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author | David Seifert <soap@gentoo.org> | 2017-11-25 17:47:47 +0100 |
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committer | David Seifert <soap@gentoo.org> | 2017-11-25 18:33:09 +0100 |
commit | 76c1f93b658b64b71f6462fbb214c6664162252d (patch) | |
tree | eb3cec4614fef671b31ec34c3d36db5ce6cbbaa3 /sci-biology | |
parent | sci-biology/trnascan-se: [QA] Consistent whitespace in metadata.xml (diff) | |
download | gentoo-76c1f93b658b64b71f6462fbb214c6664162252d.tar.gz gentoo-76c1f93b658b64b71f6462fbb214c6664162252d.tar.bz2 gentoo-76c1f93b658b64b71f6462fbb214c6664162252d.zip |
sci-biology/vienna-rna: [QA] Consistent whitespace in metadata.xml
Diffstat (limited to 'sci-biology')
-rw-r--r-- | sci-biology/vienna-rna/metadata.xml | 42 |
1 files changed, 21 insertions, 21 deletions
diff --git a/sci-biology/vienna-rna/metadata.xml b/sci-biology/vienna-rna/metadata.xml index 861e9e38c31c..bbc3d41fb4a6 100644 --- a/sci-biology/vienna-rna/metadata.xml +++ b/sci-biology/vienna-rna/metadata.xml @@ -1,25 +1,25 @@ <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> - <maintainer type="project"> - <email>sci-biology@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> - <longdescription> - The Vienna RNA Package consists of a C code library and several - stand-alone programs for the prediction and comparison of RNA secondary - structures. RNA secondary structure prediction through energy - minimization is the most used function in the package. We provide three - kinds of dynamic programming algorithms for structure prediction: the - minimum free energy algorithm of (Zuker and Stiegler 1981) which yields a - single optimal structure, the partition function algorithm of - (McCaskill 1990) which calculates base pair probabilities in the - thermodynamic ensemble, and the suboptimal folding algorithm of - (Wuchty et.al 1999) which generates all suboptimal structures within a - given energy range of the optimal energy. For secondary structure - comparison, the package contains several measures of distance - (dissimilarities) using either string alignment or tree-editing - (Shapiro and Zhang 1990). Finally, we provide an algorithm to design - sequences with a predefined structure (inverse folding). -</longdescription> + <maintainer type="project"> + <email>sci-biology@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> + <longdescription> + The Vienna RNA Package consists of a C code library and several + stand-alone programs for the prediction and comparison of RNA secondary + structures. RNA secondary structure prediction through energy + minimization is the most used function in the package. We provide three + kinds of dynamic programming algorithms for structure prediction: the + minimum free energy algorithm of (Zuker and Stiegler 1981) which yields a + single optimal structure, the partition function algorithm of + (McCaskill 1990) which calculates base pair probabilities in the + thermodynamic ensemble, and the suboptimal folding algorithm of + (Wuchty et.al 1999) which generates all suboptimal structures within a + given energy range of the optimal energy. For secondary structure + comparison, the package contains several measures of distance + (dissimilarities) using either string alignment or tree-editing + (Shapiro and Zhang 1990). Finally, we provide an algorithm to design + sequences with a predefined structure (inverse folding). + </longdescription> </pkgmetadata> |