diff options
Diffstat (limited to 'sci-chemistry/pdb-tools/pdb-tools-0.2.1-r1.ebuild')
-rw-r--r-- | sci-chemistry/pdb-tools/pdb-tools-0.2.1-r1.ebuild | 79 |
1 files changed, 0 insertions, 79 deletions
diff --git a/sci-chemistry/pdb-tools/pdb-tools-0.2.1-r1.ebuild b/sci-chemistry/pdb-tools/pdb-tools-0.2.1-r1.ebuild deleted file mode 100644 index 090b7c041dfe..000000000000 --- a/sci-chemistry/pdb-tools/pdb-tools-0.2.1-r1.ebuild +++ /dev/null @@ -1,79 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -inherit fortran-2 python-single-r1 toolchain-funcs - -MY_PN="pdbTools" - -DESCRIPTION="Tools for manipulating and calculations on wwPDB macromolecule structure files" -HOMEPAGE="https://github.com/harmslab/pdbtools" -SRC_URI="https://${PN}.googlecode.com/files/${MY_PN}_${PV}.tar.gz" - -SLOT="0" -LICENSE="GPL-3" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="" - -REQUIRED_USE="${PYTHON_REQUIRED_USE}" - -RDEPEND="${PYTHON_DEPS}" -DEPEND="${RDEPEND}" - -S="${WORKDIR}"/${MY_PN}_${PV} - -pkg_setup() { - python-single-r1_pkg_setup - fortran-2_pkg_setup -} - -src_prepare() { - sed \ - -e "s:script_dir,\"pdb_data\":\"${EPREFIX}/usr/share/${PN}\",\"pdb_data\":g" \ - -i pdb_sasa.py || die - sed \ - -e "/satk_path =/s:^.*$:satk_path = \"${EPREFIX}/usr/bin\":g" \ - -i pdb_satk.py || die - sed \ - -e 's:> %:>%:g' \ - -i pdb_seq.py || die -} - -src_compile() { - mkdir bin - cd satk - for i in *.f; do - einfo "$(tc-getFC) ${FFLAGS} ${LDFLAGS} ${i} -o ${i/.f}" - $(tc-getFC) ${FFLAGS} -c ${i} -o ${i/.f/.o} || die - $(tc-getFC) ${LDFLAGS} -o ../bin/${i/.f} ${i/.f/.o} || die - sed \ - -e "s:${i/.f}.out:${i/.f}:g" \ - -i ../pdb_satk.py || die - done -} - -src_install() { - local script - insinto /usr/share/${PN} - doins -r pdb_data/peptides - rm -rf pdb_data/peptides || die - - python_domodule helper pdb_data - - python_moduleinto ${PN/-/_} - python_domodule *.py - - for i in pdb_*.py; do - cat > ${i/.py} <<- EOF - #!${EPREFIX}/bin/bash - ${PYTHON} -O "$(python_get_sitedir)/${PN/-/_}/${i}" \$@ - EOF - dobin ${i/.py} - done - - dobin bin/* - dodoc README -} |