proj/gentoo: Initial commit

This commit represents a new era for Gentoo:
Storing the gentoo-x86 tree in Git, as converted from CVS.

This commit is the start of the NEW history.
Any historical data is intended to be grafted onto this point.

Creation process:
1. Take final CVS checkout snapshot
2. Remove ALL ChangeLog* files
3. Transform all Manifests to thin
4. Remove empty Manifests
5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$
5.1. Do not touch files with -kb/-ko keyword flags.

Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests
X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project
X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration
X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn
X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts
X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration
X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging
X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed

5 files changed, 238 insertions, 0 deletions

diff --git a/sci-mathematics/xmds/Manifest b/sci-mathematics/xmds/Manifest
new file mode 100644
index 000000000000..e0146b2f4798
--- /dev/null
+++ b/sci-mathematics/xmds/Manifest
@@ -0,0 +1,3 @@
+DIST xmds-1.6.5.tar.gz 528593 SHA256 f7128c7c847bafd3a5ed582415cbddd1f31234278d62231faaeb9bec04d6b5ff
+DIST xmds-1.6.6.tar.gz 607585 SHA256 0deb74cf52ea9df58d1a5714d7edd42e027c06ae3eb2cfc12f1fcf477f69f11e
+DIST xmds_doc_20080226.pdf 8093270 SHA256 93ca478d70cfc684cabb24e278181a50f70f4a2b769e8cf7028b6ecc1cb10009
diff --git a/sci-mathematics/xmds/files/xmds-1.6.5-gcc43.patch b/sci-mathematics/xmds/files/xmds-1.6.5-gcc43.patch
new file mode 100644
index 000000000000..766056d5ae51
--- /dev/null
+++ b/sci-mathematics/xmds/files/xmds-1.6.5-gcc43.patch
@@ -0,0 +1,108 @@
+diff -Naurp xmds-1.6.5-orig/source/xmds_integrate_ark45.cc xmds-1.6.5/source/xmds_integrate_ark45.cc
+--- xmds-1.6.5-orig/source/xmds_integrate_ark45.cc	2008-06-28 21:48:21.000000000 +0200
++++ xmds-1.6.5/source/xmds_integrate_ark45.cc	2008-06-28 21:48:57.000000000 +0200
+@@ -35,6 +35,7 @@
+ #include <xmds_simulation.h>
+ #include <xmds_vector.h>
+ #include <cstdlib>
++#include <cstring>
+ 
+ // **************************************************************************
+ // **************************************************************************
+@@ -289,7 +290,7 @@ void xmdsIntegrateARK45::writeTimestepEr
+       fprintf(outfile, "for(unsigned long _i0=0; _i0<_%s_size; _i0++){\n", fieldName);
+     }
+     fprintf(outfile, "   for(unsigned long _i1=0; _i1<_%s_main_ncomponents; _i1++){\n", fieldName);
+-    if (strcmp(typeName, "complex") == 0) {
++    if (std::strcmp(typeName, "complex") == 0) {
+       fprintf(outfile, "    _temp_mod=mod2(_%s_main[_%s_main_index_pointer + _i1]);\n", fieldName, fieldName);
+     }
+     else {
+@@ -347,7 +348,7 @@ void xmdsIntegrateARK45::writeTimestepEr
+     }
+     fprintf(outfile, "   for(unsigned long _i1=0; _i1<_%s_main_ncomponents; _i1++)\n", fieldName);
+ 
+-    if (strcmp(typeName, "complex") == 0) {
++    if (std::strcmp(typeName, "complex") == 0) {
+       fprintf(outfile, "       if(mod2(_%s_main[_%s_main_index_pointer + _i1])>_peak[_i1]){\n", fieldName, fieldName);
+       fprintf(outfile, "            _temp_error=mod(_%s_main[_%s_main_index_pointer + _i1]-_checkfield[_%s_main_index_pointer + _i1])/(mod(_%s_main[_%s_main_index_pointer + _i1])+1e-20);\n", fieldName, fieldName, fieldName, fieldName, fieldName);
+     }
+@@ -364,7 +365,7 @@ void xmdsIntegrateARK45::writeTimestepEr
+   else{ // if ndims==0
+     fprintf(outfile, "   for(unsigned long _i1=0; _i1<_%s_main_ncomponents; _i1++){\n", fieldName);
+ 
+-    if (strcmp(typeName, "complex") == 0) {
++    if (std::strcmp(typeName, "complex") == 0) {
+       fprintf(outfile, "       _temp_error=mod(_%s_main[_i1]-_checkfield[_i1])/(mod(_%s_main[_i1])+1e-20);\n", fieldName, fieldName);
+     }
+     else{
+diff -Naurp xmds-1.6.5-orig/source/xmds_integrate_ark89.cc xmds-1.6.5/source/xmds_integrate_ark89.cc
+--- xmds-1.6.5-orig/source/xmds_integrate_ark89.cc	2008-06-28 21:48:21.000000000 +0200
++++ xmds-1.6.5/source/xmds_integrate_ark89.cc	2008-06-28 21:48:57.000000000 +0200
+@@ -35,6 +35,7 @@
+ #include <xmds_simulation.h>
+ #include <xmds_vector.h>
+ #include <cstdlib>
++#include <cstring>
+ 
+ // **************************************************************************
+ // **************************************************************************
+@@ -284,7 +285,7 @@ void xmdsIntegrateARK89::writeTimestepEr
+       fprintf(outfile, "for (unsigned long _i0=0; _i0<_%s_size; _i0++){\n", fieldName);
+     }
+     fprintf(outfile, "   for (unsigned long _i1=0; _i1<_%s_main_ncomponents; _i1++){\n", fieldName);
+-    if (strcmp(typeName, "complex") == 0) {
++    if (std::strcmp(typeName, "complex") == 0) {
+       fprintf(outfile, "    _temp_mod=mod2(_%s_main[_%s_main_index_pointer + _i1]);\n", fieldName, fieldName);
+     }
+     else {
+@@ -334,7 +335,7 @@ void xmdsIntegrateARK89::writeTimestepEr
+     }
+     fprintf(outfile, "   for (unsigned long _i1=0; _i1<_%s_main_ncomponents; _i1++)\n", fieldName);
+ 
+-    if (strcmp(typeName, "complex") == 0) {
++    if (std::strcmp(typeName, "complex") == 0) {
+       fprintf(outfile, "       if (mod2(_%s_main[_%s_main_index_pointer + _i1])>_peak[_i1]){\n", fieldName, fieldName);
+       fprintf(outfile, "            _temp_error=mod(_%s_main[_%s_main_index_pointer + _i1]-_checkfield[_%s_main_index_pointer + _i1])/(mod(_%s_main[_%s_main_index_pointer + _i1])+1e-20);\n", fieldName, fieldName, fieldName, fieldName, fieldName);
+     }
+@@ -352,7 +353,7 @@ void xmdsIntegrateARK89::writeTimestepEr
+ 
+     fprintf(outfile, "   for (unsigned long _i1=0; _i1<_%s_main_ncomponents; _i1++){\n", fieldName);
+ 
+-    if (strcmp(typeName, "complex") == 0){
++    if (std::strcmp(typeName, "complex") == 0){
+       fprintf(outfile, "       _temp_error=mod(_%s_main[_i1]-_checkfield[_i1])/(mod(_%s_main[_i1])+1e-20);\n", fieldName, fieldName);
+     }
+     else{
+diff -Naurp xmds-1.6.5-orig/source/xmds_simulation.h xmds-1.6.5/source/xmds_simulation.h
+--- xmds-1.6.5-orig/source/xmds_simulation.h	2008-06-28 21:48:21.000000000 +0200
++++ xmds-1.6.5/source/xmds_simulation.h	2008-06-28 21:48:57.000000000 +0200
+@@ -40,6 +40,8 @@
+ #include <xmds_sequence.h>
+ #include <xmds_globals.h>
+ 
++#include <string>
++
+ // *****************************************************************************
+ // *****************************************************************************
+ //                              xmdsSimulation
+diff -Naurp xmds-1.6.5-orig/source/xsil2graphics.cc xmds-1.6.5/source/xsil2graphics.cc
+--- xmds-1.6.5-orig/source/xsil2graphics.cc	2008-06-28 21:48:21.000000000 +0200
++++ xmds-1.6.5/source/xsil2graphics.cc	2008-06-28 21:48:57.000000000 +0200
+@@ -40,6 +40,7 @@
+ #include <xsil_field.h>
+ #include <getopt_xmds.h>
+ #include <iostream>
++#include <cstring>
+ 
+ // **********************************************************************
+ 
+@@ -306,7 +307,7 @@ int main(
+ 
+     const DOMString *mgName = nextElement->getAttribute("Name");
+     int mgNumber = i+1;
+-    if (strcmp("breakpoint", mgName->c_str()) == 0) {
++    if (std::strcmp("breakpoint", mgName->c_str()) == 0) {
+       mgNumber = 1;
+     }
+     else {
diff --git a/sci-mathematics/xmds/metadata.xml b/sci-mathematics/xmds/metadata.xml
new file mode 100644
index 000000000000..607ce9407204
--- /dev/null
+++ b/sci-mathematics/xmds/metadata.xml
@@ -0,0 +1,18 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<herd>sci</herd>
+	<maintainer>
+		<email>tomka@gentoo.org</email>
+		<name>Thomas Kahle</name>
+	</maintainer>
+	<longdescription lang="en">
+XMDS is a code generator that integrates differential equations (ODEs, PDEs and
+SDEs are all supported).  The system of equations to be integrated is specified
+in a XML file, which XMDS then uses to generate a C++ integrator.  The code can
+autamatically take advantage of MPI and FFTW.
+	</longdescription>
+	<upstream>
+		<remote-id type="sourceforge">xmds</remote-id>
+	</upstream>
+</pkgmetadata>
diff --git a/sci-mathematics/xmds/xmds-1.6.5.ebuild b/sci-mathematics/xmds/xmds-1.6.5.ebuild
new file mode 100644
index 000000000000..4ddb29d68b82
--- /dev/null
+++ b/sci-mathematics/xmds/xmds-1.6.5.ebuild
@@ -0,0 +1,58 @@
+# Copyright 1999-2008 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+inherit eutils
+
+doc_ver=20080226
+
+DESCRIPTION="XMDS - The eXtensible Multi-Dimensional Simulator"
+HOMEPAGE="http://www.xmds.org"
+SRC_URI="mirror://sourceforge/xmds/${P}.tar.gz
+	 doc? ( mirror://sourceforge/xmds/xmds_doc_${doc_ver}.pdf )"
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="amd64 x86"
+IUSE="doc examples mpi threads"
+
+DEPEND="sci-libs/fftw
+		mpi? ( virtual/mpi )"
+
+src_unpack() {
+	unpack ${P}.tar.gz
+	cd "${S}"
+
+	epatch "${FILESDIR}"/${PN}-1.6.5-gcc43.patch
+	touch "${S}/source/version.h"
+
+	# Fix broken installation of sample scripts.
+	sed -i -e 's/install-data-am: install-dist_doc_examplesDATA install-man/install-data-am: install-man/' Makefile.in
+}
+
+src_compile() {
+	local my_opts=""
+
+	if has_version "=sci-libs/fftw-3*" ; then
+		my_opts="${my_opts} --enable-fftw3"
+	fi
+
+	econf \
+		$(use_enable mpi) \
+		$(use_enable threads) \
+		${my_opts} || die
+	emake || die
+}
+
+src_install() {
+	make DESTDIR="${D}" install || die
+
+	if use doc; then
+		insinto /usr/share/doc/${PF}
+		doins "${DISTDIR}/xmds_doc_${doc_ver}.pdf"
+	fi
+
+	if use examples; then
+		insinto /usr/share/doc/${PF}/examples
+		doins examples/*
+	fi
+}
diff --git a/sci-mathematics/xmds/xmds-1.6.6.ebuild b/sci-mathematics/xmds/xmds-1.6.6.ebuild
new file mode 100644
index 000000000000..9d3e48b854d2
--- /dev/null
+++ b/sci-mathematics/xmds/xmds-1.6.6.ebuild
@@ -0,0 +1,51 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+inherit eutils
+
+doc_ver=20080226
+
+DESCRIPTION="XMDS - The eXtensible Multi-Dimensional Simulator"
+HOMEPAGE="http://www.xmds.org"
+SRC_URI="mirror://sourceforge/xmds/${P}.tar.gz
+	 doc? ( mirror://sourceforge/xmds/xmds_doc_${doc_ver}.pdf )"
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="amd64 x86"
+IUSE="doc examples mpi threads"
+
+DEPEND="sci-libs/fftw
+		mpi? ( virtual/mpi )"
+
+src_compile() {
+	local my_opts=""
+
+	if has_version "=sci-libs/fftw-3*" ; then
+		my_opts="${my_opts} --enable-fftw3"
+	fi
+
+	econf \
+		$(use_enable mpi) \
+		$(use_enable threads) \
+		${my_opts} || die
+	emake || die
+}
+
+src_install() {
+	make DESTDIR="${D}" install || die
+
+	if use doc; then
+		insinto /usr/share/doc/${PF}
+		doins "${DISTDIR}/xmds_doc_${doc_ver}.pdf"
+	fi
+
+	if use examples; then
+		insinto /usr/share/doc/${PF}/examples
+		for i in "${D}"/usr/share/doc/${PN}/examples/* ; do
+			doins "$i"
+		done
+	fi
+
+	rm -rf "${D}/usr/share/doc/${PN}"
+}