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Diffstat (limited to 'sci-biology/psipred/psipred-3.3.ebuild')
| -rw-r--r-- | sci-biology/psipred/psipred-3.3.ebuild | 55 |
1 files changed, 55 insertions, 0 deletions
diff --git a/sci-biology/psipred/psipred-3.3.ebuild b/sci-biology/psipred/psipred-3.3.ebuild new file mode 100644 index 000000000000..3727fc29ad25 --- /dev/null +++ b/sci-biology/psipred/psipred-3.3.ebuild @@ -0,0 +1,55 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=4 + +inherit eutils prefix toolchain-funcs versionator + +#MY_P="${PN}$(delete_all_version_separators)" +MY_P="${PN}${PV}" + +DESCRIPTION="Protein Secondary Structure Prediction" +HOMEPAGE="http://bioinf.cs.ucl.ac.uk/psipred/" +SRC_URI=" + http://bioinf.cs.ucl.ac.uk/downloads/${PN}/${MY_P}.tar.gz + test? ( http://bioinfadmin.cs.ucl.ac.uk/downloads/psipred/old/data/tdbdata.tar.gz )" + +LICENSE="psipred" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="test" + +RDEPEND=" + sci-biology/ncbi-tools + || ( sci-biology/update-blastdb sci-biology/ncbi-tools++ )" +DEPEND="" + +S="${WORKDIR}"/${PN} + +src_prepare() { + rm -f bin/* + epatch \ + "${FILESDIR}"/3.1-Makefile.patch \ + "${FILESDIR}"/3.1-path.patch \ + "${FILESDIR}"/3.2-fgets.patch + eprefixify runpsipred* + emake -C src clean +} + +src_compile() { + emake -C src CC=$(tc-getCC) +} + +src_install() { + emake -C src DESTDIR="${D}" install + dobin runpsipred* bin/* BLAST+/runpsipred* + insinto /usr/share/${PN} + doins -r data + dodoc README +} + +pkg_postinst() { + elog "Please use the update_blastdb.pl in order to" + elog "maintain your own local blastdb" +} |