diff options
| author |   azazello <gentoo@horizon.ath.cx> | 2007-04-20 21:15:07 +0000 |
|---|---|---|
| committer | azazello <gentoo@horizon.ath.cx> | 2007-04-20 21:15:07 +0000 |
| commit | 601b063f986688f2b2a1c8ca023558607be35db7 (patch) | |
| tree | 25e42b5cc2699cfda36822032f6fdfb145555c45 /sci-biology | |
| parent | sci-biology/repeatmasker-libraries: new package (bug 114096) (diff) | |
| download | sunrise-reviewed-601b063f986688f2b2a1c8ca023558607be35db7.tar.gz sunrise-reviewed-601b063f986688f2b2a1c8ca023558607be35db7.tar.bz2 sunrise-reviewed-601b063f986688f2b2a1c8ca023558607be35db7.zip | |
sci-biology/phrap: new package (bug 114094)
svn path=/sunrise/; revision=3495
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/phrap/ChangeLog | 8 | ||||
| -rw-r--r-- | sci-biology/phrap/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/phrap/metadata.xml | 5 | ||||
| -rw-r--r-- | sci-biology/phrap/phrap-0.990329.ebuild | 36 |
4 files changed, 53 insertions, 0 deletions
diff --git a/sci-biology/phrap/ChangeLog b/sci-biology/phrap/ChangeLog new file mode 100644 index 000000000..c5d60c434 --- /dev/null +++ b/sci-biology/phrap/ChangeLog @@ -0,0 +1,8 @@ +# ChangeLog for sci-biology/phrap +# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + + 20 Apr 2007; AK <gentoo@horizon.ath.cx> +phrap-0.990329.ebuild, + +metadata.xml: + new package (bug 114094) + diff --git a/sci-biology/phrap/Manifest b/sci-biology/phrap/Manifest new file mode 100644 index 000000000..a330fa263 --- /dev/null +++ b/sci-biology/phrap/Manifest @@ -0,0 +1,4 @@ +DIST phrap-distrib.tar.Z 366163 RMD160 f6d15059903868b907df225b9022b47957f4004a SHA1 69d9343d1d3bc7edcab2ebca222370fc9db7b9f7 SHA256 e0be79818e3a8ca17391f42cc0ffbaf1a63299c8845a0b9ac3aaeb3cac641fcc +EBUILD phrap-0.990329.ebuild 855 RMD160 0802d75b5bd0196607595a468c0bc2815467112a SHA1 39f365adffc26318bb141329759026628e9b0b10 SHA256 a774f70d6cf5903f44fa85b6f932c0edce574a7bcc516a04026a6379396e8706 +MISC ChangeLog 229 RMD160 d07e26fa3b4541fad029d9a74f3bbc37120aba9b SHA1 1f4ee8efd799a53f6eadbb8d3459d80a51b6bb0c SHA256 db7c607c3d8d40c62742d25d797687139bad098a304a977c4f5c0afa3d329602 +MISC metadata.xml 170 RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 SHA1 ac7f48a14fec325926f9ce1be8fbf1f311b4f2e4 SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42 diff --git a/sci-biology/phrap/metadata.xml b/sci-biology/phrap/metadata.xml new file mode 100644 index 000000000..7e3286984 --- /dev/null +++ b/sci-biology/phrap/metadata.xml @@ -0,0 +1,5 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<herd>maintainer-wanted</herd> +</pkgmetadata> diff --git a/sci-biology/phrap/phrap-0.990329.ebuild b/sci-biology/phrap/phrap-0.990329.ebuild new file mode 100644 index 000000000..7baf513c8 --- /dev/null +++ b/sci-biology/phrap/phrap-0.990329.ebuild @@ -0,0 +1,36 @@ +# Copyright 1999-2007 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +DESCRIPTION="Phrap, swat, cross_match: Shotgun assembly and alignment utilities" +HOMEPAGE="http://www.phrap.org/" +SRC_URI="phrap-distrib.tar.Z" + +LICENSE="as-is" +SLOT="0" +KEYWORDS="~x86" +IUSE="" + +DEPEND="" +RDEPEND="" + +S="${WORKDIR}" + +RESTRICT="fetch" + +pkg_nofetch() { + einfo "Please visit http://www.phrap.org/phredphrapconsed.html and obtain the file" + einfo '"distrib.tar.Z", then rename it to "phrap-distrib.tar.Z" and put it in' + einfo ${DISTDIR} +} + +src_compile() { + sed -i 's/CFLAGS=/#CFLAGS=/' makefile + sed -i 's|#!/usr/local/bin/perl|#!/usr/bin/perl|' phrapview + emake || die "emake failed" +} + +src_install() { + dobin cluster cross_match loco phrap phrapview swat + for i in {general,phrap,swat}.doc; do newdoc $i $i.txt; done +} |