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* Drop deprecated usage of parallel python eclass functionsJustin Lecher2015-10-221-1/+1
* sci-biology/tophat: correct dependency on sci-biology/seqanSergey Popov2015-10-192-2/+2
* sci-biology/seqan: drop SSE instruction check in pkg_pretend(), which sometim...Sergey Popov2015-10-191-12/+3
* sci-biology/seqan: correct dependency on sci-biology/samtoolsSergey Popov2015-10-191-1/+9
* Update remote-idsJustin Lecher2015-10-161-1/+4
* sci-biology/bowtie: Respect CXXJustin Lecher2015-10-142-1/+2
* sci-biology/bowtie: bring back stable bowtie-0.12.8Ted Tanberry2015-10-143-0/+90
* sci-biology/bowtie-2.2.6: Enable 'tbb' USE flag by defaultTed Tanberry2015-10-141-1/+1
* sci-biology/bowtie-1.1.2: Enable 'tbb' USE flag by defaultTed Tanberry2015-10-141-1/+1
* sci-biology/bowtie: remove REQUIRED_USETed Tanberry2015-10-141-1/+7
* sci-biology/bowtie: include descriptive header in patchTed Tanberry2015-10-141-0/+4
* sci-biology/bowtie: do not remove -Wall from CXXFLAGSTed Tanberry2015-10-141-3/+0
* sci-biology/bowtie: Add bowtie2 in SLOT=2Ted Tanberry2015-10-141-0/+54
* sci-biology/bowtie: version bump, SLOT major versionTed Tanberry2015-10-147-133/+79
* fix various encoding corruptionMike Frysinger2015-10-102-2/+2
* Add missing remote-id type=sourceforgeJustin Lecher2015-10-0119-19/+76
* sci-biology/rebase: amd64/ppc/x86 stable, (ALLARCHES policy) wrt bug #561946Agostino Sarubbo2015-10-011-1/+1
* sci-biology/rebase: Version BumpJustin Lecher2015-10-012-0/+47
* sci-biology/rebase: Cleaned oldJustin Lecher2015-10-012-47/+0
* sci-biology/beast-mcmc: Updated dev-java/jdom slot from 1.0 -> 0 for v1William L. Thomson Jr2015-09-294-89/+6
* sci-biology/mothur: Drop oldJustin Lecher2015-09-252-34/+0
* sci-biology/uchime: x86 stable wrt bug #556066Agostino Sarubbo2015-09-251-1/+1
* sci-biology/mothur: x86 stable wrt bug #556066Agostino Sarubbo2015-09-251-1/+1
* sci-biology/samtools: amd64 stable wrt bug #525630Agostino Sarubbo2015-09-241-1/+1
* Update hashes in ManifestJustin Lecher2015-09-2342-63/+63
* sci-biology/flower: remove package masked in bug #553636.Michael Orlitzky2015-09-214-87/+0
* sci-biology/rebase: amd64/ppc/x86 stable, (ALLARCHES policy) wrt bug #559222Agostino Sarubbo2015-09-191-1/+1
* ADd missing remote-id entriesJustin Lecher2015-09-071-0/+3
* sci-biology/bedtools: Fixing HOMEPAGE move due to code.google.com shutdownTobias Klausmann2015-09-012-2/+2
* sci-biology/beast-mcmc: Fixing HOMEPAGE move due to code.google.com shutdownTobias Klausmann2015-09-013-3/+3
* sci-biology/rebase: Version BumpJustin Lecher2015-08-312-0/+47
* sci-biology/emboss: Drop oldJustin Lecher2015-08-273-232/+0
* sci-biology/clustal-omega: Drop oldJustin Lecher2015-08-272-39/+0
* sci-biology/embassy-cbstools: Drop oldJustin Lecher2015-08-272-15/+0
* sci-biology/embassy-domalign: Drop oldJustin Lecher2015-08-272-15/+0
* sci-biology/embassy-domainatrix: Drop oldJustin Lecher2015-08-272-15/+0
* sci-biology/embassy-domsearch: Drop oldJustin Lecher2015-08-272-15/+0
* sci-biology/embassy-emnu: Drop oldJustin Lecher2015-08-272-21/+0
* sci-biology/embassy-esim4: Drop oldJustin Lecher2015-08-272-15/+0
* sci-biology/embassy-hmmer: Drop oldJustin Lecher2015-08-272-23/+0
* sci-biology/embassy-iprscan: Drop oldJustin Lecher2015-08-272-15/+0
* sci-biology/embassy-memenew: Drop obsoleteJustin Lecher2015-08-273-26/+0
* sci-biology/embassy-mira: Drop obsoleteJustin Lecher2015-08-273-20/+0
* sci-biology/embassy-mse: Drop oldJustin Lecher2015-08-272-21/+0
* sci-biology/embassy-phylipnew: Drop oldJustin Lecher2015-08-272-16/+0
* sci-biology/embassy-signature: Drop oldJustin Lecher2015-08-272-15/+0
* sci-biology/embassy-structure: Drop oldJustin Lecher2015-08-272-15/+0
* sci-biology/embassy-topo: Drop oldJustin Lecher2015-08-272-15/+0
* sci-biology/embassy-vienna: Drop oldJustin Lecher2015-08-272-15/+0
* sci-biology/embassy: Drop oldJustin Lecher2015-08-271-33/+0