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Diffstat (limited to 'sci-chemistry/coot/coot-0.7.ebuild')
| -rw-r--r-- | sci-chemistry/coot/coot-0.7.ebuild | 159 |
1 files changed, 0 insertions, 159 deletions
diff --git a/sci-chemistry/coot/coot-0.7.ebuild b/sci-chemistry/coot/coot-0.7.ebuild deleted file mode 100644 index f5cdfa54b525..000000000000 --- a/sci-chemistry/coot/coot-0.7.ebuild +++ /dev/null @@ -1,159 +0,0 @@ -# Copyright 1999-2014 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI=4 - -PYTHON_DEPEND="2" - -AUTOTOOLS_AUTORECONF="true" - -inherit autotools-utils python toolchain-funcs versionator - -MY_S2_PV=$(replace_version_separator 2 - ${PV}) -MY_S2_P=${PN}-${MY_S2_PV/pre1/pre-1} -MY_S_P=${MY_S2_P}-${PR/r/revision-} -MY_PV=${PV} -MY_P=${PN}-${MY_PV} - -DESCRIPTION="Crystallographic Object-Oriented Toolkit for model building, completion and validation" -HOMEPAGE="http://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/" -SRC_URI=" - http://www.biop.ox.ac.uk/coot/software/source/releases/${MY_P}.tar.gz - test? ( https://dev.gentoo.org/~jlec/distfiles/greg-data-${PV}.tar.gz )" - -SLOT="0" -LICENSE="GPL-3" -KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux" -IUSE="+openmp static-libs test" - -AUTOTOOLS_IN_SOURCE_BUILD=1 - -SCIDEPS=" - >=sci-libs/ccp4-libs-6.1 - sci-libs/clipper - >=sci-libs/coot-data-2 - >=sci-libs/gsl-1.3 - >=sci-libs/mmdb-1.23:0 - sci-libs/ssm - <sci-libs/monomer-db-1 - sci-chemistry/reduce - <sci-chemistry/refmac-5.6 - sci-chemistry/probe" - -XDEPS=" - gnome-base/libgnomecanvas - gnome-base/librsvg:2 - media-libs/libpng - media-libs/freeglut - x11-libs/gtk+:2 - x11-libs/goocanvas:0 - x11-libs/gtkglext" - -SCHEMEDEPS=" - dev-scheme/net-http - dev-scheme/guile-gui - >=dev-scheme/guile-lib-0.1.6 - dev-scheme/guile-www - >=x11-libs/guile-gtk-2.1" - -RDEPEND=" - ${SCIDEPS} - ${XDEPS} - ${SCHEMEDEPS} - dev-python/pygtk:2 - >=dev-libs/gmp-4.2.2-r2 - >=net-misc/curl-7.19.6 - net-dns/libidn" -DEPEND="${RDEPEND} - >=sys-devel/libtool-2.4-r2 - dev-lang/swig - sys-devel/bc - test? ( dev-scheme/greg )" - -S="${WORKDIR}/${MY_P}" - -pkg_setup() { - if use openmp; then - tc-has-openmp || die "Please use an OPENMP capable compiler" - fi - python_set_active_version 2 - python_pkg_setup -} - -PATCHES=( - "${FILESDIR}"/${P}-clipper-config.patch - "${FILESDIR}"/${P}-goocanvas.patch - "${FILESDIR}"/${P}-mmdb-config.patch - "${FILESDIR}"/${P}-ssm.patch - ) - -src_prepare() { - sed \ - -e "s:AM_COOT_SYS_BUILD_TYPE:COOT_SYS_BUILD_TYPE=Gentoo-Linux-$(PYTHON)-gtk2 ; AC_MSG_RESULT([\$COOT_SYS_BUILD_TYPE]); AC_SUBST(COOT_SYS_BUILD_TYPE):g" \ - -i configure.in || die - - autotools-utils_src_prepare -} - -src_configure() { - # All the --with's are used to activate various parts. - # Yes, this is broken behavior. - local myeconfargs=( - --includedir='${prefix}/include/coot' - --with-goocanvas-prefix="${EPREFIX}/usr" - --with-guile - --with-python="${EPREFIX}/usr" - --with-guile-gtk - --with-gtk2 - --with-pygtk - $(use_enable openmp) - ) - autotools-utils_src_configure -} - -src_test() { - source "${EPREFIX}/etc/profile.d/40ccp4.setup.sh" - mkdir "${T}"/coot_test - - export COOT_STANDARD_RESIDUES="${S}/standard-residues.pdb" - export COOT_SCHEME_DIR="${S}/scheme/" - export COOT_RESOURCES_FILE="${S}/cootrc" - export COOT_PIXMAPS_DIR="${S}/pixmaps/" - export COOT_DATA_DIR="${S}/" - export COOT_PYTHON_DIR="${S}/python/" - export PYTHONPATH="${COOT_PYTHON_DIR}:${PYTHONPATH}" - export PYTHONHOME="${EPREFIX}"/usr/ - export CCP4_SCR="${T}"/coot_test/ - export CLIBD_MON="${EPREFIX}/usr/share/ccp4/data/monomers/" - export SYMINFO="${S}/syminfo.lib" - - export COOT_TEST_DATA_DIR="${WORKDIR}"/data/greg-data - - cat > command-line-greg.scm <<- EOF - (use-modules (ice-9 greg)) - (set! greg-tools (list "greg-tests")) - (set! greg-debug #t) - (set! greg-verbose 5) - (let ((r (greg-test-run))) - (if r - (coot-real-exit 0) - (coot-real-exit 1))) - EOF - - einfo "Running test with following paths ..." - einfo "COOT_STANDARD_RESIDUES $COOT_STANDARD_RESIDUES" - einfo "COOT_SCHEME_DIR $COOT_SCHEME_DIR" - einfo "COOT_RESOURCES_FILE $COOT_RESOURCES_FILE" - einfo "COOT_PIXMAPS_DIR $COOT_PIXMAPS_DIR" - einfo "COOT_DATA_DIR $COOT_DATA_DIR" - einfo "COOT_PYTHON_DIR $COOT_PYTHON_DIR" - einfo "PYTHONPATH $PYTHONPATH" - einfo "PYTHONHOME $PYTHONHOME" - einfo "CCP4_SCR ${CCP4_SCR}" - einfo "CLIBD_MON ${CLIBD_MON}" - einfo "SYMINFO ${SYMINFO}" - - "${S}"/src/coot-real --no-graphics --script command-line-greg.scm || die - "${S}"/src/coot-real --no-graphics --script python-tests/coot_unittest.py || die -} |