Version Bump; drop old

Package-Manager: portage-2.2.18/cvs/Linux x86_64
Manifest-Sign-Key: 0xB9D4F231BD1558AB!

4 files changed, 29 insertions, 48 deletions

diff --git a/sci-chemistry/tm-align/ChangeLog b/sci-chemistry/tm-align/ChangeLog
index 963b68f0014c..e6a95bc963b9 100644
--- a/sci-chemistry/tm-align/ChangeLog
+++ b/sci-chemistry/tm-align/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-chemistry/tm-align
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tm-align/ChangeLog,v 1.7 2015/02/09 12:49:24 blueness Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tm-align/ChangeLog,v 1.8 2015/03/29 13:15:56 jlec Exp $
+
+*tm-align-20140601 (29 Mar 2015)
+
+  29 Mar 2015; Justin Lecher <jlec@gentoo.org> +tm-align-20140601.ebuild,
+  -tm-align-20120124.ebuild, -tm-align-20120707.ebuild:
+  Version Bump; drop old
 
   09 Feb 2015; Anthony G. Basile <blueness@gentoo.org> tm-align-20120707.ebuild,
   tm-align-20130511.ebuild:
diff --git a/sci-chemistry/tm-align/Manifest b/sci-chemistry/tm-align/Manifest
index 51cf230e5da6..a4b1a1e85ce8 100644
--- a/sci-chemistry/tm-align/Manifest
+++ b/sci-chemistry/tm-align/Manifest
@@ -1,29 +1,29 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA256
+Hash: SHA512
 
 AUX CMakeLists.txt 182 SHA256 e6543e2fba46dc09d1892106b1d9c154485ee269d2b88c16a1973605fae44b53 SHA512 1e77edbfb2184e11c09fc2133eb40bd9d4b2fb04a30139134939482f4e817ebfa5c316e8d75a6fd5aa866ef1f6f56d65df924dc41cfb698330943e0bc433948d WHIRLPOOL 370a6b0e2ba20b7c7316aaba34b6dd6962673014fa7d2aee8ae04630b98abb24f5302eca80ea4c92d84fea149c98003d4b5c1ac44266a488cc937f06f51f6192
-DIST TMtools20120124.tar.gz 919534 SHA256 0464557cdcbfb5559b96859f851f938ef63ada8bf990b9a2c4e49ec3659cc7c4 SHA512 5ef9f26f951efc2c07f3731b81c8deb99d78e3c03e13c9088971789675d4837a57c8af1843035353ebdf1e95079251d274554d6ee9c353fc407703a7a656dde6 WHIRLPOOL db48f11351dc62479208d134a56635e1f38667d0535464ae00f2e44255ddb2f09a2fc8dc880012ec4b858493f7528470171f111f1222ab70b9bcf8416a0f531f
-DIST TMtools20120707.tar.gz 928304 SHA256 c6558e67857ceffb3059a892f68a70bc0fad1a91d8f3c38292900af189d5492c SHA512 2c94af7c17a00f7a250b59614fedd753c88d4fa36aea8ac615ed25f09deeb798740b464103fe014820e488fe56f3839d2e591db052230841f2523fbfe5038e3e WHIRLPOOL 443f8d181f7a9b59147ff6120fb7b2ae517b85019389168931a6b28fe443dde3245fb7795dd66f6f1cfbbd175b4b8f61ae2d1a1c75142517cfae152d8008be64
 DIST TMtools20130511.tar.gz 934272 SHA256 8d721481ce481085fe7fc2dde0d374dd7b5f0a6242702c77d194deb7fc8417b7 SHA512 aad15e7d71f9aaab1e7268e5e8b410de8917a9a3a41d5c3ad09e2a4beb8fc8240b78662a0389d2772ebeac9921a79b86bd44316b1ea7d9bbde566a610f7bf5ae WHIRLPOOL e6628255a22022db2a5deef8b6b356a36b588561a7576b571bb0ce3ca030ebe31076f0b4965ccde73f15969eba1c397810115b892cd9e87e97040dcb11fddfab
-EBUILD tm-align-20120124.ebuild 805 SHA256 c8d7f7b69e8518547710e35cb0468f8e81dd56750c1cfa38b2865f98b8f36df7 SHA512 f70d96dd74cecea6d8695ee7e482db7ab4e218a0f8f9ffb97d76bd51d4d4fce8cfa7d25f33e6e76047e380080ca47d51db0e106aca7caa6097810cdf9800a80d WHIRLPOOL ec6a7735ae6c2d66f3a695d57e5a976ff6bdddac83458852c45b17728f11548a0d3691b7a95abaeebb5321e791bc68b5c169903a410dcef18f793bd951557f59
-EBUILD tm-align-20120707.ebuild 822 SHA256 0c6041727cb39cff78df1f3d0703e415aa8e80f6577e626e7263ceef441552e4 SHA512 fa88e1bad1a6af33a66e369103ee1ce7b483b13ece714480b8a5ef7133eab9ec0789d1ac6b141d518d61c9e6c8dadecbe0d1722e2e0de141cb9b184ba9579def WHIRLPOOL 2d45230721383af79dc64a376ab5cc9b7c77f19e238514745485d71a0b645f95dd01b5e8409e81aaecd9301daaa30de2431b80cc4b7152590c6eb39c7fc18231
+DIST TMtools20140601.tar.gz 934391 SHA256 5032f7ab1824c8b2191b4a3667e1405feb6ccf7c900f57632aa506fff8ec1bf5 SHA512 99b90425ff051c836e19225601ddfb1576bec9c8f233aafeba96075f924a3c0892b5b1cfef36254ff5ef468a6dbf64f7fcc9a3ce24a0d869b3c1eb87c0149765 WHIRLPOOL 5ba7d9cb71e3055dff62851c68e127314b9ca70c4bbc39aeba35e5a4b02dc0cffeacb52c6369c90875d8062603c830acf604cfc339bdecfeb3dd6c10015e20de
 EBUILD tm-align-20130511.ebuild 822 SHA256 f9da6048037f84ba673dda29329c5f1e9cac3d76ad1e1d83d6b79bd7a97e16fb SHA512 4da3f1bac2924f647bc6f8ca89dbdcac29d9d0d22012b9f651d6d450606d7d90e55bb1589fd74f7b6a1e4386bccadc425ee7654b4e7c6d368a36640014943283 WHIRLPOOL aece8fda6c2808a98831ea51ead7b2466d30732d983120c68c121c76a7977d495920cae5fa67e9177fc8a1281d2be20e6a00ddd6c0e9c8ded44f6edf5b65fbb8
-MISC ChangeLog 1258 SHA256 90cb9a2534f5a68c3e5b86de51cc2d41dff4d81e1ab89d2d276990a4230d8a25 SHA512 519c47dfaf4ab0152807bfde6399ab399cecb0e219804bb7f65147ebb79351854c3d11d2b18ca4106e612b3279d2da66ab118211e1a8df4f5ba9c90a705877da WHIRLPOOL f5e4b39e9cc28fc387b7dbcb30f7320a733c490f45240dff433e3af76fedaa700f4604979e3e91a9b73a551d64c8e78a9efa5f184f1710d80e20ea0a56ac8c68
+EBUILD tm-align-20140601.ebuild 818 SHA256 153e3778e408e5f1b7d69d4c88b8ca622991255d0c6be6b5eda5aed679e9b949 SHA512 677561ff8445289965ba4b038a99ebe5ec243103ccb98f702e441b5ed6f710953ee4f3fa9dce59604dd3c318f27a8d5583c4725ae1cc4f46de08a692254b61e6 WHIRLPOOL db1f220cb60250b95757f6a9f585c52e71c411f4886516477fdac10f15d9285c2eaef9aed58dcaa2e3539c7273652d7c6985b3b760679e6cdf5975c339d0260d
+MISC ChangeLog 1444 SHA256 9960013a59937ad69643d037c509976db2a430a75e026b9389c101bce9852111 SHA512 bd95548a67784dd2ce01197f8c78dc6188f665c2f5a345ad9a8d046f4bd66a66afc633037c4e00e20234d494bdf70de50635b82ab6747694ec2d554952c937a3 WHIRLPOOL 5e6ee688896855ab7784e74b454a80c67c9de33cea254c56bfe86d3c5656b3f58418be7d40c70803ff03d00b139527883977712c8c51bed1bb0381c86b73810e
 MISC metadata.xml 1257 SHA256 73dc4e2f6cf1c2318fa6c1b70746496268504d29e7eb9285a35c2921362de352 SHA512 120eeef02ef1d867cce7c65ab7b4d3d286502fb36397facf093f3fe77dddf4530ad7858c20e7e58edc87850fc435a0492335b5e18b08b18653b7d4b18e415dd5 WHIRLPOOL 9748dff6b7ea8f3f6387f270b8c93d856031ba3b941ff9eac7f73712e673bc126dffaecc0eb328733bb43fbc7e7989edfe213b6c0f5bbc3db6f08e9f36273e7d
 -----BEGIN PGP SIGNATURE-----
-Version: GnuPG v2
+Version: GnuPG v2.0
 
-iQIcBAEBCAAGBQJU2K16AAoJEJOE+m71LUu6do0P/2UdNJO7GOphiZfznluypuzz
-DJ5xP+aAJQmtWNHQHaViG2OWv7EY5jDMrIkG6NA55CO4n/7bO6wll2tQOb+aXc+I
-0I6+wg69qg2oLfiHWHxTzaF8y/UPm2rUfgdJuyr4S6e67qgRUT3kN09+w94iwIu1
-Yl8T04Lr/K6d1W0aPHaN01lSvecQF+5XF0VjFH7m+WDZNB5RYRxuNP5GUNutj5wH
-UbbgfkyDUFwLCZ203Km1G5wj7cRPYQX8j+l3V417uBQqZeNQIILumUNCk67v+PJZ
-rooe9OeZ/VvljQOpqIC1KQtlCunZdJ1QzHlhGIKuar4+ilGDc24lt3EV4gW3SHNO
-u8817ccktweZmiWF23V1tt8io6YxRHLL107km1l8X0+M9vfrQNb+uF7fHZPMyCwI
-Qi53gaSmni35KZDifjmOZJi3vqCRGsG+9mcjWJ3y+LNFtO3t34SFrFxoVG/lMCzB
-L2lkYwYXT8xG7Sn42KkyzMUPV3gOJU1ky6Bb3EwAeW6GCoZ959idS16fh3AD0jb2
-yIfd8twRoz7occpZmubfks2vCxMvfSgWQ8bCc7SM1hB/sxkuOGwwhJHWS7v0Yz0w
-b+T3CXvjVwhhHJ74FcbHQZ0E2iU1QcMA2zl2KjhSP8Iha9oYuwMnaJC4qljI5HlO
-So1yLXZeUNMCwxvphJfp
-=eksT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+=yYMj
 -----END PGP SIGNATURE-----
diff --git a/sci-chemistry/tm-align/tm-align-20120124.ebuild b/sci-chemistry/tm-align/tm-align-20120124.ebuild
deleted file mode 100644
index 442d939d392e..000000000000
--- a/sci-chemistry/tm-align/tm-align-20120124.ebuild
+++ /dev/null
@@ -1,25 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tm-align/tm-align-20120124.ebuild,v 1.3 2013/02/05 18:30:14 ulm Exp $
-
-EAPI=4
-
-inherit cmake-utils flag-o-matic fortran-2
-
-DESCRIPTION="Quick & Accurate Structural Alignment"
-HOMEPAGE="http://zhanglab.ccmb.med.umich.edu/TM-align/"
-SRC_URI="http://zhanglab.ccmb.med.umich.edu/TM-align/TMtools${PV}.tar.gz"
-
-LICENSE="tm-align"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="static custom-cflags"
-
-S="${WORKDIR}"
-
-src_prepare() {
-	cp "${FILESDIR}"/CMakeLists.txt . || die
-	use static && append-fflags -static && append-ldflags -static
-	# recommended by upstream
-	use custom-cflags || replace-flags -O* -O3 && append-fflags -ffast-math
-}
diff --git a/sci-chemistry/tm-align/tm-align-20120707.ebuild b/sci-chemistry/tm-align/tm-align-20140601.ebuild
index 25d3de23d397..a3a8811a6e53 100644
--- a/sci-chemistry/tm-align/tm-align-20120707.ebuild
+++ b/sci-chemistry/tm-align/tm-align-20140601.ebuild
@@ -1,8 +1,8 @@
 # Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tm-align/tm-align-20120707.ebuild,v 1.4 2015/02/09 12:49:24 blueness Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tm-align/tm-align-20140601.ebuild,v 1.1 2015/03/29 13:15:56 jlec Exp $
 
-EAPI=4
+EAPI=5
 
 inherit cmake-utils flag-o-matic fortran-2