proj/gentoo: Initial commit

This commit represents a new era for Gentoo:
Storing the gentoo-x86 tree in Git, as converted from CVS.

This commit is the start of the NEW history.
Any historical data is intended to be grafted onto this point.

Creation process:
1. Take final CVS checkout snapshot
2. Remove ALL ChangeLog* files
3. Transform all Manifests to thin
4. Remove empty Manifests
5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$
5.1. Do not touch files with -kb/-ko keyword flags.

Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests
X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project
X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration
X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn
X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts
X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration
X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging
X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed

7 files changed, 135 insertions, 0 deletions

diff --git a/sci-libs/mmdb/Manifest b/sci-libs/mmdb/Manifest
new file mode 100644
index 000000000000..73c72e57e088
--- /dev/null
+++ b/sci-libs/mmdb/Manifest
@@ -0,0 +1,3 @@
+DIST mmdb-1.24.tar.gz 681051 SHA256 40c56611a907518afcd6fded8b13a71f9f4fe951d7bb7692e5d5720b0c887dc9 SHA512 d9b5161da8731b6dcafedce55405deb7b9f894883224cf703b0071f613e285a1045858347e666541a7c042c244dcb45936a5c605cc97787c5ac1e857b6451c70 WHIRLPOOL da04442fea5af258cd8647301aaa972e86180ed5979b36cc33141a945b3188ee27580947150d959195e60a8c73085436e8ad48361899cbb8aef0d74f9fa5ea8f
+DIST mmdb-1.25.5.tar.gz 732911 SHA256 44c614e2fa24aa492f2aa1852d2d12f440f5b1de35441cdba131db941ea3db4d SHA512 19784f119422e176ff97c0f40256815584ddf2156570593047125ffaf509c961840619799ce20c43efb330d22f068f96c061d31aa5bc5851f538da1742152ba0 WHIRLPOOL c6e5792a6f5456771da711a8d6f07d2fbfb6cc6e59aaab01176d63c2e29552e14dd41be85ae29800bbd26fde9ab76ad455a4d95e33c0faf7e5eb1d0f00e76867
+DIST mmdb2-2.0.1.tar.gz 721759 SHA256 6df04205747ae35cd62edc9649ab0187f902a56fb16f355cbdbdc7ca3e14b6bd SHA512 00465204aa2b76867f805259d25653d48e0e4fe5eabb3929b86a9e3ae8d88345737ca187cfd21dc6c2808e6e8da9c9d61c11be2f587e733390bc69e5ef87b7cd WHIRLPOOL ab78e08739467bb62703f91abc37a6583cc189e0b90dca2bef4fa825a3f8544dcad5c914683a2bfa4502b016e6c958e6ca0597ceefddfa5b99078108c920edfa
diff --git a/sci-libs/mmdb/files/mmdb-1.25.5-include-path.patch b/sci-libs/mmdb/files/mmdb-1.25.5-include-path.patch
new file mode 100644
index 000000000000..52189f0a32f0
--- /dev/null
+++ b/sci-libs/mmdb/files/mmdb-1.25.5-include-path.patch
@@ -0,0 +1,16 @@
+ mmdb.pc.in | 2 +-
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+
+diff --git a/mmdb.pc.in b/mmdb.pc.in
+index dd654a4..b3c28a9 100644
+--- a/mmdb.pc.in
++++ b/mmdb.pc.in
+@@ -1,7 +1,7 @@
+ prefix=@prefix@
+ exec_prefix=@exec_prefix@
+ libdir=@libdir@
+-includedir=@includedir@
++includedir=@includedir@/mmdb
+ 
+ Name: mmdb
+ Description: Macromolecular coordinate library
diff --git a/sci-libs/mmdb/metadata.xml b/sci-libs/mmdb/metadata.xml
new file mode 100644
index 000000000000..19fd943195bb
--- /dev/null
+++ b/sci-libs/mmdb/metadata.xml
@@ -0,0 +1,8 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-chemistry</herd>
+  <upstream>
+    <remote-id type="launchpad">mmdb</remote-id>
+  </upstream>
+</pkgmetadata>
diff --git a/sci-libs/mmdb/mmdb-1.24.ebuild b/sci-libs/mmdb/mmdb-1.24.ebuild
new file mode 100644
index 000000000000..052ae3eea43e
--- /dev/null
+++ b/sci-libs/mmdb/mmdb-1.24.ebuild
@@ -0,0 +1,45 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=4
+
+inherit autotools-utils
+
+DESCRIPTION="The Coordinate Library, designed to assist CCP4 developers in working with coordinate files"
+HOMEPAGE="http://launchpad.net/mmdb/"
+SRC_URI="
+	http://www.ysbl.york.ac.uk/~emsley/software/${P}.tar.gz
+	http://launchpad.net/mmdb/1.23/${PV}/+download/${P}.tar.gz"
+
+LICENSE="GPL-2 LGPL-3"
+SLOT="0"
+KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos"
+IUSE="static-libs"
+
+DEPEND="!<sci-libs/ccp4-libs-6.1.3"
+RDEPEND=""
+
+src_install() {
+	autotools-utils_src_install
+
+	# create missing mmdb.pc
+	cat >> "${T}"/mmdb.pc <<- EOF
+	prefix=${EPREFIX}/usr
+	exec_prefix=${EPREFIX}/usr
+	libdir=${EPREFIX}/usr/$(get_libdir)
+	includedir=${EPREFIX}/usr/include/mmdb
+
+	Name: ${PN}
+	Description: Macromolecular coordinate library
+	Version: ${PV}
+	Requires:
+	Conflicts:
+	Libs: -L${EPREFIX}/usr/$(get_libdir) -lmmdb
+	Cflags: -I${EPREFIX}/usr/include/mmdb
+
+	EOF
+
+	insinto /usr/$(get_libdir)/pkgconfig
+	doins "${T}"/mmdb.pc
+}
diff --git a/sci-libs/mmdb/mmdb-1.25.5-r1.ebuild b/sci-libs/mmdb/mmdb-1.25.5-r1.ebuild
new file mode 100644
index 000000000000..7a425b79b275
--- /dev/null
+++ b/sci-libs/mmdb/mmdb-1.25.5-r1.ebuild
@@ -0,0 +1,21 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+inherit autotools-utils
+
+DESCRIPTION="The Coordinate Library, designed to assist CCP4 developers in working with coordinate files"
+HOMEPAGE="http://launchpad.net/mmdb/"
+SRC_URI="ftp://ftp.ccp4.ac.uk/opensource/${P}.tar.gz"
+
+LICENSE="GPL-2 LGPL-3"
+SLOT="0"
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos"
+IUSE="static-libs"
+
+DEPEND="!<sci-libs/ccp4-libs-6.1.3"
+RDEPEND=""
+
+PATCHES=( "${FILESDIR}"/${P}-include-path.patch )
diff --git a/sci-libs/mmdb/mmdb-1.25.5.ebuild b/sci-libs/mmdb/mmdb-1.25.5.ebuild
new file mode 100644
index 000000000000..210d0039c6dc
--- /dev/null
+++ b/sci-libs/mmdb/mmdb-1.25.5.ebuild
@@ -0,0 +1,19 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+inherit autotools-utils
+
+DESCRIPTION="The Coordinate Library, designed to assist CCP4 developers in working with coordinate files"
+HOMEPAGE="http://launchpad.net/mmdb/"
+SRC_URI="ftp://ftp.ccp4.ac.uk/opensource/${P}.tar.gz"
+
+LICENSE="GPL-2 LGPL-3"
+SLOT="0"
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos"
+IUSE="static-libs"
+
+DEPEND="!<sci-libs/ccp4-libs-6.1.3"
+RDEPEND=""
diff --git a/sci-libs/mmdb/mmdb-2.0.1.ebuild b/sci-libs/mmdb/mmdb-2.0.1.ebuild
new file mode 100644
index 000000000000..7c8bc513f1d0
--- /dev/null
+++ b/sci-libs/mmdb/mmdb-2.0.1.ebuild
@@ -0,0 +1,23 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+inherit autotools-utils
+
+MY_P="${PN}2-${PV}"
+
+DESCRIPTION="The Coordinate Library, designed to assist CCP4 developers in working with coordinate files"
+HOMEPAGE="http://launchpad.net/mmdb/"
+SRC_URI="ftp://ftp.ccp4.ac.uk/opensource/${MY_P}.tar.gz"
+
+LICENSE="GPL-2 LGPL-3"
+SLOT="2"
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos"
+IUSE="static-libs"
+
+DEPEND="!<sci-libs/ccp4-libs-6.1.3"
+RDEPEND=""
+
+S="${WORKDIR}"/${MY_P}