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| author |   Andrew Ammerlaan <andrewammerlaan@riseup.net> | 2021-01-19 13:28:04 +0100 |
|---|---|---|
| committer | Andrew Ammerlaan <andrewammerlaan@riseup.net> | 2021-01-19 13:28:14 +0100 |
| commit | f72d427f9d61ba0b6d38fccd42edf1b041175191 (patch) | |
| tree | dff34fee293778e7856380936e732c3313b1f646 /sci-biology/kraken | |
| parent | sci-biology/lucy: fix fetch, EAPI bump (diff) | |
| download | sci-f72d427f9d61ba0b6d38fccd42edf1b041175191.tar.gz sci-f72d427f9d61ba0b6d38fccd42edf1b041175191.tar.bz2 sci-f72d427f9d61ba0b6d38fccd42edf1b041175191.zip | |
sci-biology/kraken: version bump, EAPI bump, use https
Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Diffstat (limited to 'sci-biology/kraken')
| -rw-r--r-- | sci-biology/kraken/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/kraken/kraken-1.1.1.ebuild (renamed from sci-biology/kraken/kraken-1.0.ebuild) | 21 |
2 files changed, 13 insertions, 12 deletions
diff --git a/sci-biology/kraken/Manifest b/sci-biology/kraken/Manifest index d27cdc56a..d3d57d722 100644 --- a/sci-biology/kraken/Manifest +++ b/sci-biology/kraken/Manifest @@ -1,2 +1,2 @@ -DIST kraken-1.0.tar.gz 407131 BLAKE2B 948d64b14432f0d7327fa98a0f3a647b8a5e08d4979c6636d6a9924a83adcb5e3c96925815db41513ebbb7d398920e23ae059f2ee33725e2edece77edb1477d5 SHA512 3916890132e5573e72b0b4101ed5cb5e4c99bf9e5c799635002c6c4b23c266ea390fbd641916661ffc31f4e673c0a9d762be01c5094ba9b2241891b3aa5f49f6 -DIST kraken-1.0_MANUAL.html 46202 BLAKE2B 8dc02ba8eb1ee156ce0476511f34b152e4bbc73e970806e03c69bcf896b6027f75b9c4ff7d6e4df5fc517c8f53c135f78e8094a3c3c36dc98554b47ffa3f2bea SHA512 cfd0ac55ad662b8568683ee0fe96ed6c57a6c34b0804f120b2189e25408a9ae4e0740f58ab9314ad4a6677fb3808ad54a8a3bd410df7761b6e94529df1ee697b +DIST kraken-1.1.1.tar.gz 73924 BLAKE2B 859072f61ec9b74e2f308f3fd1dfedd7d795b5b11a5ff387d31236a8026ab0cdb756c425a946176ba7aa65517e89750df8b5274594e66aeedf3b70015fa9e508 SHA512 381b36dc53e229ace0c74ac7f571167260aa8fdc80459d6db8f8dd4ba1b870790b6b6b60d98827516b240527b880b752c18686886a47c46218eb0b02d13f6bb2 +DIST kraken-1.1.1_MANUAL.html 46202 BLAKE2B 8dc02ba8eb1ee156ce0476511f34b152e4bbc73e970806e03c69bcf896b6027f75b9c4ff7d6e4df5fc517c8f53c135f78e8094a3c3c36dc98554b47ffa3f2bea SHA512 cfd0ac55ad662b8568683ee0fe96ed6c57a6c34b0804f120b2189e25408a9ae4e0740f58ab9314ad4a6677fb3808ad54a8a3bd410df7761b6e94529df1ee697b diff --git a/sci-biology/kraken/kraken-1.0.ebuild b/sci-biology/kraken/kraken-1.1.1.ebuild index 2a021a329..47ca1b86e 100644 --- a/sci-biology/kraken/kraken-1.0.ebuild +++ b/sci-biology/kraken/kraken-1.1.1.ebuild @@ -1,29 +1,30 @@ -# Copyright 1999-2020 Gentoo Authors +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=5 +EAPI=7 -PERL_EXPORT_PHASE_FUNCTIONS=no inherit perl-module DESCRIPTION="Detect sequencing project contaminants by mapping reads to taxonomic groups" -HOMEPAGE="http://ccb.jhu.edu/software/kraken - https://genomebiology.com/2014/15/3/R46" +HOMEPAGE="https://ccb.jhu.edu/software/kraken" SRC_URI="https://github.com/DerrickWood/kraken/archive/v1.0.tar.gz -> ${P}.tar.gz - http://ccb.jhu.edu/software/kraken/MANUAL.html -> ${P}_MANUAL.html" + https://ccb.jhu.edu/software/kraken/MANUAL.html -> ${P}_MANUAL.html" LICENSE="GPL-3" SLOT="0" KEYWORDS="~amd64" -IUSE="" DEPEND="" RDEPEND="${DEPEND} dev-lang/perl net-misc/wget - sci-biology/jellyfish:1" + sci-biology/jellyfish:1 +" + +S="${WORKDIR}/${PN}-1.0" src_prepare(){ + default sed -e 's/^CXX = /CXX ?= /' -e 's/^CXXFLAGS = /CXXFLAGS ?= /' -i src/Makefile || die echo "exit 0" >> install_kraken.sh || die } @@ -47,7 +48,7 @@ src_install(){ pkg_postinst(){ ewarn "Kraken may optionally need <=sci-biology/jellyfish-2 if you want to build your own dbs" ewarn "Kraken needs high network bandwidth for its huge downloads, be sure to read" - ewarn "http://ccb.jhu.edu/software/kraken and prepare at least 160GB of disk space" + ewarn "https://ccb.jhu.edu/software/kraken and prepare at least 160GB of disk space" ewarn "Consider placing the db files in ramfs (needs root permissions) taking >75GB RAM" - ewarn "Results can be visualized with http://sourceforge.net/p/krona/home/krona" + ewarn "Results can be visualized with https://sourceforge.net/p/krona/home/krona" } |