Add epatch_user back for gromacs live ebuilds

(Portage version: 2.2.0_alpha25/git/Linux x86_64, signed Manifest commit with key F82F92E6)

3 files changed, 25 insertions, 13 deletions

diff --git a/sci-chemistry/gromacs/Manifest b/sci-chemistry/gromacs/Manifest
index 90116ff62..1efbc6545 100644
--- a/sci-chemistry/gromacs/Manifest
+++ b/sci-chemistry/gromacs/Manifest
@@ -1,23 +1,29 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
+Hash: SHA256
 
 DIST ffamber_v4.0-doc.tar.gz 7915520 RMD160 aeadb18bd88bcd9e6fc45af22af15c51e32c66a3 SHA1 8d4969fa7eec660b41f769874be9698980b49ed0 SHA256 0b3395570dfe9bf808a297fcb120e1f525f38a91791fbafe6e444d542d7754aa
 DIST gmxtest-4.0.4.tgz 14845017 RMD160 c7c583415438bdef4c9996da9064254e9460cf16 SHA1 998179aa2bfbc4f80514f10ed774762f85c854c3 SHA256 6a7f787f4bb7cbecb688115ff0854a5ffd2ef33487d7bce4b031e63848b6f361
 DIST gromacs-manual-4.0.pdf 2135100 RMD160 b963642f8e1433f11328c3d0c4b1645c9de506da SHA1 8ae951ee15b2a7dc626331fce36511bc8766144c SHA256 646f810477eee2d710de6019c52056550413d0ba77baf9680195c835ddafe80a
 DIST gromacs-manual-4.5.3.pdf 2438528 RMD160 07f5ec0db1a773e77806c79554e5bb4fa8533dfd SHA1 7c81fc18e426d1090c485968d81957977ff10fc9 SHA256 6794fca3a2125918a03cd6bae3c031ab9b213c42a5f68a720c955b9107508717
 EBUILD gromacs-4.0.9999.ebuild 9246 RMD160 95001d304942bd265c0e70427fe63ca49e770a7e SHA1 ad25ea57c49b1128e0cfca42b7b32650fffd38b0 SHA256 440f06529eaf1532846f490da3bf403e6f84dec0a1b81b5e35a121d06dd999e6
-EBUILD gromacs-4.5.9999.ebuild 7670 RMD160 d71968c5d4e4b1043b45173c9d68d7210b451f0a SHA1 ff8f12c9494fb0873f509a729196b056a46b95fd SHA256 994a76880fd6ebfbca905d459ac26e695925276f3430564d9f8a107487ea096d
-EBUILD gromacs-9999.ebuild 7143 RMD160 d8076214c09578f0486f93ce19af9e5ffe699c0f SHA1 6bab1cc9548402c89b2ddbf622672d3b9a2a84a4 SHA256 9766c4ef55d310c5144efff3e04fbf8fd12a706040d4d541a934be43c016a213
+EBUILD gromacs-4.5.9999.ebuild 7758 RMD160 34553e74c0befed99276f079c28406f2aef942a0 SHA1 4299fb279ec0db5c4c0ba20107d82ac49ac55383 SHA256 a72fb20c9a41522e8b5bfc0556a4bdeba5c3ae9fcef338cd24ce1271b09e38fd
+EBUILD gromacs-9999.ebuild 7231 RMD160 e002067fc81e7a753af33fe4173add5b41492885 SHA1 3f6a77450939bab4f228db0e19e1f6554562ebb4 SHA256 92c664e87b9fdd136bec0ed38d1be50d3ac8abda610416c72c517f1a7e54c744
 MISC ChangeLog 7790 RMD160 1bae12cc584b31636144baba2c38888b77399bdb SHA1 484033800d98740f6556da1bf4906194c291450b SHA256 5a0796b4b7617b267daa23b641dc1565af13b634dadac5b5ff02aa4522bf7dcb
 MISC metadata.xml 684 RMD160 d2da359b5a70a1ea21b0ed25fb211a6994b93f17 SHA1 f76568a11d5beb77d678b6ad9892df300c31ff97 SHA256 81dc22d39c8fb53718bb0b8d336961125313b461905480f5de0d64ac0dd10031
 -----BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.16 (GNU/Linux)
+Version: GnuPG v2.0.17 (GNU/Linux)
 
-iQEcBAEBAgAGBQJNX9r9AAoJEOeBhlrCAAWGJ+gH/j3HBUWiJfdlba7ASQ9/iW2b
-nAMQHst016z0ONT4K16F8EOHsYskbGzjR+0IJdaio3Ah2uqkZM94EGxWzi7i0PRT
-aidSacN3xm8gUdlQcKi1PUDljISnwyKKRtNHLEQDyqg/HzV7goyNWS6LyeBYpMzd
-QlNKZcc51xWFN5MsvCHVTbYY/dO46GuD6Br4qYa/ZdThWSISxkR6ZPNuOV2H/M5o
-w56T4SiLeEVpFNXPSeyhbH7FGAv3FU0okBfW9DU/gaXzU0hL/I8BF4c1yEVOvEOw
-S+CQAXWeH5d6p4cVCFmfQCTQ+EtZr5oXYyc34ZjDES65f+N7fBdShicJQ2XC3eo=
-=dSRw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+=8pCd
 -----END PGP SIGNATURE-----
diff --git a/sci-chemistry/gromacs/gromacs-4.5.9999.ebuild b/sci-chemistry/gromacs/gromacs-4.5.9999.ebuild
index ac987b206..111bb375b 100644
--- a/sci-chemistry/gromacs/gromacs-4.5.9999.ebuild
+++ b/sci-chemistry/gromacs/gromacs-4.5.9999.ebuild
@@ -8,7 +8,7 @@ LIBTOOLIZE="true"
 TEST_PV="4.0.4"
 MANUAL_PV="4.5.3"
 
-inherit autotools-utils bash-completion flag-o-matic multilib toolchain-funcs
+inherit autotools-utils bash-completion eutils flag-o-matic multilib toolchain-funcs
 
 SRC_URI="test? ( ftp://ftp.gromacs.org/pub/tests/gmxtest-${TEST_PV}.tgz )
 		doc? (
@@ -52,6 +52,9 @@ QA_EXECSTACK="usr/lib/libgmx.so.*
 	usr/lib/libgmx_d.so.*"
 
 src_prepare() {
+	#add user patches from /etc/portage/patches/sci-chemistry/gromacs
+	epatch_user
+
 	if use mpi && use threads; then
 		elog "mdrun uses only threads OR mpi, and gromacs favours the"
 		elog "use of mpi over threads, so a mpi-version of mdrun will"
diff --git a/sci-chemistry/gromacs/gromacs-9999.ebuild b/sci-chemistry/gromacs/gromacs-9999.ebuild
index b6f511949..15dbf24ab 100644
--- a/sci-chemistry/gromacs/gromacs-9999.ebuild
+++ b/sci-chemistry/gromacs/gromacs-9999.ebuild
@@ -10,7 +10,7 @@ TEST_PV="4.0.4"
 EGIT_REPO_URI="git://git.gromacs.org/gromacs"
 EGIT_BRANCH="master"
 
-inherit bash-completion cmake-utils git multilib toolchain-funcs
+inherit bash-completion cmake-utils eutils git multilib toolchain-funcs
 
 DESCRIPTION="The ultimate molecular dynamics simulation package"
 HOMEPAGE="http://www.gromacs.org/"
@@ -44,6 +44,9 @@ QA_EXECSTACK="usr/lib/libgmx.so.*
 	usr/lib/libgmx_d.so.*"
 
 src_prepare() {
+	#add user patches from /etc/portage/patches/sci-chemistry/gromacs
+	epatch_user
+
 	if use mpi && use threads; then
 		elog "mdrun uses only threads OR mpi, and gromacs favours the"
 		elog "use of mpi over threads, so a mpi-version of mdrun will"