1 files changed, 40 insertions, 0 deletions
diff --git a/sci-biology/bfast/bfast-0.7.0a.ebuild b/sci-biology/bfast/bfast-0.7.0a.ebuild
new file mode 100644
index 000000000000..908334354033
--- /dev/null
+++ b/sci-biology/bfast/bfast-0.7.0a.ebuild
@@ -0,0 +1,40 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+AUTOTOOLS_AUTORECONF=true
+
+inherit autotools-utils
+
+DESCRIPTION="Blat-like Fast Accurate Search Tool"
+HOMEPAGE="https://sourceforge.net/projects/bfast/"
+SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+IUSE="test"
+KEYWORDS="~amd64 ~x86"
+
+DEPEND=""
+RDEPEND="dev-perl/XML-Simple"
+
+src_prepare() {
+	sed \
+		-e 's/-m64//' \
+		-e 's/CFLAGS="${default_CFLAGS} ${extended_CFLAGS}"/CFLAGS="${CFLAGS} ${default_CFLAGS} ${extended_CFLAGS}"/' \
+		-e 's:-g -O2::g' \
+		-i configure.ac || die
+	sed \
+		-e 's:. test.definitions.sh:. ./test.definitions.sh:g' \
+		-i tests/*sh || die
+
+	sed \
+		-e '/docdir/d' \
+		-i Makefile.am || die
+
+	use test && AUTOTOOLS_IN_SOURCE_BUILD=1
+
+	autotools-utils_src_prepare
+}