sci-chemistry/ball: remove last rited package

Signed-off-by: Mikle Kolyada <zlogene@gentoo.org>

4 files changed, 0 insertions, 492 deletions

diff --git a/sci-chemistry/ball/Manifest b/sci-chemistry/ball/Manifest
deleted file mode 100644
index 71590f52041b..000000000000
--- a/sci-chemistry/ball/Manifest
+++ /dev/null
@@ -1 +0,0 @@
-DIST ball-1.5.0_pre20180419.tar.gz 37577697 BLAKE2B 44db256dad4703115ca381c4bc7f8393657d9d205b78c9ed55328769129dc38a2898d838bea2beb2e1e5e25184944a5724dd808917928f79c41b8216d98a6677 SHA512 a5cf9680468636c6b3de950f058d1bedb9c2d9ef7b5ba1af60e4b79fab3e6bae9cd814ec3238703075ae66c5a637d1ba8281ce7f11ac842133af91c000c983c3
diff --git a/sci-chemistry/ball/ball-1.5.0_pre20180419.ebuild b/sci-chemistry/ball/ball-1.5.0_pre20180419.ebuild
deleted file mode 100644
index b4d49d1fb14b..000000000000
--- a/sci-chemistry/ball/ball-1.5.0_pre20180419.ebuild
+++ /dev/null
@@ -1,100 +0,0 @@
-# Copyright 1999-2018 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-PYTHON_COMPAT=( python2_7 )
-COMMIT=e80b5e2021a72faa36bf9e35207998d4590f2cf4
-inherit cmake-utils python-single-r1
-
-DESCRIPTION="Biochemical Algorithms Library"
-HOMEPAGE="https://github.com/BALL-Project/ball"
-SRC_URI="https://github.com/BALL-Project/${PN}/archive/${COMMIT}.tar.gz -> ${P}.tar.gz"
-
-SLOT="0"
-LICENSE="LGPL-2 fftw? ( GPL-3 ) openbabel? ( GPL-3 )"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="cuda doc +fftw +gui lpsolve mpi openbabel +python svm test threads webengine"
-
-REQUIRED_USE="
-	python? ( ${PYTHON_REQUIRED_USE} )
-	threads? ( fftw )
-	webengine? ( gui )
-"
-
-RDEPEND="
-	dev-cpp/eigen:3
-	dev-libs/boost:=
-	dev-qt/qtcore:5
-	dev-qt/qtnetwork:5
-	dev-qt/qtxml:5
-	media-libs/glew:0=
-	virtual/opengl
-	x11-libs/libX11
-	cuda? ( dev-util/nvidia-cuda-toolkit )
-	fftw? ( sci-libs/fftw:3.0=[threads?] )
-	gui? (
-		dev-qt/qtgui:5
-		dev-qt/qtopengl:5
-		dev-qt/qtprintsupport:5
-		dev-qt/qttest:5
-		dev-qt/qtwidgets:5
-	)
-	lpsolve? ( sci-mathematics/lpsolve )
-	mpi? ( virtual/mpi )
-	openbabel? ( sci-chemistry/openbabel:= )
-	python? ( ${PYTHON_DEPS} )
-	svm? ( sci-libs/libsvm:= )
-	webengine? (
-		dev-qt/qtwebchannel:5
-		dev-qt/qtwebengine:5[widgets]
-	)
-"
-DEPEND="${RDEPEND}
-	sys-devel/bison
-	virtual/yacc
-	doc? ( app-doc/doxygen[dot] )
-	gui? ( dev-qt/linguist-tools:5 )
-	python? ( dev-python/sip )
-"
-
-S="${WORKDIR}"/${PN}-${COMMIT}
-
-PATCHES=( "${FILESDIR}"/${PN}-1.5.0-gnuinstalldirs.patch )
-
-RESTRICT="test"
-
-pkg_setup() {
-	use python && python-single-r1_pkg_setup
-}
-
-src_configure() {
-	local mycmakeargs=(
-		-DUPDATE_TRANSLATIONS=ON
-		-DCMAKE_DISABLE_FIND_PACKAGE_LATEX=ON
-		-DCMAKE_INSTALL_DOCDIR=/usr/share/doc/${PF}
-		-DUSE_CUDA=$(usex cuda)
-		-DCMAKE_DISABLE_FIND_PACKAGE_Doxygen=$(usex !doc)
-		-DCMAKE_DISABLE_FIND_PACKAGE_FFTW=$(usex !fftw)
-		-DUSE_LPSOLVE=$(usex lpsolve)
-		-DUSE_MPI=$(usex mpi)
-		-DREQUIRE_MPI=$(usex mpi)
-		-DCMAKE_DISABLE_FIND_PACKAGE_OpenBabel2=$(usex !openbabel)
-		-DBALL_PYTHON_SUPPORT=$(usex python)
-		-DBALL_HAS_VIEW=$(usex gui)
-		-DUSE_LIBSVM=$(usex svm)
-		-DUSE_FFTW_THREADS=$(usex threads)
-		-DUSE_QTWEBENGINE=$(usex webengine)
-	)
-
-	if use fftw || use openbabel; then
-		mycmakeargs+=( -DBALL_LICENSE=GPL )
-	fi
-
-	cmake-utils_src_configure
-}
-
-src_compile() {
-	cmake-utils_src_compile
-	use test && cmake-utils_src_make build_tests
-}
diff --git a/sci-chemistry/ball/files/ball-1.5.0-gnuinstalldirs.patch b/sci-chemistry/ball/files/ball-1.5.0-gnuinstalldirs.patch
deleted file mode 100644
index f9fedc58bb6f..000000000000
--- a/sci-chemistry/ball/files/ball-1.5.0-gnuinstalldirs.patch
+++ /dev/null
@@ -1,355 +0,0 @@
-From a8cade5ed7090c704aed53871fb664a0fe07af54 Mon Sep 17 00:00:00 2001
-From: Andreas Sturmlechner <andreas.sturmlechner@gmail.com>
-Date: Sat, 21 Apr 2018 20:07:09 +0200
-Subject: [PATCH 1/3] Use GNUInstallDirs
-
----
- CMakeLists.txt | 30 ++++++++++++++++--------------
- 1 file changed, 16 insertions(+), 14 deletions(-)
-
-diff --git a/CMakeLists.txt b/CMakeLists.txt
-index be57fe90c..1a54446fb 100644
---- a/CMakeLists.txt
-+++ b/CMakeLists.txt
-@@ -65,6 +65,8 @@ INCLUDE(BALLCompilerSpecific)
- # Determine BALL configuration
- INCLUDE(BALLConfiguration)
- 
-+INCLUDE(GNUInstallDirs)
-+
- # We do not have a Component-based installer in MacOS
- IF(NOT APPLE)
- 	INCLUDE(BALLComponents)
-@@ -473,20 +475,20 @@ SET(CMAKE_RUNTIME_OUTPUT_DIRECTORY "${PROJECT_BINARY_DIR}/bin")
- 
- ## These variables are used in all install-targets
- IF (NOT APPLE)
--	SET(BALL_RUNTIME_INSTALL_DIRECTORY "bin")
--	SET(BALL_LIBRARY_INSTALL_DIRECTORY "lib")
--	SET(BALL_ARCHIVE_INSTALL_DIRECTORY "lib")
--	SET(BALL_HEADER_INSTALL_DIRECTORY   ".")
--	SET(BALL_DATA_INSTALL_DIRECTORY    "share/BALL")
--	SET(BALL_DOCUMENTATION_INSTALL_DIRECTORY    "share/BALL/doc")
--	SET(BALL_TOOLS_INSTALL_DIRECTORY   "bin/BALLTools")
-+	SET(BALL_RUNTIME_INSTALL_DIRECTORY ${CMAKE_INSTALL_BINDIR})
-+	SET(BALL_LIBRARY_INSTALL_DIRECTORY ${CMAKE_INSTALL_LIBDIR})
-+	SET(BALL_ARCHIVE_INSTALL_DIRECTORY ${CMAKE_INSTALL_LIBDIR})
-+	SET(BALL_HEADER_INSTALL_DIRECTORY  ${CMAKE_INSTALL_INCLUDEDIR})
-+	SET(BALL_DATA_INSTALL_DIRECTORY    ${CMAKE_INSTALL_DATAROOTDIR}/BALL)
-+	SET(BALL_DOCUMENTATION_INSTALL_DIRECTORY    ${CMAKE_INSTALL_DOCDIR})
-+	SET(BALL_TOOLS_INSTALL_DIRECTORY   ${CMAKE_INSTALL_BINDIR}/BALLTools)
- 
- 	IF(WIN32)
- 		SET(BALL_PYTHON_INSTALL_DIRECTORY  "bin")
- 		SET(BALL_PLUGIN_INSTALL_DIRECTORY  "bin")
- 	ELSE()
--		SET(BALL_PYTHON_INSTALL_DIRECTORY  "lib")
--		SET(BALL_PLUGIN_INSTALL_DIRECTORY  "lib")
-+		SET(BALL_PYTHON_INSTALL_DIRECTORY  ${CMAKE_INSTALL_LIBDIR})
-+		SET(BALL_PLUGIN_INSTALL_DIRECTORY  ${CMAKE_INSTALL_LIBDIR})
- 	ENDIF()
- ENDIF()
- 
-@@ -710,21 +712,21 @@ IF(NOT APPLE)
- 	## care of data files and headers
- 	IF (NOT "${CMAKE_INSTALL_PREFIX}" STREQUAL ".")
- 		### Install the data directories
--		INSTALL(DIRECTORY data DESTINATION "${BALL_DATA_INSTALL_DIRECTORY}" COMPONENT ${COMPONENT_LIBBALL})
-+		INSTALL(DIRECTORY data/ DESTINATION "${BALL_DATA_INSTALL_DIRECTORY}" COMPONENT ${COMPONENT_LIBBALL})
- 
- 		### Install the includes
--		INSTALL(DIRECTORY include DESTINATION "${BALL_HEADER_INSTALL_DIRECTORY}" COMPONENT ${COMPONENT_LIBBALL_DEV})
-+		INSTALL(DIRECTORY include/ DESTINATION "${BALL_HEADER_INSTALL_DIRECTORY}" COMPONENT ${COMPONENT_LIBBALL_DEV})
- 	ENDIF()
- 
- 	## The configured files have to be copied in any case
- 	INSTALL(FILES ${PROJECT_BINARY_DIR}/include/BALL/CONFIG/config.h
--		DESTINATION "${BALL_HEADER_INSTALL_DIRECTORY}/include/BALL/CONFIG"
-+		DESTINATION "${BALL_HEADER_INSTALL_DIRECTORY}/BALL/CONFIG"
- 		COMPONENT ${COMPONENT_LIBBALL_DEV}
- 	)
- 
- 	INSTALL(FILES
- 		${PROJECT_BINARY_DIR}/include/BALL/PYTHON/BALLPythonConfig.h
--		DESTINATION "${BALL_HEADER_INSTALL_DIRECTORY}/include/BALL/PYTHON"
-+		DESTINATION "${BALL_HEADER_INSTALL_DIRECTORY}/BALL/PYTHON"
- 		COMPONENT ${COMPONENT_LIBBALL_DEV}
- 	)
- 
-@@ -866,7 +868,7 @@ EXPORT(PACKAGE BALL)
- # Generate CMake package configuration for BALL installation
- IF(NOT APPLE)
- 	# Installation path for BALL CMake package configuration files
--	SET(BALL_CMAKE_EXPORT_PATH "lib/cmake/BALL" CACHE PATH "Path to the cmake package configuration files")
-+	SET(BALL_CMAKE_EXPORT_PATH ${CMAKE_INSTALL_LIBDIR}/cmake/BALL CACHE PATH "Path to the cmake package configuration files")
- 
- 	LIST(REMOVE_ITEM BALL_INCLUDE_DIRS "${PROJECT_BINARY_DIR}/include")
- 	LIST(REMOVE_ITEM BALL_INCLUDE_DIRS "${PROJECT_SOURCE_DIR}/include")
--- 
-2.17.0
-
-
-From 17cbef40ad91cf051ca83b1ccf53dd2ccb22fc8d Mon Sep 17 00:00:00 2001
-From: Andreas Sturmlechner <andreas.sturmlechner@gmail.com>
-Date: Sat, 21 Apr 2018 21:20:01 +0200
-Subject: [PATCH 2/3] Drop superfluous cmake variables
-
----
- CMakeLists.txt                                | 34 +++++++------------
- cmake/BALLDoc.cmake                           |  6 ++--
- source/APPLICATIONS/BALLVIEW/CMakeLists.txt   |  4 +--
- source/EXTENSIONS/BALLAXY/CMakeLists.txt      |  2 +-
- source/EXTENSIONS/JUPYTER/CMakeLists.txt      |  2 +-
- source/EXTENSIONS/PRESENTABALL/CMakeLists.txt |  2 +-
- source/PYTHON/EXTENSIONS/CMakeLists.txt       | 12 +++----
- 7 files changed, 27 insertions(+), 35 deletions(-)
-
-diff --git a/CMakeLists.txt b/CMakeLists.txt
-index 1a54446fb..9b9f3513b 100644
---- a/CMakeLists.txt
-+++ b/CMakeLists.txt
-@@ -475,14 +475,6 @@ SET(CMAKE_RUNTIME_OUTPUT_DIRECTORY "${PROJECT_BINARY_DIR}/bin")
- 
- ## These variables are used in all install-targets
- IF (NOT APPLE)
--	SET(BALL_RUNTIME_INSTALL_DIRECTORY ${CMAKE_INSTALL_BINDIR})
--	SET(BALL_LIBRARY_INSTALL_DIRECTORY ${CMAKE_INSTALL_LIBDIR})
--	SET(BALL_ARCHIVE_INSTALL_DIRECTORY ${CMAKE_INSTALL_LIBDIR})
--	SET(BALL_HEADER_INSTALL_DIRECTORY  ${CMAKE_INSTALL_INCLUDEDIR})
--	SET(BALL_DATA_INSTALL_DIRECTORY    ${CMAKE_INSTALL_DATAROOTDIR}/BALL)
--	SET(BALL_DOCUMENTATION_INSTALL_DIRECTORY    ${CMAKE_INSTALL_DOCDIR})
--	SET(BALL_TOOLS_INSTALL_DIRECTORY   ${CMAKE_INSTALL_BINDIR}/BALLTools)
--
- 	IF(WIN32)
- 		SET(BALL_PYTHON_INSTALL_DIRECTORY  "bin")
- 		SET(BALL_PLUGIN_INSTALL_DIRECTORY  "bin")
-@@ -693,18 +685,18 @@ IF(NOT APPLE)
- 	INSTALL(TARGETS BALL
- 		EXPORT BALLExportGroup
- 		COMPONENT "${COMPONENT_LIBBALL}"
--		RUNTIME DESTINATION "${BALL_RUNTIME_INSTALL_DIRECTORY}"
--		LIBRARY DESTINATION "${BALL_LIBRARY_INSTALL_DIRECTORY}"
--		ARCHIVE DESTINATION "${BALL_ARCHIVE_INSTALL_DIRECTORY}"
-+		RUNTIME DESTINATION "${CMAKE_INSTALL_BINDIR}"
-+		LIBRARY DESTINATION "${CMAKE_INSTALL_LIBDIR}"
-+		ARCHIVE DESTINATION "${CMAKE_INSTALL_LIBDIR}"
- 	)
- 
- 	IF(BALL_HAS_VIEW)
- 		INSTALL(TARGETS VIEW
- 			EXPORT BALLExportGroup
- 			COMPONENT "${COMPONENT_LIBVIEW}"
--			RUNTIME DESTINATION "${BALL_RUNTIME_INSTALL_DIRECTORY}"
--			LIBRARY DESTINATION "${BALL_LIBRARY_INSTALL_DIRECTORY}"
--			ARCHIVE DESTINATION "${BALL_ARCHIVE_INSTALL_DIRECTORY}"
-+			RUNTIME DESTINATION "${CMAKE_INSTALL_BINDIR}"
-+			LIBRARY DESTINATION "${CMAKE_INSTALL_LIBDIR}"
-+			ARCHIVE DESTINATION "${CMAKE_INSTALL_LIBDIR}"
- 		)
- 	ENDIF()
- 
-@@ -712,21 +704,21 @@ IF(NOT APPLE)
- 	## care of data files and headers
- 	IF (NOT "${CMAKE_INSTALL_PREFIX}" STREQUAL ".")
- 		### Install the data directories
--		INSTALL(DIRECTORY data/ DESTINATION "${BALL_DATA_INSTALL_DIRECTORY}" COMPONENT ${COMPONENT_LIBBALL})
-+		INSTALL(DIRECTORY data/ DESTINATION ${CMAKE_INSTALL_DATAROOTDIR}/BALL COMPONENT ${COMPONENT_LIBBALL})
- 
- 		### Install the includes
--		INSTALL(DIRECTORY include/ DESTINATION "${BALL_HEADER_INSTALL_DIRECTORY}" COMPONENT ${COMPONENT_LIBBALL_DEV})
-+		INSTALL(DIRECTORY include/ DESTINATION "${CMAKE_INSTALL_INCLUDEDIR}" COMPONENT ${COMPONENT_LIBBALL_DEV})
- 	ENDIF()
- 
- 	## The configured files have to be copied in any case
- 	INSTALL(FILES ${PROJECT_BINARY_DIR}/include/BALL/CONFIG/config.h
--		DESTINATION "${BALL_HEADER_INSTALL_DIRECTORY}/BALL/CONFIG"
-+		DESTINATION "${CMAKE_INSTALL_INCLUDEDIR}/BALL/CONFIG"
- 		COMPONENT ${COMPONENT_LIBBALL_DEV}
- 	)
- 
- 	INSTALL(FILES
- 		${PROJECT_BINARY_DIR}/include/BALL/PYTHON/BALLPythonConfig.h
--		DESTINATION "${BALL_HEADER_INSTALL_DIRECTORY}/BALL/PYTHON"
-+		DESTINATION "${CMAKE_INSTALL_INCLUDEDIR}/BALL/PYTHON"
- 		COMPONENT ${COMPONENT_LIBBALL_DEV}
- 	)
- 
-@@ -744,14 +736,14 @@ IF(NOT APPLE)
- 		FOREACH(LIB ${BALL_DEP_OPT_DLLS})
- 			STRING(TOLOWER "${LIB}" LOWER_LIB)
- 			INSTALL(FILES "${LIB}"
--				DESTINATION "${BALL_RUNTIME_INSTALL_DIRECTORY}"
-+				DESTINATION "${CMAKE_INSTALL_BINDIR}"
- 				COMPONENT ${COMPONENT_LIBBALL})
- 		ENDFOREACH()
- 
- 		IF(QT_DEPLOY_EXECUTABLE)
- 			INSTALL(CODE
--				"EXECUTE_PROCESS(COMMAND ${QT_DEPLOY_EXECUTABLE} \$\{CMAKE_INSTALL_PREFIX\}/${BALL_RUNTIME_INSTALL_DIRECTORY}/BALL.dll)
--				EXECUTE_PROCESS(COMMAND ${QT_DEPLOY_EXECUTABLE} \$\{CMAKE_INSTALL_PREFIX\}/${BALL_RUNTIME_INSTALL_DIRECTORY}/VIEW.dll)"
-+				"EXECUTE_PROCESS(COMMAND ${QT_DEPLOY_EXECUTABLE} \$\{CMAKE_INSTALL_PREFIX\}/${CMAKE_INSTALL_BINDIR}/BALL.dll)
-+				EXECUTE_PROCESS(COMMAND ${QT_DEPLOY_EXECUTABLE} \$\{CMAKE_INSTALL_PREFIX\}/${CMAKE_INSTALL_BINDIR}/VIEW.dll)"
- 				COMPONENT "${COMPONENT_LIBBALL}")
- 		ENDIF()
- 	ENDIF()
-diff --git a/cmake/BALLDoc.cmake b/cmake/BALLDoc.cmake
-index 061b9c95f..2d7c17466 100644
---- a/cmake/BALLDoc.cmake
-+++ b/cmake/BALLDoc.cmake
-@@ -20,7 +20,7 @@ ENDIF()
- 
- IF(NOT APPLE)
- 	INSTALL(DIRECTORY   "${PROJECT_SOURCE_DIR}/doc/examples/"
--		DESTINATION "${BALL_DOCUMENTATION_INSTALL_DIRECTORY}/EXAMPLES"
-+		DESTINATION "${CMAKE_INSTALL_DOCDIR}/EXAMPLES"
- 		COMPONENT   "${COMPONENT_DOCUMENTATION_EXAMPLES}")
- ENDIF()
- 
-@@ -53,7 +53,7 @@ IF (DOXYGEN_FOUND)
- 
- 	IF(NOT APPLE)
- 		INSTALL(DIRECTORY   "${PROJECT_BINARY_DIR}/doc/html/"
--			DESTINATION "${BALL_DOCUMENTATION_INSTALL_DIRECTORY}/BALL"
-+			DESTINATION "${CMAKE_INSTALL_DOCDIR}/BALL"
- 			COMPONENT   "${COMPONENT_DOCUMENTATION_HTML}"
- 		)
- 	ENDIF()
-@@ -107,7 +107,7 @@ IF (LATEX_COMPILER AND DVIPS_CONVERTER)
- 
- 	IF(NOT APPLE)
- 		INSTALL(FILES   ${PROJECT_BINARY_DIR}/doc/tutorial.pdf
--			DESTINATION "${BALL_DOCUMENTATION_INSTALL_DIRECTORY}/TUTORIAL"
-+			DESTINATION "${CMAKE_INSTALL_DOCDIR}/TUTORIAL"
- 			COMPONENT   "${COMPONENT_DOCUMENTATION_PDF}"
- 			OPTIONAL
- 		)
-diff --git a/source/APPLICATIONS/BALLVIEW/CMakeLists.txt b/source/APPLICATIONS/BALLVIEW/CMakeLists.txt
-index b4b96c31c..5fd21ee68 100644
---- a/source/APPLICATIONS/BALLVIEW/CMakeLists.txt
-+++ b/source/APPLICATIONS/BALLVIEW/CMakeLists.txt
-@@ -59,13 +59,13 @@ IF(APPLE)
- ELSE()
- 	INSTALL(TARGETS BALLView
- 		COMPONENT "${COMPONENT_BALLVIEW}"
--		RUNTIME DESTINATION "${BALL_RUNTIME_INSTALL_DIRECTORY}"
-+		RUNTIME DESTINATION "${CMAKE_INSTALL_BINDIR}"
- 		BUNDLE DESTINATION "${BALL_BUNDLE_INSTALL_DIRECTORY}"
- 	)
- 
- 	IF(WIN32)
- 		IF(QT_DEPLOY_EXECUTABLE)
--			INSTALL(CODE "EXECUTE_PROCESS(COMMAND ${QT_DEPLOY_EXECUTABLE} \$\{CMAKE_INSTALL_PREFIX\}/${BALL_RUNTIME_INSTALL_DIRECTORY}/BALLView.exe)"
-+			INSTALL(CODE "EXECUTE_PROCESS(COMMAND ${QT_DEPLOY_EXECUTABLE} \$\{CMAKE_INSTALL_PREFIX\}/${CMAKE_INSTALL_BINDIR}/BALLView.exe)"
- 				COMPONENT "${COMPONENT_BALLVIEW}")
- 		ENDIF()
- 	ENDIF()
-diff --git a/source/EXTENSIONS/BALLAXY/CMakeLists.txt b/source/EXTENSIONS/BALLAXY/CMakeLists.txt
-index 2fdfcbeed..1eed12c37 100644
---- a/source/EXTENSIONS/BALLAXY/CMakeLists.txt
-+++ b/source/EXTENSIONS/BALLAXY/CMakeLists.txt
-@@ -66,7 +66,7 @@ IF(NOT APPLE)
- 
- 	IF(WIN32)
- 		IF(QT_DEPLOY_EXECUTABLE)
--			INSTALL(CODE "EXECUTE_PROCESS(COMMAND ${QT_DEPLOY_EXECUTABLE} \$\{CMAKE_INSTALL_PREFIX\}/${BALL_RUNTIME_INSTALL_DIRECTORY}/pluginBALLaxy.dll)"
-+			INSTALL(CODE "EXECUTE_PROCESS(COMMAND ${QT_DEPLOY_EXECUTABLE} \$\{CMAKE_INSTALL_PREFIX\}/${CMAKE_INSTALL_BINDIR}/pluginBALLaxy.dll)"
- 				COMPONENT "Unspecified")
- 		ENDIF()
- 	ENDIF()
-diff --git a/source/EXTENSIONS/JUPYTER/CMakeLists.txt b/source/EXTENSIONS/JUPYTER/CMakeLists.txt
-index bb7e91921..24a459fbf 100644
---- a/source/EXTENSIONS/JUPYTER/CMakeLists.txt
-+++ b/source/EXTENSIONS/JUPYTER/CMakeLists.txt
-@@ -78,7 +78,7 @@ IF(NOT APPLE)
- 
- 	IF(WIN32)
- 		IF(QT_DEPLOY_EXECUTABLE)
--			INSTALL(CODE "EXECUTE_PROCESS(COMMAND ${QT_DEPLOY_EXECUTABLE} \$\{CMAKE_INSTALL_PREFIX\}/${BALL_RUNTIME_INSTALL_DIRECTORY}/pluginJupyter.dll)"
-+			INSTALL(CODE "EXECUTE_PROCESS(COMMAND ${QT_DEPLOY_EXECUTABLE} \$\{CMAKE_INSTALL_PREFIX\}/${CMAKE_INSTALL_BINDIR}/pluginJupyter.dll)"
- 				COMPONENT "Unspecified")
- 		ENDIF()
- 	ENDIF()
-diff --git a/source/EXTENSIONS/PRESENTABALL/CMakeLists.txt b/source/EXTENSIONS/PRESENTABALL/CMakeLists.txt
-index 8606f2f26..ad027fd03 100644
---- a/source/EXTENSIONS/PRESENTABALL/CMakeLists.txt
-+++ b/source/EXTENSIONS/PRESENTABALL/CMakeLists.txt
-@@ -66,7 +66,7 @@ IF(NOT APPLE)
- 
- 	IF(WIN32)
- 		IF(QT_DEPLOY_EXECUTABLE)
--			INSTALL(CODE "EXECUTE_PROCESS(COMMAND ${QT_DEPLOY_EXECUTABLE} \$\{CMAKE_INSTALL_PREFIX\}/${BALL_RUNTIME_INSTALL_DIRECTORY}/pluginPresentaBALL.dll)"
-+			INSTALL(CODE "EXECUTE_PROCESS(COMMAND ${QT_DEPLOY_EXECUTABLE} \$\{CMAKE_INSTALL_PREFIX\}/${CMAKE_INSTALL_BINDIR}/pluginPresentaBALL.dll)"
- 				COMPONENT "Unspecified")
- 		ENDIF()
- 	ENDIF()
-diff --git a/source/PYTHON/EXTENSIONS/CMakeLists.txt b/source/PYTHON/EXTENSIONS/CMakeLists.txt
-index 590e1de3a..374732519 100644
---- a/source/PYTHON/EXTENSIONS/CMakeLists.txt
-+++ b/source/PYTHON/EXTENSIONS/CMakeLists.txt
-@@ -49,15 +49,15 @@ IF(BALL_PYTHON_SUPPORT)
- 	IF(NOT APPLE)
- 		INSTALL(TARGETS BALLCoremodule
- 			COMPONENT "${COMPONENT_PYTHON_BINDINGS_BALL}"
--			RUNTIME DESTINATION ${BALL_RUNTIME_INSTALL_DIRECTORY}
--			LIBRARY DESTINATION ${BALL_LIBRARY_INSTALL_DIRECTORY}
-+			RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}
-+			LIBRARY DESTINATION ${CMAKE_INSTALL_LIBDIR}
- 		)
- 
- 		IF(BALL_HAS_VIEW)
- 			INSTALL(TARGETS VIEWmodule
- 				COMPONENT "${COMPONENT_PYTHON_BINDINGS_VIEW}"
--				RUNTIME DESTINATION ${BALL_RUNTIME_INSTALL_DIRECTORY}
--				LIBRARY DESTINATION ${BALL_LIBRARY_INSTALL_DIRECTORY}
-+				RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}
-+				LIBRARY DESTINATION ${CMAKE_INSTALL_LIBDIR}
- 			)
- 		ENDIF()
- 
-@@ -69,7 +69,7 @@ IF(BALL_PYTHON_SUPPORT)
- 		IF (WIN32)
- 			#		INSTALL(FILES ${PYTHON_EXECUTABLE}
- 			#	COMPONENT "${COMPONENT_PYTHON_BINDINGS_BALL}"
--			#	DESTINATION "${BALL_RUNTIME_INSTALL_DIRECTORY}"
-+			#	DESTINATION "${CMAKE_INSTALL_BINDIR}"
- 			#)
- 
- 
-@@ -78,7 +78,7 @@ IF(BALL_PYTHON_SUPPORT)
- 
- 			INSTALL(DIRECTORY "${PYTHON_SITE_PACKAGES_DIR}"
- 				COMPONENT "${COMPONENT_PYTHON_BINDINGS_BALL}"
--				DESTINATION "${BALL_RUNTIME_INSTALL_DIRECTORY}"
-+				DESTINATION "${CMAKE_INSTALL_BINDIR}"
- 			)
- 		ENDIF ()
- 	ENDIF()
--- 
-2.17.0
-
-
-From 666ca19b00b14752e69c05600725724fb4f6d488 Mon Sep 17 00:00:00 2001
-From: Andreas Sturmlechner <andreas.sturmlechner@gmail.com>
-Date: Sat, 21 Apr 2018 22:02:14 +0200
-Subject: [PATCH 3/3] Install html doc into "html" dir
-
----
- cmake/BALLDoc.cmake | 2 +-
- 1 file changed, 1 insertion(+), 1 deletion(-)
-
-diff --git a/cmake/BALLDoc.cmake b/cmake/BALLDoc.cmake
-index 2d7c17466..a070613c8 100644
---- a/cmake/BALLDoc.cmake
-+++ b/cmake/BALLDoc.cmake
-@@ -53,7 +53,7 @@ IF (DOXYGEN_FOUND)
- 
- 	IF(NOT APPLE)
- 		INSTALL(DIRECTORY   "${PROJECT_BINARY_DIR}/doc/html/"
--			DESTINATION "${CMAKE_INSTALL_DOCDIR}/BALL"
-+			DESTINATION "${CMAKE_INSTALL_DOCDIR}/html"
- 			COMPONENT   "${COMPONENT_DOCUMENTATION_HTML}"
- 		)
- 	ENDIF()
--- 
-2.17.0
-
diff --git a/sci-chemistry/ball/metadata.xml b/sci-chemistry/ball/metadata.xml
deleted file mode 100644
index 6f18011f2e04..000000000000
--- a/sci-chemistry/ball/metadata.xml
+++ /dev/null
@@ -1,36 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="project">
-		<email>sci-chemistry@gentoo.org</email>
-		<name>Gentoo Chemistry Project</name>
-	</maintainer>
-	<longdescription>
-Rapid Software Prototyping can significantly reduce development times in the 
-field of Computational Molecular Biology and Molecular Modeling. 
-BALL (Biochemical Algorithms Library) is an application framework in C++ that 
-has been specifically designed for this purpose. It provides an extensive set 
-of data structures as well as classes for Molecular Mechanics, advanced 
-solvation methods, comparison and analysis of protein structures, file 
-import/export, and visualization .
-
-BALL has been carefully designed to be robust, easy to use, and open to 
-extensions. Especially its extensibility which results from an object-oriented 
-and generic programming approach distinguishes it from other software packages.
-BALL is well suited to serve as a public repository for reliable data 
-structures and algorithms.
-
-Based on BALL we have developed a stand-alone tool for molecular visualization,
-BALLView . BALLView makes the broad functionality available through an 
-integrated user-friendly GUI.
-	</longdescription>
-	<use>
-		<flag name="cuda">Include cuda support</flag>
-		<flag name="fftw">Build with <pkg>sci-libs/fftw</pkg> (switching BALL to GPL3)</flag>
-		<flag name="gui">Build VIEW library required for visualization and graphical user interfaces</flag>
-		<flag name="lpsolve">Enable support for the Mixed Integer Linear Programming solver</flag>
-		<flag name="openbabel">Enable support for <pkg>sci-chemistry/openbabel</pkg> (switching BALL to GPL3)</flag>
-		<flag name="svm">Enable support for the Support Vector Machine module</flag>
-		<flag name="webengine">Enable QtWebEngine support with Qt5 (requires gui)</flag>
-	</use>
-</pkgmetadata>