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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2015-05-05 16:48:17 +0200 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2015-05-05 16:48:17 +0200 |
| commit | 3503dcaaadb870f97b2719158c2fcd384f7d9660 (patch) | |
| tree | 23493b1ac3146304fe1223945ebeeb6190ff3114 /sci-biology/prokka | |
| parent | sci-biology/exomiser-bin: new package (diff) | |
| download | sci-3503dcaaadb870f97b2719158c2fcd384f7d9660.tar.gz sci-3503dcaaadb870f97b2719158c2fcd384f7d9660.tar.bz2 sci-3503dcaaadb870f97b2719158c2fcd384f7d9660.zip | |
sci-biology/prokka: new package
Package-Manager: portage-2.2.18
Diffstat (limited to 'sci-biology/prokka')
| -rw-r--r-- | sci-biology/prokka/ChangeLog | 9 | ||||
| -rw-r--r-- | sci-biology/prokka/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/prokka/metadata.xml | 9 | ||||
| -rw-r--r-- | sci-biology/prokka/prokka-1.11.ebuild | 31 |
4 files changed, 50 insertions, 0 deletions
diff --git a/sci-biology/prokka/ChangeLog b/sci-biology/prokka/ChangeLog new file mode 100644 index 000000000..4f5235a22 --- /dev/null +++ b/sci-biology/prokka/ChangeLog @@ -0,0 +1,9 @@ +# ChangeLog for sci-biology/prokka +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*prokka-1.11 (05 May 2015) + + 05 May 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +metadata.xml, + +prokka-1.11.ebuild: + sci-biology/prokka: new package diff --git a/sci-biology/prokka/Manifest b/sci-biology/prokka/Manifest new file mode 100644 index 000000000..0ce314c87 --- /dev/null +++ b/sci-biology/prokka/Manifest @@ -0,0 +1 @@ +DIST prokka-1.11.tar.gz 359226217 SHA256 ee18146c768fe6ac8e6c9e28bb35f686a5b79d5d5362c4b7665f6a33978101ae SHA512 7b35d340ca07685886ff9ef97f0d40a28f05bc378a407a0349b06c8be9df005c4030b205a93985ec691fac4b6442a607f8723f3ca8f2066704f15b8667476034 WHIRLPOOL 075807739662e9a8c450f1706923ba2bd230b50dd342524e4d54de29e08ad526934c16271715451f2cc1766a5e79efdf614a902c8cc9830bc24ef287dafaa839 diff --git a/sci-biology/prokka/metadata.xml b/sci-biology/prokka/metadata.xml new file mode 100644 index 000000000..2bc893037 --- /dev/null +++ b/sci-biology/prokka/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>mmokrejs@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata> diff --git a/sci-biology/prokka/prokka-1.11.ebuild b/sci-biology/prokka/prokka-1.11.ebuild new file mode 100644 index 000000000..8fc53c50a --- /dev/null +++ b/sci-biology/prokka/prokka-1.11.ebuild @@ -0,0 +1,31 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +DESCRIPTION="Prokaryotic whole genome annotation pipeline" +HOMEPAGE="http://www.bioinformatics.net.au/software.prokka.shtml" +SRC_URI="http://www.vicbioinformatics.com/prokka-"${PV}".tar.gz" +# 360MB + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND} + sys-process/parallel + sci-biology/bioperl + sci-biology/prodigal + sci-biology/ncbi-tools++ + sci-biology/hmmer + sci-biology/infernal + sci-biology/exonerate + sci-biology/barrnap" +# >=hmmer-3.1 +# Aragorn +# RNAmmer +# SignalP >= 4.0 +# sequin |