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import re, os
from ebuild import *
from filetricks import *
from settings import *
#figure out the location of the portage tree, or return it if we already know it
portage_location=None
def portage_dir():
global portage_location
if portage_location!=None: #we already know
return portage_location
if os.path.exists('/etc/paludis/repositories/gentoo.conf'): #paludis stores repository data here
conffile=open('/etc/paludis/repositories/gentoo.conf')
for line in conffile:
if 'location'==line[:len('location')]:
portage_location=re.sub('\$\{.+?\}','',line[line.find('=')+1:]).strip() #remove ${ROOT} and other variables (lucky guess, lol)
elif os.path.exists('/etc/make.conf'): #portage stores portage location here
conffile=open('/etc/make.conf')
for line in conffile:
find_portdir=re.match('\s*PORTDIR\s*=\s*"?(.*)"?\s*',line)
if find_portdir:
portage_location=find_portdir.group(1).strip()
else:
portage_location='/usr/portage'
elif os.path.exists('/usr/portage'): #default location
portage_location='/usr/portage'
else:
raise RuntimeError('Could not deduce portage location')
return portage_location
#list packages in the portage tree
def portage_possible_deps(_portage_packages={}):
if len(_portage_packages): return _portage_packages
portdir=portage_dir()
categories_file=open(os.path.join(portdir,'profiles','categories'))
categories=[x.strip() for x in categories_file.readlines()]
for category in categories:
packages=[x for x in os.listdir(os.path.join(portdir,category)) if
os.path.isdir(os.path.join(portdir,category,x)) and x[0]!='.'] #exclude hidden dirs
for package in packages:
if package in _portage_packages: #already added, add to list
_portage_packages[package].append(category+'/'+package)
else:
_portage_packages[package]=[category+'/'+package,]
return _portage_packages
def pmsify_license_field(license_list):
portdir=portage_dir()
available_licenses=os.listdir(os.path.join(portdir,'licenses'))
#note: the following returns a list of tuples
matches=re.findall(r'\s*([^|]+)\s*',license_list) #split into licenses + versions
licenses=[]
for license_part in matches: #process each license option
if license_part[:4]=='file': #license field referse to a file
#licenses.append(license_part) #we'll have to somehow install this file...
continue
parse=re.match(r'(.+)\(\W*([^()]+?)\)',license_part)
try_license=None
if parse: #versioned license
license_name=parse.group(1).strip()
version=parse.group(2).strip()
try_license=license_name+'-'+version
else: #perhaps we just want version 1?
try_license=license_part+'-1'
for license in available_licenses:
if license==license_part or try_license==license:
licenses.append(license)
break
else:
licenses.append('as-is') #unknown
return licenses
def pmsify_package_name(name):
if len(name)==0:
raise RuntimeError('Empty package name')
name=re.sub('[^a-zA-Z0-9+_-]','',name) #name may only contain these characters
if not re.match('[a-zA-Z0-9+_].*',name): #package name must start with [a-zA-Z0-9+_]
name='_'+name
if re.match('.*-[0-9]+',name): #package name may not end in hyphen followed by integer
name=name+'_'
return name
def pmsify_package_version(version_str):
return version_str.replace('-','.') #some CRAN-style versions have the form 0.1-1, which we transform into 0.1.1
def listify_package_list(package_list):
matches=re.findall(r'\s*([^,)(]+?)\s*(\([^()]+?\))?\s*([,)(]|$)',package_list) #split into packages + versions
packages=[]
for package_part in matches: #process each package match
#package_part[0] is package name
#package_part[1] is package version matcher
if len(package_part[0]): #if we see a package name
packages.append(package_part[0])
return packages
R_core_packages=['base','datasets','grDevices','graphics','grid','methods','splines',
'stats','stats4','tcltk','tools','utils',]
R_recommended_packages=['KernSmooth','MASS','Matrix','base','boot','class','cluster',
'codetools','datasets','foreign','grDevices','graphics','grid','lattice','methods',
'mgcv','nlme','nnet','rpart','spatial','splines','stats','stats4','survival','tcltk',
'tools','utils',]
def pmsify_package_list(package_list, cran_packages):
#note: the following returns a list of tuples
pms_packages=[]
portage_packages=portage_possible_deps()
for package in package_list:
if package=='tcltk':
pms_packages.append('dev-lang/R[tk]')
elif package in R_core_packages:
pms_packages.append('dev-lang/R')
elif package in R_recommended_packages:
pms_packages.append('dev-lang/R[-minimal]')
elif package in cran_packages:
pms_packages.append('dev-R/'+pmsify_package_name(package))
elif package in portage_packages:
pms_packages.append(portage_packages[package][0]) #get qualified package name from the portage tree
else: #fallback to dev-R and assume it's in another R package repository
pms_packages.append('dev-R/'+pmsify_package_name(package))
return pms_packages
#Parse package options into values we can work with in accordance with PMS
def pmsify_package_data(data,remote_repository):
pms_pkg=Ebuild()
pms_pkg.cran_data=data
e_vars=pms_pkg.ebuild_vars
#fix settings:
if 'package' not in data:
print data
raise RuntimeError("No package name")
e_vars['pn']=pmsify_package_name(data['package'])
if 'version' not in data: #set a version even if we have none
e_vars['pv']='0'
else:
e_vars['pv']=pmsify_package_version(data['version'])
if 'depends' in data:
deps=listify_package_list(data['depends'])
else: #some packages don't set dependencies, so force dependency on R
deps=['R',]
e_vars['depend']=deps
e_vars['pdepend']=[]
e_vars['rdepend']=deps
e_vars['iuse']="doc"
e_vars['keywords']="~x86 ~amd64"
if 'description' in data:
e_vars['description']=data['description'].strip().replace('\n',' ')
else:
e_vars['description']=e_vars['pn']
if 'license' in data: #fixme parse license data
e_vars['license']=pmsify_license_field(data['license'])
e_vars['src_uri']=remote_repository+'/src/contrib/'+data['package']+'_'+data['version']+'.tar.gz'
return pms_pkg
#read sync'ed CRAN data into RAM to PMS-style packages
def read_packages(package_filename,local_repository):
packages_file=open(package_filename,"r")
file_parts=EmptyLinesFile(packages_file) #this is where we split the PACKAGES file into several file parts
packages={}
import rfc822
repository_file=open(os.path.join(local_repository,REPO_MYDIR,'remote_uri'),'r')
remote_uri=repository_file.read().strip()
#read PACKAGES file
while not file_parts.eof:
cran_package=dict(rfc822.Message(file_parts).items()) #read part of PACKAGES file
if len(cran_package):
pms_package=pmsify_package_data(cran_package,remote_uri) #fix values
packages[pms_package.cran_data['package']]=pms_package #store in dict
#post-process dependency data, transform to qualified package names
cran_packages=packages.keys()
for cran_name, package in packages.iteritems():
deps=pmsify_package_list(package.ebuild_vars['depend'],cran_packages)
package.ebuild_vars['depend']=deps
package.ebuild_vars['rdepend']=deps
package.ebuild_vars['pdepend']=deps
return packages.values()
def find_package(repo_location,package_name):
packages=read_packages(os.path.join(repo_location,REPO_MYDIR,'PACKAGES'),repo_location)
for package in packages:
if package.ebuild_vars['pn']==package_name:
return package
raise ValueError("Package not found")
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