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| author |   Horea Christian <chr@chymera.eu> | 2023-03-25 01:16:31 -0400 |
|---|---|---|
| committer | Horea Christian <chr@chymera.eu> | 2023-03-25 01:16:31 -0400 |
| commit | 2db7a214c3b7d8da2111658975f134527c6b84c4 (patch) | |
| tree | c937682bfddef1b284c57b508e039cc2b4d4cf7b /sci-biology/gffutils | |
| parent | sci-biology/gffutils: update EAPI 7 -> 8 (diff) | |
| download | sci-2db7a214c3b7d8da2111658975f134527c6b84c4.tar.gz sci-2db7a214c3b7d8da2111658975f134527c6b84c4.tar.bz2 sci-2db7a214c3b7d8da2111658975f134527c6b84c4.zip | |
sci-biology/gffutils: add 0.11.1
Signed-off-by: Horea Christian <chr@chymera.eu>
Diffstat (limited to 'sci-biology/gffutils')
| -rw-r--r-- | sci-biology/gffutils/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/gffutils/gffutils-0.11.1.ebuild | 41 |
2 files changed, 42 insertions, 0 deletions
diff --git a/sci-biology/gffutils/Manifest b/sci-biology/gffutils/Manifest index a697f0784..03792fef7 100644 --- a/sci-biology/gffutils/Manifest +++ b/sci-biology/gffutils/Manifest @@ -1,2 +1,3 @@ DIST gffutils-0.10.1.tar.gz 1636628 BLAKE2B ca539bdcf2a2e199d264194e23c3d1b52e1f4b141d2a43a1346024c008020ff531d5b642c63bd4c3a34cd97de2a399975eea430163f16218f5a1d671521e69b6 SHA512 21f56e013abdf1368756db97afcea0be6d0edc56cb0636e9e796603959570c7c3ba0cecf1bf90a69ab7afd2c4c831d3d42b92960a8c34f9b645be7e47d42190a +DIST gffutils-0.11.1.tar.gz 1646787 BLAKE2B 96e573cf366844c8a348aff062362aeaea1a46360c74ae75a2d8d730d37cd69f0e6c658d1d0f348ca8f8e8c49d9a7c923c52619341e8d2dabd92a329fb43b677 SHA512 1844e9d7626a800549def2ba09b4d97e60c8a1a0fce2da60d7841cf4c4347da50aea850e8c1a67b07de08d4e6cf737b0d5c2bf8eb5fc87900427866282e82bdb DIST gffutils-0.8.7.1.tar.gz 1541112 BLAKE2B 65676cf0b910ad0fee478315409dba808a13d11922d0ab254694939ebd01f10b62c2237ae517d941999c6cf9bcb08d903bde8b9055bcf7a67116e14439ec4cca SHA512 4739dd402963d402f34a5e3da9cca7ba9586dcbbe62efbad89bf85c5dbb0feff0e260eea20563340911756e6817289c1556c261ef973a61f4e66e50efdfc8aa8 diff --git a/sci-biology/gffutils/gffutils-0.11.1.ebuild b/sci-biology/gffutils/gffutils-0.11.1.ebuild new file mode 100644 index 000000000..0c92f3468 --- /dev/null +++ b/sci-biology/gffutils/gffutils-0.11.1.ebuild @@ -0,0 +1,41 @@ +# Copyright 1999-2023 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +PYTHON_COMPAT=( python3_{9..11} ) + +inherit distutils-r1 + +DESCRIPTION="GFF and GTF file manipulation and interconversion" +HOMEPAGE="https://gffutils.readthedocs.io/en/latest/" +SRC_URI="https://github.com/daler/gffutils/archive/v${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="test" +# Nose tests no longer supported, migration on next release +#RESTRICT="test" + +RDEPEND=" + dev-python/simplejson[${PYTHON_USEDEP}] + dev-python/argh[${PYTHON_USEDEP}] + dev-python/argcomplete[${PYTHON_USEDEP}] + sci-biology/biopython[${PYTHON_USEDEP}] + sci-biology/pybedtools[${PYTHON_USEDEP}] + sci-biology/pyfaidx[${PYTHON_USEDEP}] +" +DEPEND="${RDEPEND}" + +python_prepare_all() { + if use test; then + sed -i -e "s:/tmp/gffutils-test:${T}:g" gffutils/test/test.py || die + fi + distutils-r1_python_prepare_all +} + +python_test() { + distutils_install_for_testing + nosetests -v -x --with-doctest -a '!slow' || die +} |