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Diffstat (limited to 'sci-biology/bioperl/bioperl-9999-r1.ebuild')
-rw-r--r--sci-biology/bioperl/bioperl-9999-r1.ebuild75
1 files changed, 75 insertions, 0 deletions
diff --git a/sci-biology/bioperl/bioperl-9999-r1.ebuild b/sci-biology/bioperl/bioperl-9999-r1.ebuild
new file mode 100644
index 000000000000..1cf70db6b533
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+++ b/sci-biology/bioperl/bioperl-9999-r1.ebuild
@@ -0,0 +1,75 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI="5"
+
+inherit perl-module git-2
+
+SUBPROJECTS="+db +network +run"
+
+DESCRIPTION="Perl tools for bioinformatics - Core modules"
+HOMEPAGE="http://www.bioperl.org/"
+SRC_URI=""
+EGIT_REPO_URI="git://github.com/${PN}/${PN}-live.git
+ https://github.com/${PN}/${PN}-live.git"
+
+LICENSE="Artistic GPL-2"
+SLOT="0"
+KEYWORDS=""
+IUSE="-minimal graphviz ${SUBPROJECTS}"
+
+CDEPEND="
+ dev-perl/Data-Stag
+ dev-perl/libwww-perl
+ !minimal? (
+ dev-perl/Ace
+ dev-perl/Bio-ASN1-EntrezGene
+ dev-perl/Spreadsheet-ParseExcel
+ dev-perl/Spreadsheet-WriteExcel
+ >=dev-perl/XML-SAX-0.15
+ dev-perl/Graph
+ dev-perl/SOAP-Lite
+ dev-perl/Array-Compare
+ dev-perl/SVG
+ dev-perl/XML-Simple
+ dev-perl/XML-Parser
+ dev-perl/XML-Twig
+ >=dev-perl/HTML-Parser-3.60
+ >=dev-perl/XML-Writer-0.4
+ dev-perl/Clone
+ dev-perl/XML-DOM
+ dev-perl/set-scalar
+ dev-perl/XML-XPath
+ dev-perl/XML-DOM-XPath
+ dev-perl/Algorithm-Munkres
+ dev-perl/Data-Stag
+ dev-perl/Math-Random
+ dev-perl/PostScript
+ dev-perl/Convert-Binary-C
+ dev-perl/SVG-Graph
+ )
+ graphviz? ( dev-perl/GraphViz )"
+DEPEND="dev-perl/Module-Build
+ ${CDEPEND}"
+RDEPEND="${CDEPEND}"
+PDEPEND="!minimal? ( dev-perl/Bio-ASN1-EntrezGene )
+ db? ( >=sci-biology/bioperl-db-${PV} )
+ network? ( >=sci-biology/bioperl-network-${PV} )
+ run? ( >=sci-biology/bioperl-run-${PV} )"
+
+S="${WORKDIR}/BioPerl-${PV}"
+
+src_configure() {
+ sed -i -e '/add_post_install_script.*symlink_script.pl/d' \
+ -e "/'CPAN' *=> *1.81/d" "${S}/Build.PL" \
+ -e "/'ExtUtils::Manifest' *=> *'1.52'/d" "${S}/Build.PL" \
+ || die
+ if use minimal && use graphviz; then die "USE flags minimal and graphviz cannot be used together"; fi
+ perl-module_src_configure
+}
+
+src_install() {
+ mydoc="AUTHORS BUGS FAQ"
+ perl-module_src_install
+}