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| author |   David Seifert <soap@gentoo.org> | 2023-04-08 19:53:38 +0200 |
|---|---|---|
| committer | David Seifert <soap@gentoo.org> | 2023-04-08 19:53:38 +0200 |
| commit | e88f627a3bada9db443b5234ac3fa71c6102c63d (patch) | |
| tree | ad409ce779160c98cd748a77d1ec799a03e1ba89 /sci-biology/pysam/pysam-0.21.0.ebuild | |
| parent | net-print/hplip-plugin: Stabilize 3.22.10 amd64, #899282 (diff) | |
| download | gentoo-e88f627a3bada9db443b5234ac3fa71c6102c63d.tar.gz gentoo-e88f627a3bada9db443b5234ac3fa71c6102c63d.tar.bz2 gentoo-e88f627a3bada9db443b5234ac3fa71c6102c63d.zip | |
sci-biology/pysam: fix build with cython 3
Closes: https://bugs.gentoo.org/898730
Signed-off-by: David Seifert <soap@gentoo.org>
Diffstat (limited to 'sci-biology/pysam/pysam-0.21.0.ebuild')
| -rw-r--r-- | sci-biology/pysam/pysam-0.21.0.ebuild | 6 |
1 files changed, 6 insertions, 0 deletions
diff --git a/sci-biology/pysam/pysam-0.21.0.ebuild b/sci-biology/pysam/pysam-0.21.0.ebuild index 588cd1bc4f1b..77292ed29613 100644 --- a/sci-biology/pysam/pysam-0.21.0.ebuild +++ b/sci-biology/pysam/pysam-0.21.0.ebuild @@ -31,6 +31,12 @@ distutils_enable_tests pytest DISTUTILS_IN_SOURCE_BUILD=1 +PATCHES=( + # backport + # https://github.com/pysam-developers/pysam/commit/17bb13dcfdb56ac238458dcef23fe01893a892e9 + "${FILESDIR}"/${P}-cython-3.patch +) + EPYTEST_DESELECT=( # only work with bundled htslib 'tests/tabix_test.py::TestRemoteFileHTTP' |