
-RMD160 563cb491bc5c71347eaacd0d093924fbba79afa6 vienna-rna-1.6.1.ebuild 1587
-SHA256 04308a39ccf800a738a899ff93b1592532dab2886405b90b99815c5e9155bead vienna-rna-1.6.1.ebuild 1587
 EBUILD vienna-rna-1.6.5.ebuild 1744 RMD160 1b8d7dc72c02d815a21fc1398865c1d936afaf05 SHA1 e05f78a86fd59fcb13c3e57fe462b93bc6c39b16 SHA256 6e5b9eff1e28e5a0ec47886d743abd1b79909cd2331f87daee75f66dddd9925e
-MD5 3c703e0a65951975078c3d6abb0e3290 vienna-rna-1.6.5.ebuild 1744
-RMD160 1b8d7dc72c02d815a21fc1398865c1d936afaf05 vienna-rna-1.6.5.ebuild 1744
-SHA256 6e5b9eff1e28e5a0ec47886d743abd1b79909cd2331f87daee75f66dddd9925e vienna-rna-1.6.5.ebuild 1744
 MISC ChangeLog 2289 RMD160 352226578ec3e2d6fadaeefe426ebb613ecc8e9f SHA1 fa7a49ddd07a8e280b9eab911c608d31ec3bad96 SHA256 04e84f5d262fa2c1438f7199cb3c6c1c8737f9da9cf09c6f24ce698df5ced095
-MD5 88b1de721d6af322db6c223bbf406f71 ChangeLog 2289
-RMD160 352226578ec3e2d6fadaeefe426ebb613ecc8e9f ChangeLog 2289
-SHA256 04e84f5d262fa2c1438f7199cb3c6c1c8737f9da9cf09c6f24ce698df5ced095 ChangeLog 2289
 MISC metadata.xml 1228 RMD160 8db8df2ec48d6a7e8dd4c592f7f4a9c7f8810cf9 SHA1 e46645ad44f1236a471a0ba79e08e4f6fe752dcb SHA256 7c558ba2568a5ec64654465c4c45784a32c4dccd6adf33518cf1f3daca2acd16
-MD5 3f7b19f43a1d86838c7947446337f2a8 metadata.xml 1228
-RMD160 8db8df2ec48d6a7e8dd4c592f7f4a9c7f8810cf9 metadata.xml 1228
-SHA256 7c558ba2568a5ec64654465c4c45784a32c4dccd6adf33518cf1f3daca2acd16 metadata.xml 1228
-MD5 b3a63d2b3f485213aa60a04566f95b63 files/digest-vienna-rna-1.4 241
-RMD160 296ae4690b623bae89683468490008f96f34427c files/digest-vienna-rna-1.4 241
-SHA256 459b7bbca590c52d3bb60e3279fd55d121a43fb4f655e6e62af475430a597295 files/digest-vienna-rna-1.4 241
-MD5 eb193013e189f83146d7327383271be0 files/digest-vienna-rna-1.6.1 250
-RMD160 caf402e2c2f9d9cbf9182f4c79195bef66f39f53 files/digest-vienna-rna-1.6.1 250
-SHA256 cfbe4a4bc1a18ddbd121ff08e6b67fcaf93a7ca8e28068f4f837a8b53fc3adf0 files/digest-vienna-rna-1.6.1 250
-MD5 f39324f28a684c8edd2c450292e15c1b files/digest-vienna-rna-1.6.5 250
-RMD160 51401de45b9ebc58ab3e1f53b5018d2b803d1b9e files/digest-vienna-rna-1.6.5 250
-SHA256 9c9b6c4cd300347d959b1d649ea6cb78cf38b622a418e78b48c1e61e5c8732c1 files/digest-vienna-rna-1.6.5 250
diff --git a/sci-biology/vienna-rna/files/digest-vienna-rna-1.4 b/sci-biology/vienna-rna/files/digest-vienna-rna-1.4
deleted file mode 100644
index 2dbeefd34be2..000000000000
--- a/sci-biology/vienna-rna/files/digest-vienna-rna-1.4
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 89df828c775783426e7d2db8b2fd42d4 ViennaRNA-1.4.tar.gz 483047
-RMD160 31ce5f6e3f1adbd0c8e4759c243764523828a258 ViennaRNA-1.4.tar.gz 483047
-SHA256 8021ebe40d4fdf609fc9ad9aa7525736f69146666b6222d78d1016c20707522f ViennaRNA-1.4.tar.gz 483047
diff --git a/sci-biology/vienna-rna/files/digest-vienna-rna-1.6.1 b/sci-biology/vienna-rna/files/digest-vienna-rna-1.6.1
deleted file mode 100644
index 2288cb24658a..000000000000
--- a/sci-biology/vienna-rna/files/digest-vienna-rna-1.6.1
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 2fd6e3819c9f35d27ce74d77447880a3 ViennaRNA-1.6.1.tar.gz 1149127
-RMD160 37e4719e7ca03ced354976fa83f38d5f96776531 ViennaRNA-1.6.1.tar.gz 1149127
-SHA256 8036b6a562ec898dab4144cb5f18b42ff7c4290875572d05e7059b1ca2d5ddfd ViennaRNA-1.6.1.tar.gz 1149127
diff --git a/sci-biology/vienna-rna/files/digest-vienna-rna-1.6.5 b/sci-biology/vienna-rna/files/digest-vienna-rna-1.6.5
deleted file mode 100644
index 480a80483521..000000000000
--- a/sci-biology/vienna-rna/files/digest-vienna-rna-1.6.5
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 e03a98e6184a4b17eb071f6f67d7d741 ViennaRNA-1.6.5.tar.gz 1214312
-RMD160 671f9ebd26c1c11db4f19821daea89feac8f2df2 ViennaRNA-1.6.5.tar.gz 1214312
-SHA256 70a7bef5d6e67d31ee88089603c18b95e3a544880cddc56e5a04da28cdaa84b9 ViennaRNA-1.6.5.tar.gz 1214312
diff --git a/sci-biology/wise/Manifest b/sci-biology/wise/Manifest
index abea9806f554..801b2222acc8 100644
--- a/sci-biology/wise/Manifest
+++ b/sci-biology/wise/Manifest
@@ -1,34 +1,6 @@
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
-
 AUX wise-api.tex.patch 2234 RMD160 c1780513680ad00562ba7589bd44ffa86ee996f4 SHA1 16c2b37efc603003448d37de2b67986b86020777 SHA256 31042f660669ea9df9bc608006cd40479e004f5cbb9aed055d3ec58a853c145d
-MD5 6c1b047599122f062a65ad125739936b files/wise-api.tex.patch 2234
-RMD160 c1780513680ad00562ba7589bd44ffa86ee996f4 files/wise-api.tex.patch 2234
-SHA256 31042f660669ea9df9bc608006cd40479e004f5cbb9aed055d3ec58a853c145d files/wise-api.tex.patch 2234
 AUX wise-env 40 RMD160 2ac8408df8a36f789c28d8d55cf892dba78359c5 SHA1 76bce2a14ae2c2afa82e2c537383d4e730dfcb07 SHA256 de6f742147c43b3820ea261fd158647ae1d2d9e8fe562e0b5c4c0d7e878ced36
-MD5 7321fc88d375cef4db1411e6e6c867ab files/wise-env 40
-RMD160 2ac8408df8a36f789c28d8d55cf892dba78359c5 files/wise-env 40
-SHA256 de6f742147c43b3820ea261fd158647ae1d2d9e8fe562e0b5c4c0d7e878ced36 files/wise-env 40
 DIST wise2.2.0.tar.gz 2108151 RMD160 a4292fbfb405d19b628fe5c829d746297e740862 SHA1 77cc08e9cda9416641370c9b45191192fc7cacd3 SHA256 192db34ffa76ef14a9804cc5a7ab72554498284c841f940f8951b4bfae96d780
 EBUILD wise-2.2.0.ebuild 1992 RMD160 08f042a0d66114274fb53e09825e72542a9d8017 SHA1 4b67d463939053e4bffc6888886065af6e222653 SHA256 870d611892d5d9ea940ad1e5ca566dd2edace22850621b353b852451e6edd23c
-MD5 cb75d7d3eb6924151331adcb1dc85af7 wise-2.2.0.ebuild 1992
-RMD160 08f042a0d66114274fb53e09825e72542a9d8017 wise-2.2.0.ebuild 1992
-SHA256 870d611892d5d9ea940ad1e5ca566dd2edace22850621b353b852451e6edd23c wise-2.2.0.ebuild 1992
 MISC ChangeLog 1680 RMD160 fdc4c9a2dbd2678fa753f26df8a66c0f801e1ef6 SHA1 66a305a8f9cd2f5b1838d081f16da6a7808c28f5 SHA256 3ff7cb7e89abf064cb9b94518c3667b4d803436ccbb75677e2c661bb5788b7fb
-MD5 f4f876adcbd393b9893ccdea8d1b1985 ChangeLog 1680
-RMD160 fdc4c9a2dbd2678fa753f26df8a66c0f801e1ef6 ChangeLog 1680
-SHA256 3ff7cb7e89abf064cb9b94518c3667b4d803436ccbb75677e2c661bb5788b7fb ChangeLog 1680
 MISC metadata.xml 165 RMD160 b247a16b6552b292d1249ff4e8ea5060ad2c4372 SHA1 a9f91a3a303f4c85430e21eca09913e1c9426366 SHA256 560c375768c8e164d954d61924f110da785b4771012cb830963eaa267a319132
-MD5 aec0225cc3c4bc9490275e897849b449 metadata.xml 165
-RMD160 b247a16b6552b292d1249ff4e8ea5060ad2c4372 metadata.xml 165
-SHA256 560c375768c8e164d954d61924f110da785b4771012cb830963eaa267a319132 metadata.xml 165
-MD5 4c93bc0d8fb6e6f60096991d470c317d files/digest-wise-2.2.0 232
-RMD160 ff75c61b2fe24031ee9777872e6254140e888d2f files/digest-wise-2.2.0 232
-SHA256 9809ad3161c35ce94a73c205ea93cb0d8e58b652784dd1fb84602e087aa28f4e files/digest-wise-2.2.0 232
------BEGIN PGP SIGNATURE-----
-Version: GnuPG v1.4.4 (GNU/Linux)
-
-iD8DBQFFoAwO5mJXAu5GbtIRAgySAJoCwegS8txwdThIWfMOT+MShDq/qwCfaBye
-zD/bQi72p2Srcdbfou/QdmI=
-=hYFG
------END PGP SIGNATURE-----
diff --git a/sci-biology/wise/files/digest-wise-2.2.0 b/sci-biology/wise/files/digest-wise-2.2.0
deleted file mode 100644
index 7a34670f3cfb..000000000000
--- a/sci-biology/wise/files/digest-wise-2.2.0
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 0584240f77885e37528e99e64535ab60 wise2.2.0.tar.gz 2108151
-RMD160 a4292fbfb405d19b628fe5c829d746297e740862 wise2.2.0.tar.gz 2108151
-SHA256 192db34ffa76ef14a9804cc5a7ab72554498284c841f940f8951b4bfae96d780 wise2.2.0.tar.gz 2108151