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Diffstat (limited to 'sci-biology/bioperl/bioperl-9999-r1.ebuild')
-rw-r--r-- | sci-biology/bioperl/bioperl-9999-r1.ebuild | 75 |
1 files changed, 75 insertions, 0 deletions
diff --git a/sci-biology/bioperl/bioperl-9999-r1.ebuild b/sci-biology/bioperl/bioperl-9999-r1.ebuild new file mode 100644 index 000000000000..1cf70db6b533 --- /dev/null +++ b/sci-biology/bioperl/bioperl-9999-r1.ebuild @@ -0,0 +1,75 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI="5" + +inherit perl-module git-2 + +SUBPROJECTS="+db +network +run" + +DESCRIPTION="Perl tools for bioinformatics - Core modules" +HOMEPAGE="http://www.bioperl.org/" +SRC_URI="" +EGIT_REPO_URI="git://github.com/${PN}/${PN}-live.git + https://github.com/${PN}/${PN}-live.git" + +LICENSE="Artistic GPL-2" +SLOT="0" +KEYWORDS="" +IUSE="-minimal graphviz ${SUBPROJECTS}" + +CDEPEND=" + dev-perl/Data-Stag + dev-perl/libwww-perl + !minimal? ( + dev-perl/Ace + dev-perl/Bio-ASN1-EntrezGene + dev-perl/Spreadsheet-ParseExcel + dev-perl/Spreadsheet-WriteExcel + >=dev-perl/XML-SAX-0.15 + dev-perl/Graph + dev-perl/SOAP-Lite + dev-perl/Array-Compare + dev-perl/SVG + dev-perl/XML-Simple + dev-perl/XML-Parser + dev-perl/XML-Twig + >=dev-perl/HTML-Parser-3.60 + >=dev-perl/XML-Writer-0.4 + dev-perl/Clone + dev-perl/XML-DOM + dev-perl/set-scalar + dev-perl/XML-XPath + dev-perl/XML-DOM-XPath + dev-perl/Algorithm-Munkres + dev-perl/Data-Stag + dev-perl/Math-Random + dev-perl/PostScript + dev-perl/Convert-Binary-C + dev-perl/SVG-Graph + ) + graphviz? ( dev-perl/GraphViz )" +DEPEND="dev-perl/Module-Build + ${CDEPEND}" +RDEPEND="${CDEPEND}" +PDEPEND="!minimal? ( dev-perl/Bio-ASN1-EntrezGene ) + db? ( >=sci-biology/bioperl-db-${PV} ) + network? ( >=sci-biology/bioperl-network-${PV} ) + run? ( >=sci-biology/bioperl-run-${PV} )" + +S="${WORKDIR}/BioPerl-${PV}" + +src_configure() { + sed -i -e '/add_post_install_script.*symlink_script.pl/d' \ + -e "/'CPAN' *=> *1.81/d" "${S}/Build.PL" \ + -e "/'ExtUtils::Manifest' *=> *'1.52'/d" "${S}/Build.PL" \ + || die + if use minimal && use graphviz; then die "USE flags minimal and graphviz cannot be used together"; fi + perl-module_src_configure +} + +src_install() { + mydoc="AUTHORS BUGS FAQ" + perl-module_src_install +} |