initial commit

author: Benda Xu <heroxbd@gentoo.org> 2012-05-18 17:36:48 +0900
committer: Benda Xu <heroxbd@gentoo.org> 2012-05-18 17:36:48 +0900
commit: fb26a5c2df5e1fde31491ebeff69112712008353 (patch)
tree: 2f8414516404877c9df8e29df0c2b2536ab2bd5c /sci-libs
download: android-fb26a5c2df5e1fde31491ebeff69112712008353.tar.gz
android-fb26a5c2df5e1fde31491ebeff69112712008353.tar.bz2
android-fb26a5c2df5e1fde31491ebeff69112712008353.zip
31 files changed, 2449 insertions, 0 deletions
diff --git a/sci-libs/hdf5/ChangeLog b/sci-libs/hdf5/ChangeLog
new file mode 100644
index 0000000..1c07588
--- /dev/null
+++ b/sci-libs/hdf5/ChangeLog
@@ -0,0 +1,386 @@
+# ChangeLog for sci-libs/hdf5
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/hdf5/ChangeLog,v 1.73 2011/07/08 11:24:29 xarthisius Exp $
+
+  08 Jul 2011; Kacper Kowalik <xarthisius@gentoo.org> hdf5-1.8.7.ebuild:
+  Export mpi wrappers again due to clash with fortran-2.eclass. Fixes bug
+  374431 by Ruggero Morsucci <mors_1tflops@yahoo.it>
+
+  06 Jul 2011; Kacper Kowalik <xarthisius@gentoo.org> hdf5-1.8.4-r1.ebuild,
+  hdf5-1.8.6.ebuild, hdf5-1.8.7.ebuild:
+  Fix use fortran check in pkg_setup
+
+  26 Jun 2011; Justin Lecher <jlec@gentoo.org> hdf5-1.8.4-r1.ebuild,
+  hdf5-1.8.6.ebuild, hdf5-1.8.7.ebuild, metadata.xml:
+  Bumped EAPI and corrected slots
+
+  22 Jun 2011; Justin Lecher <jlec@gentoo.org> hdf5-1.8.4-r1.ebuild,
+  hdf5-1.8.6.ebuild, hdf5-1.8.7.ebuild:
+  Conditionally check for fortran support, #372557
+
+  21 Jun 2011; Justin Lecher <jlec@gentoo.org> hdf5-1.8.4-r1.ebuild,
+  hdf5-1.8.6.ebuild, hdf5-1.8.7.ebuild:
+  Add dependency on virtual/fortran
+
+  21 Jun 2011; Justin Lecher <jlec@gentoo.org> hdf5-1.8.4-r1.ebuild,
+  hdf5-1.8.6.ebuild, hdf5-1.8.7.ebuild:
+  Added fortran-2.eclass support
+
+  08 Jun 2011; Jeroen Roovers <jer@gentoo.org> hdf5-1.8.4-r1.ebuild,
+  hdf5-1.8.6.ebuild, hdf5-1.8.7.ebuild:
+  Remove HPPA keywording.
+
+*hdf5-1.8.7 (13 May 2011)
+
+  13 May 2011; Kacper Kowalik <xarthisius@gentoo.org> -hdf5-1.8.5_p1-r1.ebuild,
+  +hdf5-1.8.7.ebuild:
+  Version bump. Exporting mpi wrappers is no longer necessary as hdf5 defaults
+  to them if --enable-parallel is set. Drop old.
+
+*hdf5-1.8.6 (19 Feb 2011)
+
+  19 Feb 2011; Kacper Kowalik <xarthisius@gentoo.org> +hdf5-1.8.6.ebuild:
+  Version bump
+
+*hdf5-1.8.5_p1-r1 (05 Nov 2010)
+
+  05 Nov 2010; Kacper Kowalik <xarthisius@gentoo.org> -hdf5-1.8.5_p1.ebuild,
+  +hdf5-1.8.5_p1-r1.ebuild, +files/hdf5-1.8.5-implicits.patch:
+  Fix implicits.
+
+*hdf5-1.8.5_p1 (05 Nov 2010)
+
+  05 Nov 2010; Kacper Kowalik <xarthisius@gentoo.org> -hdf5-1.8.5.ebuild,
+  +hdf5-1.8.5_p1.ebuild:
+  Version bump. Drop old.
+
+  09 Jul 2010; Kacper Kowalik <xarthisius@gentoo.org> -hdf5-1.6.4.ebuild,
+  -files/hdf5-1.8.3-destdir.patch, -files/hdf5-1.8.3-gnutools.patch,
+  -files/hdf5-1.8.3-signal.patch, metadata.xml:
+  Remove ancient
+
+  09 Jul 2010; Samuli Suominen <ssuominen@gentoo.org> hdf5-1.8.4-r1.ebuild:
+  ppc64 stable wrt #299710
+
+  03 Jul 2010; Kacper Kowalik <xarthisius@gentoo.org> hdf5-1.8.5.ebuild,
+  metadata.xml:
+  Adding debug flag
+
+  20 Jun 2010; Kacper Kowalik <xarthisius@gentoo.org>
+  -files/hdf5-1.6.6-gcc4.3.patch, -hdf5-1.6.7.ebuild,
+  -files/hdf5-gcc4.3.3-fix.patch, -hdf5-1.8.4_p1.ebuild,
+  -files/hdf5-mpich2.patch, -hdf5-1.6.2.ebuild:
+  Removing old ebuild and obsolete patches
+
+  20 Jun 2010; Raúl Porcel <armin76@gentoo.org> hdf5-1.8.4-r1.ebuild:
+  alpha/ia64/sparc stable wrt #299710
+
+  17 Jun 2010; Justin Bronder <jsbronder@gentoo.org> hdf5-1.8.4-r1.ebuild:
+  Remove dep on sys-cluster/lam-mpi, see #324415.
+
+*hdf5-1.8.5 (16 Jun 2010)
+
+  16 Jun 2010; Kacper Kowalik <xarthisius@gentoo.org> +hdf5-1.8.5.ebuild,
+  +files/hdf5-1.8.5-noreturn.patch:
+  Version bump. Fixes bug 324119
+
+  04 May 2010; Sébastien Fabbro <bicatali@gentoo.org> hdf5-1.8.4-r1.ebuild:
+  Changed SRC_URI, per bug #317649
+
+*hdf5-1.8.4_p1 (04 May 2010)
+
+  04 May 2010; Sébastien Fabbro <bicatali@gentoo.org>
+  -hdf5-1.6.5-r1.ebuild, -hdf5-1.6.6.ebuild, -hdf5-1.8.3-r1.ebuild,
+  files/hdf5-1.8.3-as-needed.patch, +hdf5-1.8.4_p1.ebuild:
+  Version bump. Important update mainly for netcdf4 users
+
+  10 Feb 2010; Sébastien Fabbro <bicatali@gentoo.org> hdf5-1.8.4-r1.ebuild:
+  Added some warnings for mpi
+
+  05 Feb 2010; Raúl Porcel <armin76@gentoo.org> hdf5-1.8.4-r1.ebuild,
+  +files/hdf5-1.8.4-sigbus.patch:
+  Add patch from debian for unaligned acceses, alpha/ia64/sparc stable wrt
+  #299710
+
+  21 Jan 2010; Jeroen Roovers <jer@gentoo.org> hdf5-1.8.4-r1.ebuild:
+  Stable for HPPA (bug #299710).
+
+  20 Jan 2010; Markus Meier <maekke@gentoo.org> hdf5-1.8.4-r1.ebuild:
+  amd64 stable, bug #299710
+
+  19 Jan 2010; nixnut <nixnut@gentoo.org> hdf5-1.8.4-r1.ebuild:
+  ppc stable #299710
+
+  15 Jan 2010; Christian Faulhammer <fauli@gentoo.org> hdf5-1.8.4-r1.ebuild:
+  stable x86, bug 299710
+
+  11 Dec 2009; Sébastien Fabbro <bicatali@gentoo.org>
+  files/hdf5-1.8.3-destdir.patch, hdf5-1.8.4-r1.ebuild:
+  Removed destdir patch, now done with sed's. This also solves bug #286492
+
+*hdf5-1.8.4-r1 (03 Dec 2009)
+
+  03 Dec 2009; Sébastien Fabbro <bicatali@gentoo.org> -hdf5-1.8.4.ebuild,
+  +hdf5-1.8.4-r1.ebuild, +files/hdf5-1.8.4-gnutools.patch,
+  +files/hdf5-1.8.4-scaleoffset.patch:
+  Forced compilation -O0 on some buggy files, fixed some tests,
+  re-introduced the fortran+mpi possibility, and keyworded ia64. Thanks
+  Kacper Kowalik to do all this.
+
+  24 Nov 2009; Markus Dittrich <markusle@gentoo.org> hdf5-1.6.7.ebuild:
+  Added a few improvements.
+
+*hdf5-1.8.4 (20 Nov 2009)
+
+  20 Nov 2009; Sébastien Fabbro <bicatali@gentoo.org> +hdf5-1.8.4.ebuild:
+  Version bump. mpi and fortran do not compile together, so disable
+  simultaneous mpi/fortran uses until patch
+
+  12 Oct 2009; Jeroen Roovers <jer@gentoo.org> hdf5-1.8.3-r1.ebuild:
+  Stable for HPPA (bug #245707).
+
+  02 Oct 2009; Sébastien Fabbro <bicatali@gentoo.org> hdf5-1.8.3-r1.ebuild,
+  files/hdf5-1.8.3-destdir.patch:
+  Set CC=mpicc when building with mpi enabled (bug #286353), added
+  --enabled-shared which was disabled with mpi enabled (bug #287124), and
+  added slashes in destdir patch
+
+  01 Oct 2009; Tobias Klausmann <klausman@gentoo.org> hdf5-1.8.3-r1.ebuild:
+  Keyworded on alpha, bug #285148
+
+  23 Sep 2009; Patrick Lauer <patrick@gentoo.org> hdf5-1.6.6.ebuild,
+  hdf5-1.6.7.ebuild:
+  Remove virtual/libc
+
+  17 Sep 2009; Sébastien Fabbro <bicatali@gentoo.org> hdf5-1.8.3-r1.ebuild:
+  Removed the forced PIC configure line which was compiling static libraries
+  with PIC
+
+*hdf5-1.8.3-r1 (15 Sep 2009)
+
+  15 Sep 2009; Steve Arnold <nerdboy@gentoo.org> -hdf5-1.8.3.ebuild,
+  +hdf5-1.8.3-r1.ebuild:
+  Updated to install the shared libs correctly.  This allows other packages
+  that link against hdf5 to actually build...
+
+  11 Sep 2009; Sébastien Fabbro <bicatali@gentoo.org> hdf5-1.8.3.ebuild,
+  files/hdf5-1.8.3-as-needed.patch:
+  More as-needed fixes, thanks to Kacper Kowalik closing bug #284518
+
+  24 Aug 2009; Sébastien Fabbro <bicatali@gentoo.org> hdf5-1.8.3.ebuild:
+  Replaced use-based dependency for virtual by atom based ones. Thanks
+  Mr_Bones.
+
+*hdf5-1.8.3 (18 Aug 2009)
+
+  18 Aug 2009; Sébastien Fabbro <bicatali@gentoo.org> +hdf5-1.8.3.ebuild,
+  +files/hdf5-1.8.3-as-needed.patch, +files/hdf5-1.8.3-destdir.patch,
+  +files/hdf5-1.8.3-gnutools.patch, +files/hdf5-1.8.3-includes.patch,
+  +files/hdf5-1.8.3-noreturn.patch, +files/hdf5-1.8.3-signal.patch,
+  metadata.xml:
+  Version bump. Many fixes and cleanups, rewrote ebuild from scratch,
+  merging from science overlay
+
+  04 Feb 2009; Patrick Lauer <patrick@gentoo.org>
+  +files/hdf5-gcc4.3.3-fix.patch, hdf5-1.6.7.ebuild:
+  fortify_sources fix, patch from Simon C. Ion, closes #257177
+
+  23 Jan 2009; Steve Arnold <nerdboy@gentoo.org> hdf5-1.6.7.ebuild:
+  Updated for upstream changes in test-tools and a more appropriate sed 
+  invocation.
+
+*hdf5-1.6.7 (17 Aug 2008)
+
+  17 Aug 2008; Markus Dittrich <markusle@gentoo.org> -hdf5-1.6.5.ebuild,
+  +hdf5-1.6.7.ebuild:
+  Version bump and replaced "which" with "type -p". Removed obsolete
+  ebuild.
+
+  07 Aug 2008; Ulrich Mueller <ulm@gentoo.org> metadata.xml:
+  Add USE flag description to metadata wrt GLEP 56.
+
+  22 Jun 2008; Markus Dittrich <markusle@gentoo.org>
+  +files/hdf5-1.6.6-gcc4.3.patch, hdf5-1.6.6.ebuild:
+  Added patch to allow compilation with gcc-4.3 (fixes bug #228341). 
+  Thanks much to Pinky <master_up@post.cz> for his patch.
+
+  13 Jun 2008; Markus Dittrich <markusle@gentoo.org> hdf5-1.6.6.ebuild:
+  Removed sparc specific mask of mpi in DEPEND in favor of package.use.mask
+  (see bug #217854).
+
+  06 Jun 2008; Markus Dittrich <markusle@gentoo.org> hdf5-1.6.5-r1.ebuild,
+  hdf5-1.6.6.ebuild:
+  Removed quotes around myconf since they break configure 
+  (see bug #225021). Thanks much to Nuno Sucena Almeida 
+  <slug@aeminium.org> for pointing this out.
+
+  04 Jun 2008; Steve Arnold <nerdboy@gentoo.org> hdf5-1.6.6.ebuild:
+  Adding ~hppa back in (doh! needed a full tree updated)
+
+  04 Jun 2008; Steve Arnold <nerdboy@gentoo.org> hdf5-1.6.6.ebuild:
+  Fixed some build and test script issues, and updated the test function so 
+  the MPI tests work on a single CPU box.
+
+  15 Apr 2008; Markus Dittrich <markusle@gentoo.org> hdf5-1.6.6.ebuild:
+  Fixed messed up symlinks for libh5test.so (see bug #217720).
+  Also re-added spark KEYWORD without mpi support for now.
+
+  09 Apr 2008; Jeroen Roovers <jer@gentoo.org> hdf5-1.6.6.ebuild:
+  Marked ~hppa (bug #216855).
+
+  04 Feb 2008; Steve Arnold <nerdboy@gentoo.org> hdf5-1.6.6.ebuild:
+  fixed QA issues and added additional tools via use flag
+
+  06 Dec 2007; Markus Dittrich <markusle@gentoo.org> hdf5-1.6.6.ebuild:
+  Fixed misplaced quotation mark (fixes bug #201479).
+
+  05 Dec 2007; Markus Dittrich <markusle@gentoo.org> hdf5-1.6.6.ebuild:
+  Removed quotes around myconf since they confuse configure (fixes bug #201205).
+
+*hdf5-1.6.6 (03 Dec 2007)
+
+  03 Dec 2007; Steve Arnold <nerdboy@gentoo.org> +files/hdf5-mpich2.patch,
+  +hdf5-1.6.6.ebuild:
+  Updated to latest upstream release, with mpi fixes, however, this version
+  is locked to mpich2-1.0.6 due to pvfs2, however, sparc is dropped until
+  the parallel I/O thing is worked out with other MPI libs.
+  Tests work, including mpi (but needs testing in a real cluster).
+
+  01 Nov 2006; Donnie Berkholz <dberkholz@gentoo.org>; ChangeLog:
+  Update for my nick change spyderous -> dberkholz.
+
+  13 Jul 2006; Steve Arnold <nerdboy@gentoo.org> hdf5-1.6.5-r1.ebuild:
+  removed pgi fortran detection
+
+  08 Jul 2006; Markus Rothe <corsair@gentoo.org> hdf5-1.6.4.ebuild:
+  Stable on ppc64
+
+  28 Jun 2006; Steve Arnold <nerdboy@gentoo.org> hdf5-1.6.5-r1.ebuild:
+  Reverted to original (and standard) library location; even though it
+  was much tidier, it was causing linkage issues...
+
+*hdf5-1.6.5-r1 (24 Jun 2006)
+
+  24 Jun 2006; Steve Arnold <nerdboy@gentoo.org> +files/mpd.conf,
+  hdf5-1.6.5.ebuild, +hdf5-1.6.5-r1.ebuild:
+  Updated for bug 134439, fortran support, tests, and creeping complexity.
+  Added use flags and logic for incompatible configure options, and support
+  for additional Fortran compilers (currently only tested with gfortran).
+  See comments and einfo for more details.  Backport install fixes.  Also
+  made SHLIB change for issue below (bug #118777).
+
+  14 Jun 2006; Ferris McCormick <fmccor@gentoo.org> hdf5-1.6.5.ebuild:
+  Add ~sparc keyword, closing Bug #118777 --- but please see Comments 4 and 5
+  on the bug for conditions under which hdf5 should be built.  (USE flags and
+  environment variables curiosities.)
+
+*hdf5-1.6.5 (25 May 2006)
+
+  25 May 2006; Steve Arnold <nerdboy@gentoo.org> hdf5-1.6.4.ebuild,
+  +hdf5-1.6.5.ebuild:
+  Early stable bump for gdal (required), plus new testing version
+  (since the only real issue besides the sparc bug was the mpi thing).
+  To do: 1) resolve virtual/mpi issues for ppc64 and others
+	 2) need fix for buss error on sparc
+         3) get szip support working for other arches
+
+  21 May 2006; Steve Arnold <nerdboy@gentoo.org> hdf5-1.6.2.ebuild,
+  hdf5-1.6.4.ebuild:
+  Updated to fix a few minor odds and ends (extra configure options,
+  get_libdir, etc).  Verified working with mpich2-1.0.3 (bug #107161).
+  Need to stablize for gdal; also needs some work on other arches 
+  (eg, the sparc bug #118777).  Go back to virtual/mpi when deps are
+  fixed (mpich is dorked).
+
+  17 Mar 2006; Markus Rothe <corsair@gentoo.org> hdf5-1.6.4.ebuild:
+  Added ~ppc64; bug #126527
+
+  14 Feb 2006; Donnie Berkholz <dberkholz@gentoo.org>; hdf5-1.6.4.ebuild:
+  Use virtual/mpi instead of an || for lam-mpi and mpich. It caused issues
+  with octave, reported by humpback@gentoo.org.
+
+  16 Dec 2005; Diego Pettenò <flameeyes@gentoo.org> hdf5-1.6.4.ebuild:
+  Remove --with-gnu-ld option, bug #108386.
+
+  11 Sep 2005; Steve Arnold <nerdboy@gentoo.org> hdf5-1.6.2.ebuild:
+  stable bump for sparc
+
+  18 Apr 2005; Joseph Jezak <josejx@gentoo.org> hdf5-1.6.2.ebuild:
+  Marked ppc stable.
+
+*hdf5-1.6.4 (17 Apr 2005)
+
+  17 Apr 2005; Olivier Fisette <ribosome@gentoo.org> -hdf5-1.4.5.ebuild,
+  -hdf5-1.6.0.ebuild, -hdf5-1.6.1.ebuild, +hdf5-1.6.4.ebuild:
+  Removed obsolete versions.
+
+*hdf5-1.6.4 (17 Apr 2005)
+
+  17 Apr 2005; Olivier Fisette <ribosome@gentoo.org> +hdf5-1.6.4.ebuild:
+  New version. Added MPI support.
+
+  01 Apr 2005; Aron Griffis <agriffis@gentoo.org> hdf5-1.6.2.ebuild:
+  stable on ia64
+
+  29 Dec 2004; Ciaran McCreesh <ciaranm@gentoo.org> :
+  Change encoding to UTF-8 for GLEP 31 compliance
+
+*hdf5-1.6.2 (28 Dec 2004)
+
+  28 Dec 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml,
+  +hdf5-1.4.5.ebuild, +hdf5-1.6.0.ebuild, +hdf5-1.6.1.ebuild,
+  +hdf5-1.6.2.ebuild:
+  Moved from dev-libs/hdf5 to sci-libs/hdf5.
+
+  25 Jun 2004; Danny van Dyk <kugelfang@gentoo.org> hdf5-1.6.2.ebuild:
+  Marked stable on amd64.
+
+  15 Jun 2004; Michael Sterrett <mr_bones_@gentoo.org> hdf5-1.4.5.ebuild,
+  hdf5-1.6.0.ebuild, hdf5-1.6.1.ebuild, hdf5-1.6.2.ebuild:
+  PROVIDE is for virtuals
+
+  05 May 2004; Bryan Østergaard <kloeri@gentoo.org> hdf5-1.6.2.ebuild:
+  Stable on alpha.
+
+  03 Apr 2004; Peter Bienstman <pbienst@gentoo.org> hdf5-1.6.2.ebuild:
+  Marked stable on x86.
+
+*hdf5-1.6.2 (03 Mar 2004)
+
+  3 Mar 2004; <pbienst@gentoo.org> hdf5-1.6.2.ebuild:
+  New version.
+
+  3 Mar 2004; <pbienst@gentoo.org> hdf5-1.6.1.ebuild:
+  Mark stable on x86.
+
+  18 Feb 2004; <augustus@gentoo.org> hdf5-1.6.1.ebuild:
+  Added ~amd64 to keywords.
+
+  16 Feb 2004; Aron Griffis <agriffis@gentoo.org> hdf5-1.6.1.ebuild:
+  add ~alpha and ~ia64
+
+  15 Feb 2004; Jason Wever <weeve@gentoo.org> hdf5-1.6.1.ebuild:
+  Added ~sparc keyword to fix broken dependencies of app-sci/octave.
+
+*hdf5-1.6.1 (06 jan 2004)
+
+  06 Jan 2004; George Shapovalov <george@gentoo.org> hdf5-1.6.1.ebuild :
+  new version (#35792) thanks to Peter Bienstman <Peter.Bienstman@rug.ac.be> for notification
+
+*hdf5-1.6.0 (24 Aug 2003)
+
+  24 Aug 2003; George Shapovalov <george@gentoo.org> hdf5-1.6.0.ebuild :
+  added few chenges from #21071, added ssl to IUSE
+  thanks to Donald Giuliano <guido@ou.edu> for some configure flags suggestions
+
+  24 Aug 2003; George Shapovalov <george@gentoo.org> hdf5-1.6.0.ebuild :
+  new version (#25365),
+  this one installs examples, and of course in a wrong place :), had to fix location.
+  thanks to James Cloos <cloos@jhcloos.com> for notification
+
+*hdf5-1.4.5 (19 Jun 2003)
+
+  19 Jun 2003; George Shapovalov <george@gentoo.org> hdf5-1.4.5.ebuild, Manifest, files/{digest-hdf5-1.4.5} :
+  initial release (#21071)
+  HDF5 is a general purpose library and file format for storing scientific data.
+  ebuild submitted by Castel?o <castelao@oceanologia.net> and Shaun Cloherty <s.cloherty@gsbme.unsw.edu.au>
diff --git a/sci-libs/hdf5/Manifest b/sci-libs/hdf5/Manifest
new file mode 100644
index 0000000..bdd9162
--- /dev/null
+++ b/sci-libs/hdf5/Manifest
@@ -0,0 +1,17 @@
+AUX hdf5-1.8.3-as-needed.patch 1821 SHA1 b295f26b8d39fae21201449441a8ac3c0c699048 SHA256 6f03f955186e2e2870517580bd14a637e2cf0206e7547184948653e04c464bb3
+AUX hdf5-1.8.3-includes.patch 398 SHA1 339137d04a803e25a0cafaa4f4d167a4cbc9a7ae SHA256 cd82d8b3817d83d59054a2a32ce44aca060157095875f6e91c560ab830b32561
+AUX hdf5-1.8.3-noreturn.patch 3222 SHA1 c5d8f7528fbe5c0bde0cb0ac5c1dd189559ac140 SHA256 d902cfbda0382b8998506ea765d0795937485c44d8824051275ad668bcbd6565
+AUX hdf5-1.8.4-gnutools.patch 4607 SHA1 8aa01c68f788bfedb490dafd0252970105810eac SHA256 d4f989f289e7fb3ee8e585b10232811c17588b730013698fc439cc0fdabcb252
+AUX hdf5-1.8.4-scaleoffset.patch 1098 SHA1 29be6d6cb7de5db5e10429879f9d6673b6af1519 SHA256 596568d5cf56eba73de4e88a3e7aa0c8c13f3660279ffda783e2074e846a9b2d
+AUX hdf5-1.8.4-sigbus.patch 779 SHA1 3fc4c90ac42b9a59f26a459e6faf6f7410b87a9a SHA256 69c0ef464d99b6c2bd3a959b8210e7772a662054b481bed7775ec21c731bf106
+AUX hdf5-1.8.5-implicits.patch 1782 SHA1 eda61db0fafdc738db992fc055a9ad9626743872 SHA256 cd352f026daabba1c1a17725ebbc21a59015d3103697fd6e1181ea1998c07bb3
+AUX hdf5-1.8.5-noreturn.patch 1477 SHA1 88eee2a0bb02512795a61f0ceb9d54f8df454e31 SHA256 7278c504b0e252ea5d0a9d7de5b332f0f1c0981a441efb286864b9599790c0b2
+AUX mpd.conf 48 SHA1 244eee76dbf4ff269e4489d5cc7c3577c6c1fa6b SHA256 ae740cacaf2cb798921cb2092f5af98de67445e27af3f88858f3e6d2bbb127f4
+DIST hdf5-1.8.4.tar.gz 7181176 RMD160 e448e2326b55aa89ff0bd7488cd4291d6c5485ee SHA1 37877e29c49a6af3e23aa9ad798ef12b8ba1c05c SHA256 a992fce9387a17f175b3b188dc2a42f545a3057aeb141beb3fc3361c7521f465
+DIST hdf5-1.8.6.tar.bz2 5521674 RMD160 e0feec256e61e4947367a2144d9835f569035577 SHA1 348bd881c03a9568ac4ea9071833d6119c733757 SHA256 585ddb775a2aa752ebf673f972b90fb14f3732f5f1806255d101d7adc9a53004
+DIST hdf5-1.8.7.tar.bz2 5710170 RMD160 34641bf8e664c3b3382d1346a65e2f5c3eb485ee SHA1 be1daff26f066aca0b5be52d86dada6757fc4b95 SHA256 771761c9bec30b9a4137fa59ef88fdafdb0f4f35d1db0fd655f2591d19570fec
+EBUILD hdf5-1.8.4-r1.ebuild 3134 SHA1 9f01a942144e3a1cdf8d9eea9b3e3620cd180892 SHA256 89aa8ed18e2d68e4c55d8f24c0db221f6e3f13d056f4f14eb29016dffddcdda7
+EBUILD hdf5-1.8.6.ebuild 3101 SHA1 46012018d70646e025f4b19335eb77e147cc4c53 SHA256 aa9c4609c90b82561086f5cbb643fad56b4f1b84e26098c985d260e6fbf23d68
+EBUILD hdf5-1.8.7.ebuild 3014 SHA1 df19fe7c3c9b89ee4e85aa76a39087434a955025 SHA256 70b8a70cc46326ec4e1c281b4304c07b8628b197fe79d8a97553bca67d2cac69
+MISC ChangeLog 14930 SHA1 8fbe3de9fd6de412e096358132bbe0fd43b3735f SHA256 89356b57b866ba734307a911ba3fb63b0f1af7a1375b106b5214b5b8ea5c8238
+MISC metadata.xml 447 SHA1 5e9be3a88b19d1651aef3f867829c3e25f2e6a16 SHA256 1f01480c1833905629ecb1defd9fd0d12355a49929fb0277dd342d3012cec4cc
diff --git a/sci-libs/hdf5/files/hdf5-1.8.3-as-needed.patch b/sci-libs/hdf5/files/hdf5-1.8.3-as-needed.patch
new file mode 100644
index 0000000..6b1f438
--- /dev/null
+++ b/sci-libs/hdf5/files/hdf5-1.8.3-as-needed.patch
@@ -0,0 +1,41 @@
+--- fortran/src/Makefile.am.orig	2009-04-15 19:10:01.053733251 +0100
++++ fortran/src/Makefile.am	2009-04-15 19:12:49.874557795 +0100
+@@ -66,6 +66,8 @@
+          H5If.c H5Lf.c H5Of.c H5Pf.c H5Rf.c H5Sf.c H5Tf.c H5Zf.c        \
+          $(PARALLEL_COND_SRC)
+ 
++libhdf5_fortran_la_LIBADD = $(top_builddir)/src/libhdf5.la
++
+ # h5fc is generated during configure.
+ # Remove it only when distclean.
+ DISTCLEANFILES=h5fc
+--- hl/fortran/src/Makefile.am.orig	2009-04-15 19:10:01.245748616 +0100
++++ hl/fortran/src/Makefile.am	2009-04-15 19:30:56.042226227 +0100
+@@ -43,6 +43,7 @@
+ 
+ libhdf5hl_fortran_la_SOURCES=H5LTfc.c  H5IMfc.c H5IMcc.c H5TBfc.c H5LTff.f90  \
+                 H5IMff.f90 H5TBff.f90
++libhdf5hl_fortran_la_LIBADD=$(top_builddir)/hl/src/libhdf5_hl.la
+ 
+ # Fortran module files can have different extensions and different names
+ # (e.g., different capitalizations) on different platforms.  Write rules
+--- hl/c++/src/Makefile.am.orig	2009-04-15 19:10:01.249750013 +0100
++++ hl/c++/src/Makefile.am	2009-04-15 20:16:08.812068687 +0100
+@@ -35,6 +35,7 @@
+ # Source files for the library
+ # At the moment, only the H5PT Packet Table has a C++ API.
+ libhdf5_hl_cpp_la_SOURCES=H5PacketTable.cpp
++libhdf5_hl_cpp_la_LIBADD=$(top_builddir)/hl/src/libhdf5_hl.la
+ 
+ # Public headers
+ include_HEADERS=H5PacketTable.h
+--- hl/src/Makefile.am.orig	2009-05-13 17:03:11.000000000 +0200
++++ hl/src/Makefile.am	2009-09-10 19:22:57.489698969 +0200
+@@ -31,6 +31,7 @@
+ libhdf5_hl_la_LDFLAGS= -version-info $(LT_VERS_INTERFACE):$(LT_VERS_REVISION):$(LT_VERS_AGE)
+ 
+ libhdf5_hl_la_SOURCES=H5DS.c H5IM.c H5LT.c H5LTanalyze.c H5LTparse.c H5PT.c H5TB.c
++libhdf5_hl_la_LIBADD=$(top_builddir)/src/libhdf5.la
+ 
+ # Public header files (to be installed)
+ include_HEADERS=hdf5_hl.h H5IMpublic.h H5LTpublic.h H5TBpublic.h H5DSpublic.h H5PTpublic.h
diff --git a/sci-libs/hdf5/files/hdf5-1.8.3-includes.patch b/sci-libs/hdf5/files/hdf5-1.8.3-includes.patch
new file mode 100644
index 0000000..5e87f6c
--- /dev/null
+++ b/sci-libs/hdf5/files/hdf5-1.8.3-includes.patch
@@ -0,0 +1,11 @@
+--- hdf5-1.8.3.orig/src/H5E.c	2009-04-15 19:10:01.081735486 +0100
++++ hdf5-1.8.3/src/H5E.c	2009-04-15 20:02:06.708712912 +0100
+@@ -54,6 +54,8 @@
+ /***********/
+ /* Headers */
+ /***********/
++#define _GNU_SOURCE
++#include <stdio.h>
+ #include "H5private.h"		/* Generic Functions			*/
+ #include "H5Iprivate.h"		/* IDs                                  */
+ #include "H5Epkg.h"		/* Error handling		  	*/
diff --git a/sci-libs/hdf5/files/hdf5-1.8.3-noreturn.patch b/sci-libs/hdf5/files/hdf5-1.8.3-noreturn.patch
new file mode 100644
index 0000000..27b6f9b
--- /dev/null
+++ b/sci-libs/hdf5/files/hdf5-1.8.3-noreturn.patch
@@ -0,0 +1,92 @@
+diff -Nur hdf5-1.8.3.orig/c++/src/H5AbstractDs.cpp hdf5-1.8.3/c++/src/H5AbstractDs.cpp
+--- hdf5-1.8.3.orig/c++/src/H5AbstractDs.cpp	2009-04-15 19:10:01.061734089 +0100
++++ hdf5-1.8.3/c++/src/H5AbstractDs.cpp	2009-04-16 10:10:56.263885963 +0100
+@@ -85,6 +85,8 @@
+       else if (fromClass() == "Attribute")
+ 	 throw DataTypeIException("Attribute::getTypeClass", "H5Tget_class returns H5T_NO_CLASS");
+    }
++
++   return (type_class);
+ }
+ 
+ //--------------------------------------------------------------------------
+diff -Nur hdf5-1.8.3.orig/hl/src/H5LTanalyze.c hdf5-1.8.3/hl/src/H5LTanalyze.c
+--- hdf5-1.8.3.orig/hl/src/H5LTanalyze.c	2009-04-15 19:10:01.221747499 +0100
++++ hdf5-1.8.3/hl/src/H5LTanalyze.c	2009-04-16 10:10:56.267887639 +0100
+@@ -2329,7 +2329,7 @@
+    return ret;
+ }
+ 
+-int H5LTyyerror(char *msg)
++void H5LTyyerror(char *msg)
+ {
+    printf("ERROR: %s before \"%s\".\n", msg, yytext);
+ }
+diff -Nur hdf5-1.8.3.orig/hl/src/H5LTanalyze.l hdf5-1.8.3/hl/src/H5LTanalyze.l
+--- hdf5-1.8.3.orig/hl/src/H5LTanalyze.l	2009-04-15 19:10:01.221747499 +0100
++++ hdf5-1.8.3/hl/src/H5LTanalyze.l	2009-04-16 10:10:56.267887639 +0100
+@@ -181,7 +181,7 @@
+    return ret;
+ }
+ 
+-int H5LTyyerror(char *msg)
++void H5LTyyerror(char *msg)
+ {
+    printf("ERROR: %s before \"%s\".\n", msg, yytext);
+ }
+diff -Nur hdf5-1.8.3.orig/hl/src/H5LTparse.c hdf5-1.8.3/hl/src/H5LTparse.c
+--- hdf5-1.8.3.orig/hl/src/H5LTparse.c	2009-04-15 19:10:01.221747499 +0100
++++ hdf5-1.8.3/hl/src/H5LTparse.c	2009-04-16 10:10:56.267887639 +0100
+@@ -64,7 +64,7 @@
+ #include<hdf5.h>
+ 
+ extern int yylex();
+-extern int yyerror(char *);
++extern void yyerror(char *);
+ 
+ #define STACK_SIZE      16
+ 
+diff -Nur hdf5-1.8.3.orig/test/dt_arith.c hdf5-1.8.3/test/dt_arith.c
+--- hdf5-1.8.3.orig/test/dt_arith.c	2009-04-15 19:10:01.121739118 +0100
++++ hdf5-1.8.3/test/dt_arith.c	2009-04-16 10:10:56.271887918 +0100
+@@ -3408,6 +3408,7 @@
+     else if(run_test==TEST_DENORM || run_test==TEST_SPECIAL)
+         return 1;
+ #endif
++    return 1;
+ }
+ 
+ 
+diff -Nur hdf5-1.8.3.orig/tools/h5dump/h5dump.c hdf5-1.8.3/tools/h5dump/h5dump.c
+--- hdf5-1.8.3.orig/tools/h5dump/h5dump.c	2009-04-15 19:10:01.141740794 +0100
++++ hdf5-1.8.3/tools/h5dump/h5dump.c	2009-04-16 10:10:56.275888757 +0100
+@@ -602,6 +602,7 @@
+  *
+  *-------------------------------------------------------------------------
+  */
++static void leave(int ret) __attribute__ ((__noreturn__));
+ static void
+ leave(int ret)
+ {
+diff -Nur hdf5-1.8.3.orig/tools/h5ls/h5ls.c hdf5-1.8.3/tools/h5ls/h5ls.c
+--- hdf5-1.8.3.orig/tools/h5ls/h5ls.c	2009-04-15 19:10:01.165741353 +0100
++++ hdf5-1.8.3/tools/h5ls/h5ls.c	2009-04-16 10:10:56.279888477 +0100
+@@ -2147,6 +2147,7 @@
+  *
+  *-------------------------------------------------------------------------
+  */
++static void leave(int ret) __attribute__ ((__noreturn__));
+ static void
+ leave(int ret)
+ {
+diff -Nur hdf5-1.8.3.orig/tools/h5stat/h5stat.c hdf5-1.8.3/tools/h5stat/h5stat.c
+--- hdf5-1.8.3.orig/tools/h5stat/h5stat.c	2009-04-15 19:10:01.181742750 +0100
++++ hdf5-1.8.3/tools/h5stat/h5stat.c	2009-04-16 10:10:56.279888477 +0100
+@@ -181,6 +181,7 @@
+     { NULL, 0, '\0' }
+ };
+ 
++static void leave(int ret) __attribute__ ((__noreturn__));
+ static void
+ leave(int ret)
+ {
diff --git a/sci-libs/hdf5/files/hdf5-1.8.4-gnutools.patch b/sci-libs/hdf5/files/hdf5-1.8.4-gnutools.patch
new file mode 100644
index 0000000..2843afb
--- /dev/null
+++ b/sci-libs/hdf5/files/hdf5-1.8.4-gnutools.patch
@@ -0,0 +1,65 @@
+--- hdf5-1.8.4.orig/src/Makefile.am	2009-11-10 22:12:02.000000000 +0100
++++ hdf5-1.8.4/src/Makefile.am	2009-12-03 13:13:36.902083292 +0100
+@@ -26,14 +26,52 @@
+ # Use -g to force no optimization since many compilers (e.g., Intel) takes
+ # a long time to compile it with any optimization on.  H5detect is used
+ # to generate H5Tinit.c once. So, optimization is not critical.
++# -O0 is required for >= gcc4.3
+ noinst_PROGRAMS = H5detect
+-H5detect_CFLAGS = -g $(AM_CFLAGS)
++H5detect_CFLAGS = -g -O0
++
++# Automake doesn't have a way to build with no optimization
++# See http://sources.redhat.com/ml/automake/2002-08/msg00082.html
++# This is the automake-produced rule with $(CFLAGS) removed
++H5detect_LINK = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \
++	--mode=link $(CCLD) $(H5detect_CFLAGS) $(AM_LDFLAGS) \
++	$(LDFLAGS) -o $@
++
++H5detect-H5detect.o: H5detect.c
++@am__fastdepCC_TRUE@	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(H5detect_CFLAGS) -MT H5detect-H5detect.o -MD -MP -MF $(DEPDIR)/H5detect-H5detect.Tpo -c -o H5detect-H5detect.o `test -f 'H5detect.c' || echo '$(srcdir)/'`H5detect.c
++@am__fastdepCC_TRUE@	mv -f $(DEPDIR)/H5detect-H5detect.Tpo $(DEPDIR)/H5detect-H5detect.Po
++@AMDEP_TRUE@@am__fastdepCC_FALSE@	source='H5detect.c' object='H5detect-H5detect.o' libtool=no @AMDEPBACKSLASH@
++@AMDEP_TRUE@@am__fastdepCC_FALSE@	DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
++@am__fastdepCC_FALSE@	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(H5detect_CFLAGS) -c -o H5detect-H5detect.o `test -f 'H5detect.c' || echo '$(srcdir)/'`H5detect.c
++
++H5detect-H5detect.obj: H5detect.c
++@am__fastdepCC_TRUE@	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(H5detect_CFLAGS) -MT H5detect-H5detect.obj -MD -MP -MF $(DEPDIR)/H5detect-H5detect.Tpo -c -o H5detect-H5detect.obj `if test -f 'H5detect.c'; then $(CYGPATH_W) 'H5detect.c'; else $(CYGPATH_W) '$(srcdir)/H5detect.c'; fi`
++@am__fastdepCC_TRUE@	mv -f $(DEPDIR)/H5detect-H5detect.Tpo $(DEPDIR)/H5detect-H5detect.Po
++@AMDEP_TRUE@@am__fastdepCC_FALSE@	source='H5detect.c' object='H5detect-H5detect.obj' libtool=no @AMDEPBACKSLASH@
++@AMDEP_TRUE@@am__fastdepCC_FALSE@	DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
++@am__fastdepCC_FALSE@	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(H5detect_CFLAGS) -c -o H5detect-H5detect.obj `if test -f 'H5detect.c'; then $(CYGPATH_W) 'H5detect.c'; else $(CYGPATH_W) '$(srcdir)/H5detect.c'; fi`
++
++noinst_LTLIBRARIES = libH5Tconv.la
++libH5Tconv_la_SOURCES = H5Tconv.c
++libH5Tconv_la_CFLAGS =  -g -O0
++libH5Tconv_la_LINK = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) \
++	$(LIBTOOLFLAGS) --mode=link $(CCLD) $(libH5Tconv_la_CFLAGS) \
++	$(AM_LDFLAGS) $(LDFLAGS) -o $@
++
++libH5Tconv_la-H5Tconv.lo: H5Tconv.c
++@am__fastdepCC_TRUE@	$(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(libH5Tconv_la_CFLAGS) -MT libH5Tconv_la-H5Tconv.lo -MD -MP -MF $(DEPDIR)/libH5Tconv_la-H5Tconv.Tpo -c -o libH5Tconv_la-H5Tconv.lo `test -f 'H5Tconv.c' || echo '$(srcdir)/'`H5Tconv.c
++@am__fastdepCC_TRUE@	mv -f $(DEPDIR)/libH5Tconv_la-H5Tconv.Tpo $(DEPDIR)/libH5Tconv_la-H5Tconv.Plo
++@AMDEP_TRUE@@am__fastdepCC_FALSE@	source='H5Tconv.c' object='libH5Tconv_la-H5Tconv.lo' libtool=yes @AMDEPBACKSLASH@
++@AMDEP_TRUE@@am__fastdepCC_FALSE@	DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
++@am__fastdepCC_FALSE@	$(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(libH5Tconv_la_CFLAGS) -c -o libH5Tconv_la-H5Tconv.lo `test -f 'H5Tconv.c' || echo '$(srcdir)/'`H5Tconv.c
++
+ 
+ # Our main target, the HDF5 library
+ lib_LTLIBRARIES=libhdf5.la
+ 
+ # Add libtool numbers to the HDF5 library (from config/lt_vers.am)
+ libhdf5_la_LDFLAGS= -version-info $(LT_VERS_INTERFACE):$(LT_VERS_REVISION):$(LT_VERS_AGE) $(AM_LDFLAGS)
++libhdf5_la_LIBADD = libH5Tconv.la
+ 
+ # H5Tinit.c is a generated file, and should be cleaned.
+ MOSTLYCLEANFILES=H5Tinit.c
+@@ -89,7 +127,7 @@
+         H5S.c H5Sall.c H5Sdbg.c H5Shyper.c H5Smpio.c H5Snone.c H5Spoint.c \
+         H5Sselect.c H5Stest.c H5SL.c H5SM.c H5SMbtree2.c \
+         H5SMcache.c H5SMtest.c H5ST.c \
+-        H5T.c H5Tarray.c H5Tbit.c H5Tcommit.c H5Tcompound.c H5Tconv.c \
++        H5T.c H5Tarray.c H5Tbit.c H5Tcommit.c H5Tcompound.c \
+         H5Tcset.c H5Tdbg.c H5Tdeprec.c H5Tenum.c H5Tfields.c \
+         H5Tfixed.c \
+         H5Tfloat.c H5Tinit.c H5Tnative.c H5Toffset.c H5Toh.c \
diff --git a/sci-libs/hdf5/files/hdf5-1.8.4-scaleoffset.patch b/sci-libs/hdf5/files/hdf5-1.8.4-scaleoffset.patch
new file mode 100644
index 0000000..be52280
--- /dev/null
+++ b/sci-libs/hdf5/files/hdf5-1.8.4-scaleoffset.patch
@@ -0,0 +1,18 @@
+--- hdf5-1.8.4.orig/test/dsets.c	2009-11-10 22:11:59.000000000 +0100
++++ hdf5-1.8.4/test/dsets.c	2009-12-03 13:13:42.239327244 +0100
+@@ -7402,10 +7402,14 @@
+         nerrors += (test_nbit_compound_3(file) < 0 		? 1 : 0);
+         nerrors += (test_scaleoffset_int(file) < 0 		? 1 : 0);
+         nerrors += (test_scaleoffset_int_2(file) < 0 	? 1 : 0);
++	/* These tests fail even if dsets is compiled with -O0, 
++	 * which is recommended solution by HDFGROUP.
++	 * Problem exists at least since version 1.4.x and occurs
++	 * on different compilers and architectures.
+         nerrors += (test_scaleoffset_float(file) < 0 	? 1 : 0);
+         nerrors += (test_scaleoffset_float_2(file) < 0 	? 1 : 0);
+         nerrors += (test_scaleoffset_double(file) < 0 	? 1 : 0);
+-        nerrors += (test_scaleoffset_double_2(file) < 0 	? 1 : 0);
++        nerrors += (test_scaleoffset_double_2(file) < 0 	? 1 : 0); */
+         nerrors += (test_multiopen (file) < 0		? 1 : 0);
+         nerrors += (test_types(file) < 0       		? 1 : 0);
+         nerrors += (test_userblock_offset(envval, my_fapl) < 0     	? 1 : 0);
diff --git a/sci-libs/hdf5/files/hdf5-1.8.4-sigbus.patch b/sci-libs/hdf5/files/hdf5-1.8.4-sigbus.patch
new file mode 100644
index 0000000..8efa69b
--- /dev/null
+++ b/sci-libs/hdf5/files/hdf5-1.8.4-sigbus.patch
@@ -0,0 +1,30 @@
+Index: hdf5-1.8.4/src/H5detect.c
+===================================================================
+--- hdf5-1.8.4.orig/src/H5detect.c	2010-01-29 12:21:36.000000000 +0100
++++ hdf5-1.8.4/src/H5detect.c	2010-01-29 12:21:52.000000000 +0100
+@@ -470,6 +470,12 @@
+ static void
+ sigsegv_handler(int UNUSED signo)
+ {
++    sigset_t set;
++
++    sigemptyset(&set);
++    sigaddset(&set,SIGSEGV);
++    sigprocmask(SIG_UNBLOCK,&set,NULL);
++    
+     signal(SIGSEGV, sigsegv_handler);
+     longjmp(jbuf_g, 1);
+ }
+@@ -495,6 +501,12 @@
+ static void
+ sigbus_handler(int UNUSED signo)
+ {
++    sigset_t set;
++
++    sigemptyset(&set);
++    sigaddset(&set,SIGBUS);
++    sigprocmask(SIG_UNBLOCK,&set,NULL);
++    
+     signal(SIGBUS, sigbus_handler);
+     longjmp(jbuf_g, 1);
+ #ifdef H5_HAVE_SIGLONGJMP
+\ No newline at end of file
diff --git a/sci-libs/hdf5/files/hdf5-1.8.5-implicits.patch b/sci-libs/hdf5/files/hdf5-1.8.5-implicits.patch
new file mode 100644
index 0000000..89a9998
--- /dev/null
+++ b/sci-libs/hdf5/files/hdf5-1.8.5-implicits.patch
@@ -0,0 +1,65 @@
+Fix implicit function declarations
+
+--- hdf5-1.8.5-patch1/tools/misc/talign.c
++++ hdf5-1.8.5-patch1/tools/misc/talign.c
+@@ -23,6 +23,7 @@
+ 
+ #include "hdf5.h"
+ #include "H5private.h"
++#include "h5tools.h"
+ 
+ const char *fname = "talign.h5";
+ const char *setname = "align";
+--- hdf5-1.8.5-patch1/tools/lib/h5tools_utils.c
++++ hdf5-1.8.5-patch1/tools/lib/h5tools_utils.c
+@@ -31,6 +31,7 @@
+ #include "h5tools_utils.h"
+ #include "H5private.h"
+ #include "h5trav.h"
++#include "h5diff.h"
+ 
+ /* global variables */
+ int   nCols = 80;
+--- hdf5-1.8.5-patch1/src/H5E.c
++++ hdf5-1.8.5-patch1/src/H5E.c
+@@ -54,6 +54,8 @@
+ /***********/
+ /* Headers */
+ /***********/
++#define _GNU_SOURCE
++#include <stdio.h>
+ #include "H5private.h"		/* Generic Functions			*/
+ #include "H5Iprivate.h"		/* IDs                                  */
+ #include "H5Epkg.h"		/* Error handling		  	*/
+--- hdf5-1.8.5-patch1/src/H5Eint.c
++++ hdf5-1.8.5-patch1/src/H5Eint.c
+@@ -37,6 +37,8 @@
+ /***********/
+ /* Headers */
+ /***********/
++#define _GNU_SOURCE
++#include <stdio.h>
+ #include "H5private.h"		/* Generic Functions			*/
+ #include "H5Epkg.h"		/* Error handling		  	*/
+ #include "H5Iprivate.h"		/* IDs                                  */
+--- hdf5-1.8.5-patch1/tools/h5copy/h5copygentest.c
++++ hdf5-1.8.5-patch1/tools/h5copy/h5copygentest.c
+@@ -20,6 +20,7 @@
+ #include "hdf5.h"
+ #include "H5private.h"
+ #include "h5tools.h"
++#include "h5tools_utils.h"
+ 
+ /* Name of tool */
+ #define PROGRAMNAME "h5copygentest"
+--- hdf5-1.8.5-patch1/tools/h5repack/testh5repack_detect_szip.c
++++ hdf5-1.8.5-patch1/tools/h5repack/testh5repack_detect_szip.c
+@@ -17,7 +17,7 @@
+ #include "h5repack.h"
+ #include "h5tools.h"
+ #include "h5test.h"
+-
++#include "h5tools_utils.h"
+ 
+ /* Name of tool */
+ #define PROGRAMNAME "h5repack_detect_szip"
diff --git a/sci-libs/hdf5/files/hdf5-1.8.5-noreturn.patch b/sci-libs/hdf5/files/hdf5-1.8.5-noreturn.patch
new file mode 100644
index 0000000..40065f7
--- /dev/null
+++ b/sci-libs/hdf5/files/hdf5-1.8.5-noreturn.patch
@@ -0,0 +1,73 @@
+--- hl/src/H5LTanalyze.c
++++ hl/src/H5LTanalyze.c
+@@ -2329,7 +2329,7 @@
+    return ret;
+ }
+ 
+-int H5LTyyerror(char *msg)
++void H5LTyyerror(char *msg)
+ {
+    printf("ERROR: %s before \"%s\".\n", msg, yytext);
+ }
+--- hl/src/H5LTanalyze.l
++++ hl/src/H5LTanalyze.l
+@@ -181,7 +181,7 @@
+    return ret;
+ }
+ 
+-int H5LTyyerror(char *msg)
++void H5LTyyerror(char *msg)
+ {
+    printf("ERROR: %s before \"%s\".\n", msg, yytext);
+ }
+--- hl/src/H5LTparse.c
++++ hl/src/H5LTparse.c
+@@ -64,7 +64,7 @@
+ #include<hdf5.h>
+ 
+ extern int yylex();
+-extern int yyerror(char *);
++extern void yyerror(char *);
+ 
+ #define STACK_SIZE      16
+ 
+--- test/dt_arith.c
++++ test/dt_arith.c
+@@ -3408,6 +3408,7 @@
+     else if(run_test==TEST_DENORM || run_test==TEST_SPECIAL)
+         return 1;
+ #endif
++    return 1;
+ }
+ 
+ 
+--- tools/h5dump/h5dump.c
++++ tools/h5dump/h5dump.c
+@@ -602,6 +602,7 @@
+  *
+  *-------------------------------------------------------------------------
+  */
++static void leave(int ret) __attribute__ ((__noreturn__));
+ static void
+ leave(int ret)
+ {
+--- tools/h5ls/h5ls.c
++++ tools/h5ls/h5ls.c
+@@ -2147,6 +2147,7 @@
+  *
+  *-------------------------------------------------------------------------
+  */
++static void leave(int ret) __attribute__ ((__noreturn__));
+ static void
+ leave(int ret)
+ {
+--- tools/h5stat/h5stat.c
++++ tools/h5stat/h5stat.c
+@@ -181,6 +181,7 @@
+     { NULL, 0, '\0' }
+ };
+ 
++static void leave(int ret) __attribute__ ((__noreturn__));
+ static void
+ leave(int ret)
+ {
diff --git a/sci-libs/hdf5/files/mpd.conf b/sci-libs/hdf5/files/mpd.conf
new file mode 100644
index 0000000..07dd982
--- /dev/null
+++ b/sci-libs/hdf5/files/mpd.conf
@@ -0,0 +1,2 @@
+secretword=test69hike
+MPD_SECRETWORD=test69hike
diff --git a/sci-libs/hdf5/hdf5-1.8.4-r1.ebuild b/sci-libs/hdf5/hdf5-1.8.4-r1.ebuild
new file mode 100644
index 0000000..b6b1b9f
--- /dev/null
+++ b/sci-libs/hdf5/hdf5-1.8.4-r1.ebuild
@@ -0,0 +1,113 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/hdf5/hdf5-1.8.4-r1.ebuild,v 1.18 2011/07/06 15:00:48 xarthisius Exp $
+
+EAPI=3
+
+inherit autotools eutils fortran-2
+
+DESCRIPTION="General purpose library and file format for storing scientific data"
+HOMEPAGE="http://www.hdfgroup.org/HDF5/"
+SRC_URI="http://www.hdfgroup.org/ftp/HDF5/prev-releases/${P}/src/${P}.tar.gz"
+
+LICENSE="NCSA-HDF"
+SLOT="0"
+KEYWORDS="alpha amd64 ia64 ppc ppc64 sparc x86"
+IUSE="cxx examples fortran mpi szip threads zlib"
+
+RDEPEND="
+	fortran? ( virtual/fortran )
+	mpi? ( || (
+			sys-cluster/openmpi[romio]
+			sys-cluster/mpich2[romio] ) )
+	szip? ( >=sci-libs/szip-2.1 )
+	zlib? ( sys-libs/zlib )"
+
+DEPEND="${RDEPEND}
+	sys-devel/libtool:2
+	sys-process/time"
+
+pkg_setup() {
+	use fortran && fortran-2_pkg_setup
+	if use mpi; then
+		if has_version 'sci-libs/hdf5[-mpi]'; then
+			ewarn "Installing hdf5 with mpi enabled with a previous hdf5 with mpi disabled may fail."
+			ewarn "Try to uninstall the current hdf5 prior to enabling mpi support."
+		fi
+		if use cxx; then
+			ewarn "Simultaneous mpi and cxx is not supported by ${PN}"
+			ewarn "Will disable cxx interface"
+		fi
+		export CC=mpicc
+		if use fortran; then
+			export FC=mpif90
+		fi
+	elif has_version 'sci-libs/hdf5[mpi]'; then
+		ewarn "Installing hdf5 with mpi disabled while having hdf5 installed with mpi enabled may fail."
+		ewarn "Try to uninstall the current hdf5 prior to disabling mpi support."
+	fi
+}
+
+src_prepare() {
+	epatch \
+		"${FILESDIR}"/${PN}-1.8.3-as-needed.patch \
+		"${FILESDIR}"/${PN}-1.8.3-includes.patch \
+		"${FILESDIR}"/${PN}-1.8.3-noreturn.patch \
+		"${FILESDIR}"/${P}-gnutools.patch \
+		"${FILESDIR}"/${P}-scaleoffset.patch \
+		"${FILESDIR}"/${P}-sigbus.patch
+
+	# respect gentoo examples directory
+	sed \
+		-e 's:$(docdir)/hdf5:$(DESTDIR)/$(docdir):' \
+		-i $(find . -name Makefile.am) || die
+	sed \
+		-e '/docdir/d' \
+		-i config/commence.am || die
+	eautoreconf
+	# enable shared libs by default for h5cc config utility
+	sed -i -e "s/SHLIB:-no/SHLIB:-yes/g" tools/misc/h5cc.in \
+		|| die "sed h5cc.in failed"
+}
+
+src_configure() {
+	# threadsafe incompatible with many options
+	local myconf="--disable-threadsafe"
+	use threads && ! use fortran && ! use cxx && ! use mpi \
+		&& myconf="--enable-threadsafe"
+
+	if use mpi; then
+		myconf="${myconf} --disable-cxx"
+	else
+	# workaround for bug 285148
+		if use cxx; then
+			myconf="${myconf} $(use_enable cxx) CXX=$(tc-getCXX)"
+		fi
+		if use fortran; then
+			myconf="${myconf} FC=$(tc-getFC)"
+		fi
+	fi
+
+	econf \
+		--disable-sharedlib-rpath \
+		--enable-production \
+		--enable-strict-format-checks \
+		--docdir=/usr/share/doc/${PF} \
+		--enable-deprecated-symbols \
+		--enable-shared \
+		$(use_enable fortran) \
+		$(use_enable mpi parallel) \
+		$(use_with szip szlib) \
+		$(use_with threads pthread) \
+		$(use_with zlib) \
+		${myconf}
+}
+
+src_install() {
+	emake DESTDIR="${D}" install || die "emake install failed"
+	dodoc README.txt
+	if use examples; then
+		emake DESTDIR="${D}" install-examples \
+			|| die "emake install examples failed"
+	fi
+}
diff --git a/sci-libs/hdf5/hdf5-1.8.6.ebuild b/sci-libs/hdf5/hdf5-1.8.6.ebuild
new file mode 100644
index 0000000..9851225
--- /dev/null
+++ b/sci-libs/hdf5/hdf5-1.8.6.ebuild
@@ -0,0 +1,110 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/hdf5/hdf5-1.8.6.ebuild,v 1.7 2011/07/06 15:00:48 xarthisius Exp $
+
+EAPI=3
+
+inherit autotools eutils fortran-2
+
+DESCRIPTION="General purpose library and file format for storing scientific data"
+HOMEPAGE="http://www.hdfgroup.org/HDF5/"
+SRC_URI="http://www.hdfgroup.org/ftp/HDF5/current/src/${P}.tar.bz2"
+
+LICENSE="NCSA-HDF"
+SLOT="0"
+KEYWORDS="~alpha ~amd64 ~ia64 ~ppc ~ppc64 ~sparc ~x86"
+IUSE="cxx debug examples fortran mpi szip threads zlib"
+
+RDEPEND="
+	fortran? ( virtual/fortran )
+	mpi? ( virtual/mpi[romio] )
+	szip? ( >=sci-libs/szip-2.1 )
+	zlib? ( sys-libs/zlib )"
+
+DEPEND="${RDEPEND}
+	sys-devel/libtool:2
+	sys-process/time"
+
+pkg_setup() {
+	use fortran && fortran-2_pkg_setup
+	if use mpi; then
+		if has_version 'sci-libs/hdf5[-mpi]'; then
+			ewarn "Installing hdf5 with mpi enabled with a previous hdf5 with mpi disabled may fail."
+			ewarn "Try to uninstall the current hdf5 prior to enabling mpi support."
+		fi
+		if use cxx; then
+			ewarn "Simultaneous mpi and cxx is not supported by ${PN}"
+			ewarn "Will disable cxx interface"
+		fi
+		export CC=mpicc
+		if use fortran; then
+			export FC=mpif90
+		fi
+	elif has_version 'sci-libs/hdf5[mpi]'; then
+		ewarn "Installing hdf5 with mpi disabled while having hdf5 installed with mpi enabled may fail."
+		ewarn "Try to uninstall the current hdf5 prior to disabling mpi support."
+	fi
+}
+
+src_prepare() {
+	epatch \
+		"${FILESDIR}"/${PN}-1.8.3-as-needed.patch \
+		"${FILESDIR}"/${PN}-1.8.5-implicits.patch \
+		"${FILESDIR}"/${PN}-1.8.5-noreturn.patch \
+		"${FILESDIR}"/${PN}-1.8.4-scaleoffset.patch \
+
+	# respect gentoo examples directory
+	sed \
+		-e "s:hdf5_examples:doc/${PF}/examples:g" \
+		-i $(find . -name Makefile.am) $(find . -name "run*.sh.in") || die
+	sed \
+		-e '/docdir/d' \
+		-i config/commence.am || die
+	eautoreconf
+	# enable shared libs by default for h5cc config utility
+	sed -i -e "s/SHLIB:-no/SHLIB:-yes/g" tools/misc/h5cc.in \
+		|| die "sed h5cc.in failed"
+}
+
+src_configure() {
+	# threadsafe incompatible with many options
+	local myconf="--disable-threadsafe"
+	use debug && myconf="${myconf} --enable-codestack"
+	use threads && ! use fortran && ! use cxx && ! use mpi \
+		&& myconf="--enable-threadsafe"
+
+	if use mpi; then
+		myconf="${myconf} --disable-cxx"
+	else
+	# workaround for bug 285148
+		if use cxx; then
+			myconf="${myconf} $(use_enable cxx) CXX=$(tc-getCXX)"
+		fi
+		if use fortran; then
+			myconf="${myconf} FC=$(tc-getFC)"
+		fi
+	fi
+
+	econf \
+		--disable-sharedlib-rpath \
+		--enable-production \
+		--docdir=/usr/share/doc/${PF} \
+		--enable-deprecated-symbols \
+		--enable-shared \
+		$(use_enable debug debug all) \
+		$(use_enable fortran) \
+		$(use_enable mpi parallel) \
+		$(use_with szip szlib) \
+		$(use_with threads pthread) \
+		$(use_with zlib) \
+		${myconf}
+}
+
+src_install() {
+	emake DESTDIR="${D}" install || die "emake install failed"
+	dodoc README.txt
+	if use examples; then
+		emake DESTDIR="${D}" install-examples \
+			|| die "emake install examples failed"
+	fi
+}
diff --git a/sci-libs/hdf5/hdf5-1.8.7.ebuild b/sci-libs/hdf5/hdf5-1.8.7.ebuild
new file mode 100644
index 0000000..ec759a6
--- /dev/null
+++ b/sci-libs/hdf5/hdf5-1.8.7.ebuild
@@ -0,0 +1,107 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/hdf5/hdf5-1.8.7.ebuild,v 1.8 2011/07/08 11:24:29 xarthisius Exp $
+
+EAPI=4
+
+inherit autotools eutils fortran-2
+
+DESCRIPTION="General purpose library and file format for storing scientific data"
+HOMEPAGE="http://www.hdfgroup.org/HDF5/"
+SRC_URI="http://www.hdfgroup.org/ftp/HDF5/current/src/${P}.tar.bz2"
+
+LICENSE="NCSA-HDF"
+SLOT="0"
+KEYWORDS="~alpha ~amd64 ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux"
+IUSE="cxx debug examples fortran mpi szip threads zlib"
+
+RDEPEND="
+	fortran? ( virtual/fortran )
+	mpi? ( virtual/mpi[romio] )
+	szip? ( >=sci-libs/szip-2.1 )
+	zlib? ( sys-libs/zlib )"
+
+DEPEND="${RDEPEND}
+	sys-devel/libtool:2
+	sys-process/time"
+
+pkg_setup() {
+	use fortran && fortran-2_pkg_setup
+	if use mpi; then
+		if has_version 'sci-libs/hdf5[-mpi]'; then
+			ewarn "Installing hdf5 with mpi enabled with a previous hdf5 with mpi disabled may fail."
+			ewarn "Try to uninstall the current hdf5 prior to enabling mpi support."
+		fi
+		if use cxx; then
+			ewarn "Simultaneous mpi and cxx is not supported by ${PN}"
+			ewarn "Will disable cxx interface"
+		fi
+		export CC=mpicc
+		use fortran && export FC=mpif90
+	elif has_version 'sci-libs/hdf5[mpi]'; then
+		ewarn "Installing hdf5 with mpi disabled while having hdf5 installed with mpi enabled may fail."
+		ewarn "Try to uninstall the current hdf5 prior to disabling mpi support."
+	fi
+}
+
+src_prepare() {
+	epatch \
+		"${FILESDIR}"/${PN}-1.8.3-as-needed.patch \
+		"${FILESDIR}"/${PN}-1.8.5-implicits.patch \
+		"${FILESDIR}"/${PN}-1.8.5-noreturn.patch \
+		"${FILESDIR}"/${PN}-1.8.4-scaleoffset.patch \
+
+	# respect gentoo examples directory
+	sed \
+		-e "s:hdf5_examples:doc/${PF}/examples:g" \
+		-i $(find . -name Makefile.am) $(find . -name "run*.sh.in") || die
+	sed \
+		-e '/docdir/d' \
+		-i config/commence.am || die
+	eautoreconf
+	# enable shared libs by default for h5cc config utility
+	sed -i -e "s/SHLIB:-no/SHLIB:-yes/g" tools/misc/h5cc.in \
+		|| die "sed h5cc.in failed"
+}
+
+src_configure() {
+	# threadsafe incompatible with many options
+	local myconf="--disable-threadsafe"
+	use debug && myconf="${myconf} --enable-codestack"
+	use threads && ! use fortran && ! use cxx && ! use mpi \
+		&& myconf="--enable-threadsafe"
+
+	if use mpi; then
+		myconf="${myconf} --disable-cxx"
+	else
+	# workaround for bug 285148
+		if use cxx; then
+			myconf="${myconf} $(use_enable cxx) CXX=$(tc-getCXX)"
+		fi
+		if use fortran; then
+			myconf="${myconf} FC=$(tc-getFC)"
+		fi
+	fi
+
+	econf \
+		--disable-sharedlib-rpath \
+		--enable-production \
+		--docdir=/usr/share/doc/${PF} \
+		--enable-deprecated-symbols \
+		--enable-shared \
+		--disable-silent-rules \
+		$(use_enable debug debug all) \
+		$(use_enable fortran) \
+		$(use_enable mpi parallel) \
+		$(use_with szip szlib) \
+		$(use_with threads pthread) \
+		$(use_with zlib) \
+		${myconf}
+}
+
+src_install() {
+	default
+	if use examples; then
+		emake DESTDIR="${D}" install-examples
+	fi
+}
diff --git a/sci-libs/hdf5/metadata.xml b/sci-libs/hdf5/metadata.xml
new file mode 100644
index 0000000..2058812
--- /dev/null
+++ b/sci-libs/hdf5/metadata.xml
@@ -0,0 +1,11 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<herd>sci</herd>
+	<longdescription>
+  HDF5 is a file format and library for storing scientific data. HDF5
+  was designed and implemented to address the deficiencies of HDF4.x. It
+  has a more powerful and flexible data model, supports files larger
+  than 2 GB, and supports parallel I/O.
+</longdescription>
+</pkgmetadata>
diff --git a/sci-libs/igraph/Manifest b/sci-libs/igraph/Manifest
new file mode 100644
index 0000000..ada4e00
--- /dev/null
+++ b/sci-libs/igraph/Manifest
@@ -0,0 +1,2 @@
+DIST igraph-0.5.4.tar.gz 1741540 SHA1 e5f1a54ac1a9567127ebee838720b3ec38ad534a SHA256 0c7256849d4f63b12b240aedd4fc5be34a2888cce7dd7b4d91c02315585a063f
+EBUILD igraph-0.5.4.ebuild 964 SHA1 928745f3d265cecb28e071120b0d8e45be3b718b SHA256 de9fd3656e43724d26bed2b8dde27b8c1182896f7803fae7cbb7d6229d73cac2
diff --git a/sci-libs/igraph/igraph-0.5.4.ebuild b/sci-libs/igraph/igraph-0.5.4.ebuild
new file mode 100644
index 0000000..cc44899
--- /dev/null
+++ b/sci-libs/igraph/igraph-0.5.4.ebuild
@@ -0,0 +1,38 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=3
+
+DESCRIPTION="Library for creating and manipulating (un)directed graphs."
+HOMEPAGE="http://igraph.sourceforge.net/"
+SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz"
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~amd64-linux"
+IUSE="+arpack +blas debug +gmp +graphml +lapack profile shell"
+
+DEPEND="sys-devel/libtool
+	graphml? ( dev-libs/libxml2 )
+	gmp? ( dev-libs/gmp )
+	blas? ( virtual/blas )
+	lapack? ( virtual/lapack )
+	arpack? ( sci-libs/arpack )"
+RDEPEND="${DEPEND}"
+
+src_configure() {
+	econf \
+		$(use_enable graphml) \
+		$(use_enable gmp) \
+		$(use_enable shell) \
+		$(use_enable profile profiling) \
+		$(use_enable debug) \
+		$(use_with blas external-blas) \
+		$(use_with lapack external-lapack) \
+		$(use_with arpack external-arpack) \
+		|| die "configure failed"
+}
+
+src_install() {
+	emake DESTDIR="${D}" install || die "install failed"
+}
diff --git a/sci-libs/vtk/ChangeLog b/sci-libs/vtk/ChangeLog
new file mode 100644
index 0000000..c790a6d
--- /dev/null
+++ b/sci-libs/vtk/ChangeLog
@@ -0,0 +1,342 @@
+# ChangeLog for sci-libs/vtk
+# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/vtk/ChangeLog,v 1.80 2010/11/09 07:57:14 xarthisius Exp $
+
+  09 Nov 2010; Kacper Kowalik <xarthisius@gentoo.org> +vtk-5.4.2-r1.ebuild,
+  +files/vtk-5.4.2-boost-property_map.patch, +files/vtk-5.4.2-cg-path.patch,
+  +files/vtk-5.4.2-libpng14.patch:
+  Bring back vtk-5.4.x as sci-visualization/mayavi:1 depends on it.
+  media-libs/jpeg -> virtual/jpeg
+
+  08 Nov 2010; Kacper Kowalik <xarthisius@gentoo.org>
+  -files/vtk-5.0.3-mpi.patch, -files/vtk-5.0.4-gcc4.3.patch,
+  -vtk-5.4.2-r1.ebuild, -files/vtk-5.4.2-boost-property_map.patch,
+  -files/vtk-5.4.2-cg-path.patch, -files/vtk-5.4.2-libpng14.patch,
+  vtk-5.6.0-r2.ebuild:
+  media-libs/jpeg -> virtual/jpeg. Drop old.
+
+  24 Jul 2010; Justin Lecher <jlec@gentoo.org> vtk-5.6.0-r2.ebuild:
+  Fix for compilation with USE=ffmpeg, #327517
+
+  11 Jul 2010; Justin Lecher <jlec@gentoo.org> vtk-5.6.0-r2.ebuild,
+  +files/vtk-5.6.0-odbc.patch:
+  Imported support for dbs from sci overlay, 327601, thanks yFrancois Bissey
+
+  17 Jun 2010; Justin Bronder <jsbronder@gentoo.org> vtk-5.4.2-r1.ebuild:
+  Remove sys-cluster/lam-mpi handling, see #324415.
+
+  09 Jun 2010; Justin Lecher <jlec@gentoo.org> -vtk-5.4.2.ebuild:
+  removed old version which having problems with PYTHON ABIs stuff
+
+  07 Jun 2010; Justin Lecher <jlec@gentoo.org> vtk-5.6.0-r2.ebuild:
+  Fixed ogg -> theora USE transition
+
+  31 May 2010; Justin Lecher <jlec@gentoo.org> metadata.xml:
+  Added myself as maintainer
+
+*vtk-5.6.0-r2 (29 May 2010)
+
+  29 May 2010; Justin Lecher <jlec@gentoo.org> -vtk-5.6.0-r1.ebuild,
+  +vtk-5.6.0-r2.ebuild:
+  Don't use bundled libtheora, moved USE ogg -> theora
+
+  29 May 2010; Justin Lecher <jlec@gentoo.org> vtk-5.6.0-r1.ebuild:
+  Added missing DEPS
+
+  29 May 2010; Justin Lecher <jlec@gentoo.org> vtk-5.6.0-r1.ebuild:
+  Corrected version of cmake in DEPEND for mpi
+
+*vtk-5.6.0-r1 (28 May 2010)
+
+  28 May 2010; Justin Lecher <jlec@gentoo.org> vtk-5.4.2.ebuild,
+  files/vtk-5.4.2-boost-property_map.patch, -vtk-5.6.0.ebuild,
+  +vtk-5.6.0-r1.ebuild, +files/vtk-5.6.0-R.patch,
+  files/vtk-5.6.0-boost-property_map.patch:
+  Fixed correct detection R libs
+
+*vtk-5.6.0 (28 May 2010)
+
+  28 May 2010; Justin Lecher <jlec@gentoo.org> vtk-5.4.2-r1.ebuild,
+  +vtk-5.6.0.ebuild, +files/vtk-5.6.0-boost-property_map.patch,
+  +files/vtk-5.6.0-cg-path.patch, +files/vtk-5.6.0-libpng14.patch:
+  Version Bump #321505; Added support for ogg R; prelimary support for
+  PREFIX
+
+  22 May 2010; Justin Lecher <jlec@gentoo.org> vtk-5.4.2.ebuild,
+  vtk-5.4.2-r1.ebuild:
+  Add x11-libs/qt-sql to deps, #301684
+
+  25 Apr 2010; Justin Lecher <jlec@gentoo.org> vtk-5.4.2-r1.ebuild:
+  Python ABI fixes, #316229
+
+  26 Mar 2010; Ben de Groot <yngwin@gentoo.org> vtk-5.4.2.ebuild,
+  vtk-5.4.2-r1.ebuild:
+  Don't inherit unused qt3 eclass (bug #310669)
+
+  11 Mar 2010; Samuli Suominen <ssuominen@gentoo.org> vtk-5.4.2-r1.ebuild,
+  +files/vtk-5.4.2-libpng14.patch:
+  Fix building with libpng14.
+
+  11 Feb 2010; Justin Lecher <jlec@gentoo.org> vtk-5.4.2.ebuild,
+  vtk-5.4.2-r1.ebuild:
+  Removed qt3 support as it is no longer in the tree
+
+  21 Jan 2010; Markus Dittrich <markusle@gentoo.org> vtk-5.4.2-r1.ebuild,
+  +files/vtk-5.4.2-boost-property_map.patch:
+  Added patch to allow compilation against boost-1.42 (fixes #301684).
+
+  16 Jan 2010; Markus Dittrich <markusle@gentoo.org> vtk-5.4.2-r1.ebuild:
+  Updated handling of mycmakeargs from cmake-utils.eclass.
+
+*vtk-5.4.2-r1 (19 Dec 2009)
+
+  19 Dec 2009; Markus Dittrich <markusle@gentoo.org> +vtk-5.4.2-r1.ebuild:
+  New revision uses cmake-utils eclass and is significantly cleaned up.
+  This should have also fixed bugs #295053 and #287591.
+  Thanks much to Francois Bissey <f.r.bissey@massey.ac.nz> for his help.
+
+  17 Dec 2009; Markus Dittrich <markusle@gentoo.org> vtk-5.4.2.ebuild:
+  Updated dependency on cmake to >=2.6 (fixes bug #295531).
+
+  04 Dec 2009; Markus Dittrich <markusle@gentoo.org> vtk-5.4.2.ebuild:
+  Added short notice regarding possible parallel make issues per bug
+  #244896.
+
+  24 Nov 2009; Markus Dittrich <markusle@gentoo.org> vtk-5.4.2.ebuild:
+  Removed boost from RDEPEND (fixes bug #293083).
+
+  18 Sep 2009; Petteri Räty <betelgeuse@gentoo.org> -vtk-5.0.4.ebuild,
+  -vtk-5.2.0-r1.ebuild:
+  Remove old versions using built_with_use.
+
+  01 Sep 2009; Markus Dittrich <markusle@gentoo.org> vtk-5.4.2.ebuild:
+  Added missing dependency on qt-opengl (fixes bug #283181).
+
+*vtk-5.4.2 (17 Jul 2009)
+
+  17 Jul 2009; Markus Dittrich <markusle@gentoo.org> -vtk-5.0.3.ebuild,
+  +files/vtk-5.4.2-cg-path.patch, +vtk-5.4.2.ebuild:
+  Version bump (fixes bug #269040). Also removed old version.
+
+  27 Oct 2008; Markus Dittrich <markusle@gentoo.org> vtk-5.2.0-r1.ebuild:
+  Attempt to fix sandbox violations (see bug #244378).
+
+*vtk-5.2.0-r1 (05 Oct 2008)
+
+  05 Oct 2008; Markus Dittrich <markusle@gentoo.org> 
+  +files/vtk-5.2.0-tcl-install.patch, -vtk-5.2.0.ebuild,
+  +vtk-5.2.0-r1.ebuild:
+  Fixed improper install location of support files (see bug #239553).
+
+*vtk-5.2.0 (01 Oct 2008)
+
+  01 Oct 2008; Markus Dittrich <markusle@gentoo.org> +vtk-5.2.0.ebuild:
+  Version bump (fixes bug #238883). Thanks much to Steve Yin
+  <steve@chinavfx.net> for his ebuild.
+
+  07 Aug 2008; Ulrich Mueller <ulm@gentoo.org> metadata.xml:
+  Add USE flag description to metadata wrt GLEP 56.
+
+  28 Jul 2008; Carsten Lohrke <carlo@gentoo.org> vtk-5.0.3.ebuild:
+  QA: Get rid of deprecated qt?_min_version().
+
+  27 Jul 2008; Carsten Lohrke <carlo@gentoo.org> vtk-5.0.4.ebuild:
+  Fix broken split Qt 4.4 dependencies, cf. bug 217161 comment 11.
+
+  08 Jul 2008; Thomas Anderson <gentoofan23@gentoo.org> vtk-5.0.4.ebuild:
+  Add a qt-gui dependency, it really is needed.
+
+  03 Jul 2008; Thomas Anderson <gentoofan23@gentoo.org> vtk-5.0.4.ebuild:
+  Migrate Dependencies to permit Split QT 4.4 to satisfy dependencies, bug
+  #217189
+
+  24 May 2008; Markus Dittrich <markusle@gentoo.org>
+  +files/vtk-5.0.4-gcc4.3.patch, vtk-5.0.4.ebuild:
+  Added gcc-4.3 compatibility patch (see bug #223383). Thanks much to 
+  Bert Karwatzki <spasswolf@web.de> for his patch.
+
+  09 Mar 2008; Markus Dittrich <markusle@gentoo.org> vtk-5.0.4.ebuild:
+  Backported support for tcl/tk-8.5 from cvs head (fixes bug 212700). 
+  Thanks much to Pacho Ramos <pacho@condmat1.ciencias.uniovi.es> for 
+  his patch.
+
+*vtk-5.0.4 (06 Mar 2008)
+
+  06 Mar 2008; Markus Dittrich <markusle@gentoo.org> +vtk-5.0.4.ebuild:
+  Version bump.
+
+  29 Feb 2008; Markus Dittrich <markusle@gentoo.org> vtk-5.0.3.ebuild:
+  Fixed bogus install location (see bug #211819). Thanks much to
+  Matthias Langer <mlangc@gmx.at> for his patch.
+
+  21 Feb 2008; Markus Dittrich <markusle@gentoo.org>
+  -files/vtk-5.0.1-python2.5-gentoo.patch, -files/vtk-5.0.3-lammpi.patch,
+  +files/vtk-5.0.3-mpi.patch, vtk-5.0.3.ebuild:
+  Removed support for mpich and added support for mpich2, openmpi, and
+  lam-mpi. Also fixed some QA issues and added qt4 eclass.
+
+  19 Aug 2007; Markus Dittrich <markusle@gentoo.org> vtk-5.0.3.ebuild:
+  Fixed incomplete RDEPEND.
+
+  01 Aug 2007; Markus Dittrich <markusle@gentoo.org> vtk-5.0.3.ebuild:
+  Added LGPL-2 to LICENSE since it is needed for gl2ps (see bug 146019).
+
+  22 Jul 2007; Donnie Berkholz <dberkholz@gentoo.org>; vtk-5.0.3.ebuild:
+  Drop virtual/x11 references.
+
+  11 Jun 2007; Petteri Räty <betelgeuse@gentoo.org> -vtk-5.0.2.ebuild:
+  Remove old version.
+
+  11 Jun 2007; Petteri Räty <betelgeuse@gentoo.org> vtk-5.0.3.ebuild:
+  Add java? ( >=virtual/jre-1.5 ) to RDEPEND.
+
+  28 May 2007; Markus Dittrich <markusle@gentoo.org> vtk-5.0.3.ebuild:
+  Added VTKHOME as exported environmental variable.
+
+  08 May 2007; Markus Dittrich <markusle@gentoo.org> vtk-5.0.3.ebuild:
+  Re-added compile flag for javac needed on amd64 (see bug #177506).
+
+  06 May 2007; Markus Dittrich <markusle@gentoo.org>
+  +files/vtk-5.0.3-lammpi.patch, vtk-5.0.3.ebuild:
+  Added patch fixing cmake files to properly detect and add lam-mpi
+  libraries.
+
+  04 May 2007; Markus Dittrich <markusle@gentoo.org> vtk-5.0.3.ebuild:
+  Check for qt3support useflag when building the examples under qt4
+  (see bug #176847).
+
+  01 May 2007; Markus Dittrich <markusle@gentoo.org> metadata.xml,
+  vtk-5.0.3.ebuild:
+  Removed explicit java CLASSPATH and added the friendly java folks
+  to metadata (see bug #176547).
+
+*vtk-5.0.3 (23 Apr 2007)
+
+  23 Apr 2007; Markus Dittrich <markusle@gentoo.org>
+  -files/vtk-qt-gentoo.patch, -vtk-5.0.0.ebuild, -vtk-5.0.1.ebuild,
+  +vtk-5.0.3.ebuild:
+  Version bump and removed old versions. Thanks much to Sebastien 
+  Fabbro <bicatali@gentoo.org> for his ebuild.
+
+  16 Apr 2007; Christian Faulhammer <opfer@gentoo.org> vtk-5.0.0.ebuild:
+  moved from USE tcltk to tk, see bug 17808
+
+*vtk-5.0.2 (02 Dec 2006)
+
+  02 Dec 2006; Markus Dittrich <markusle@gentoo.org> +vtk-5.0.2.ebuild:
+  Version bump.
+
+  18 Nov 2006; Markus Dittrich <markusle@gentoo.org> vtk-5.0.1.ebuild:
+  Added -j1 back to ebuild since some people still experience problems
+  with parallel builds (see discussion on bug #146767).
+
+  14 Oct 2006; Joshua Nichols <nichoj@gentoo.org> vtk-5.0.0.ebuild:
+  Added call to java-pkg_pkg_setup, for bug #142708
+
+  23 Sep 2006; Markus Dittrich <markusle@gentoo.org>
+  +files/vtk-5.0.1-python2.5-gentoo.patch, vtk-5.0.1.ebuild:
+  Added patch to fix compile problems with python-2.5 
+  (see bug #148727).
+
+  08 Sep 2006; Markus Dittrich <markusle@gentoo.org>
+  +files/vtk-qt-gentoo.patch, -files/vtk-qt3-qt4-gentoo.patch,
+  vtk-5.0.0.ebuild, vtk-5.0.1.ebuild:
+  Renamed the qt patch in an effort to get rid of the executable
+  permissions. Also cleaned up the ebuilds some.
+
+  08 Sep 2006; Markus Dittrich <markusle@gentoo.org>
+  files/vtk-qt3-qt4-gentoo.patch, -files/vtk-4.2.6-gcc34.patch,
+  -vtk-4.2.6.ebuild:
+  Removed old version since it doesn't build any more. Also fixed
+  permissions for the vtk-qt patch (see bug #146826).
+
+  20 Jul 2006; Markus Dittrich <markusle@gentoo.org> vtk-5.0.1.ebuild:
+  Moved to new java system. Removed -j1 from emake since it works 
+  fine here with -j2.
+
+*vtk-5.0.1 (09 Jul 2006)
+
+  09 Jul 2006; Markus Dittrich <markusle@gentoo.org> vtk-4.2.6.ebuild,
+  vtk-5.0.0.ebuild, +vtk-5.0.1.ebuild:
+  Version bump. Also, split tcltk USE flag into tcl and tk and moved
+  to new style virtual/jdk.
+
+  23 Jun 2006; Markus Dittrich <markusle@gentoo.org> vtk-5.0.0.ebuild:
+  Added a warning to the ebuild that qt4 is the default in case both 
+  qt3 and qt4 are selected as use flags (see bug #137658).
+
+  11 Jun 2006; Markus Dittrich <markusle@gentoo.org> vtk-5.0.0.ebuild:
+  Fix RDEPEND and cmake configuration such that tcl/tk is only 
+  pulled in and used if USE=tcltk. This closes bug #136324.
+
+  27 Apr 2006; Alec Warner <antarus@gentoo.org> Manifest:
+  Fixing SHA256 digest, pass four
+
+  21 Apr 2006; Markus Dittrich <markusle@gentoo.org> vtk-5.0.0.ebuild:
+  Depend on cmake-2.2.x to be able to properly compile against QT4.
+  This fixes bug #130471.
+
+  07 Apr 2006; Markus Dittrich <markusle@gentoo.org> ChangeLog:
+  Removed from package.mask after testing.
+
+  27 Mar 2006; Markus Dittrich <markusle@gentoo.org> vtk-5.0.0.ebuild:
+  Added proper JAVA_AWT_LIBRARY cmake variable for amd64 platform.
+  Thanks to Sebastiaan <s.breedveld@erasmusmc.nl> for pointing this
+  out (c.f. bug #123178).
+
+  26 Mar 2006; Markus Dittrich <markusle@gentoo.org>
+  +files/vtk-qt3-qt4-gentoo.patch, vtk-5.0.0.ebuild:
+  Added a small fix for java compilation on amd64 as detailed
+  in bug #123178. Thanks to Sebastiaan <s.breedveld@erasmusmc.nl> for 
+  the fix. Also enabled compilation of vtk against either QT3 or QT4.
+
+  06 Mar 2006; Markus Dittrich <markusle@gentoo.org> vtk-5.0.0.ebuild:
+  Fixed some QT3 issues and forced -j1 during emake. Thanks
+  much to Sebastiaan <s.breedveld@erasmusmc.nl> for his fixes
+  and testing.
+
+*vtk-5.0.0 (05 Mar 2006)
+
+  05 Mar 2006; Markus Dittrich <markusle@gentoo.org> +vtk-5.0.0.ebuild:
+  Version bump. Many thanks to Toon Verstraelen 
+  <Toon.Verstraelen@UGent.be> and Sebastiaan 
+  <s.breedveld@erasmusmc.nl> for their ebuilds and patches.
+  This fixes bug #123178.
+
+  26 Feb 2006; Markus Dittrich <markusle@gentoo.org> vtk-4.2.6.ebuild:
+  Added cmake command line flag to prevent insecure RUNPATHS 
+  (c.f. bug #122875).
+
+  22 Jan 2006; Markus Dittrich <markusle@gentoo.org> vtk-4.2.6.ebuild:
+  Fix dependencies for modular X and replace instances of lib with
+  $(get_libdir).
+
+  17 Jan 2006; Markus Dittrich <markusle@gentoo.org> metadata.xml:
+  Changed maintainer to Markus Dittrich <markusle@gentoo.org>.
+
+  19 Dec 2005; Markus Dittrich <markusle@gentoo.org> vtk-4.2.6.ebuild:
+  Use python eclass functions to determine installed python version.
+
+  18 Dec 2005; Markus Dittrich <markusle@gentoo.org> vtk-4.2.6.ebuild:
+  Fixed compilation problems when using cmake-2.2.x and when compiling against
+  python 2.4.x. Also corrected installation path of vtk jar file. This fixes
+  bugs #112119, #103343, #113597.
+
+  08 Oct 2005; Thomas Matthijs <axxo@gentoo.org> vtk-4.2.6.ebuild:
+  use java-pkg_dojar not dojar
+
+  24 Aug 2005; Patrick Kursawe <phosphan@gentoo.org> vtk-4.2.6.ebuild:
+  No longer using cp -a (bug #103487)
+
+  20 Aug 2005; Olivier Fisette <ribosome@gentoo.org> vtk-4.2.6.ebuild:
+  Removed unused "data" USE flag (fixes bug #100418).
+
+  03 Jun 2005; Patrick Dawson <pkdawson@gentoo.org> vtk-4.2.6.ebuild:
+  Typo fix.
+
+*vtk-4.2.6 (10 May 2005)
+
+  10 May 2005; Patrick Dawson <pkdawson@gentoo.org>
+  +files/vtk-4.2.6-gcc34.patch, +vtk-4.2.6.ebuild:
+  Initial import. See bug #25335.
+
diff --git a/sci-libs/vtk/Manifest b/sci-libs/vtk/Manifest
new file mode 100644
index 0000000..6d49827
--- /dev/null
+++ b/sci-libs/vtk/Manifest
@@ -0,0 +1,20 @@
+AUX vtk-5.2.0-tcl-install.patch 580 SHA1 94269da0a6d83312d0fc00c3f7adf964531a7d20 SHA256 7373a02d9408f59546486b50efb8934fc2fa14067928e27bd46b2691b80d2fc6
+AUX vtk-5.4.2-boost-property_map.patch 7739 SHA1 f38f98e9e28a51bb0553b5792cdde39a2c319b3d SHA256 5cbedc7afde2a3515a0bf580927c6a3a0d5b10efa39e649610b0f00a881a4119
+AUX vtk-5.4.2-cg-path.patch 1112 SHA1 903cd304bda40b64825ca0e806cd4d7c738f7165 SHA256 4097db18c46e1e27b6213ef7c82af07144b5a88ac19bdcf645ad7e8264cc9e10
+AUX vtk-5.4.2-libpng14.patch 548 SHA1 0da1e3168daffd3be3154102d8728135a596f707 SHA256 0aa999ba22804a9c3fe13488c0a014d45acf2a958d9a7336d38ae84e96addbda
+AUX vtk-5.6.0-R.patch 2463 SHA1 c08a10926064536f06e405b57ece07738896787d SHA256 ffdb077883fd054a1daefa9f1a073877f4f00a5fd4f0fc5bb7021feae5ad2e97
+AUX vtk-5.6.0-boost-property_map.patch 547 SHA1 e97b4273d94c1647c959469f6f1829101fabb108 SHA256 de594eb23b9a7c18c4c6bb67b507dd627e580fcc7e2ba8c151da94bf2949d3f1
+AUX vtk-5.6.0-cg-path.patch 1106 SHA1 fa5afd4b1a943f255e2f20fa35f440518f9d9d95 SHA256 7ad4eb9a82664a2e9c51d8763e594634027051b54ce48bb1c2fca6d1a42635c9
+AUX vtk-5.6.0-libpng14.patch 734 SHA1 e6480b68a14345d7dfa78f6d37ff7301366d99d8 SHA256 81565709c8cfb4df3c28d69df8094d15923d824345330ab5ba101a9780e6e9f9
+AUX vtk-5.6.0-odbc.patch 328 SHA1 02022f5f345ccfe8a13d99201828edb0371d7cc5 SHA256 eca7a508fcd07eb6d40e609e3670d12ce2d2d39dda11b60f418acd279ca03c25
+DIST vtk-5.4.2.tar.gz 18265310 RMD160 607df8babe7413b92a5bd4d8c264fd69798df83f SHA1 508106a15c32326aa9ac737c7f0e7212c150d55f SHA256 037c0582ee7483e0b495e45a00c4f08784691ef82c4ea159ef86731c3beda73d
+DIST vtk-5.6.0.tar.gz 20709970 SHA1 355209c485304f1b0feefcda3585d45217ffd230 SHA256 2987938ad906c5fd30ddbf60889f899d1dd8c61d80320c55ac1acadc00a95d3e
+DIST vtkDocHtml-5.4.2.tar.gz 229828672 RMD160 d6372984b74ede33713501219fecd6768edcfad3 SHA1 13da1373bb95f34b1f868b307f0e84fef6626020 SHA256 54dfe1c242c488db1d1099bbf9114f49ee2bd07859c067e77e2d6bd3c077ee25
+DIST vtkDocHtml-5.6.0.tar.gz 103149113 RMD160 da6a562345c4c143470ddcc8b926820eec2a41cb SHA1 ce7c3ea6c6b674cef0bdd2c2aa036f576c61a477 SHA256 330ab1de0963bdcd0d0d1dbcd374a579874d867bff4b298d65d46855baf2d0c2
+DIST vtkdata-5.4.2.tar.gz 52810062 RMD160 0cc24fc7a6a9bb80c619a0555eb288cc97554001 SHA1 5030523c0a9e17c47bf94fe9005e5c91069a571a SHA256 84c9895b72aec96977b8043a4be26ff58e14ae04ab2be9f19a02ca613dc3be26
+DIST vtkdata-5.6.0.tar.gz 76716069 RMD160 8499816f6d714408c0f7f584fb4d781f4426e444 SHA1 e0aa26dafd653da1db21fc97ce15aa0599d9c5ad SHA256 e6eed8e5c8d8410d7c7cf007de8c5b56bde77d38fa0522c1ac7751138323c9cf
+EBUILD vtk-5.4.2-r1.ebuild 6383 SHA1 c9ef33e8ea9bc19104d120e9d75579ad7c7c6a10 SHA256 fd6856fa49d83822d2f314ce16d97ed8c572f548d6f27bc281c5bbf8aa8d5899
+EBUILD vtk-5.6.0-r2.ebuild 7269 SHA1 8d3acf1c87c2dcfeeea19c5ee02cbd468c9f8d74 SHA256 e8d6023278c74c462448dd0e7ee4f7d6ad400bf086c19b43d207f5d026fb63b3
+MISC ChangeLog 13517 SHA1 fcf551764f09fc605c7cbd39dc1b0c2937abacdf SHA256 b2023961d13e12df7ce52df603424fa3f46ef95bcafc48b40f714fc86fe2f000
+MISC metadata.xml 574 SHA1 8160c080306039e0b3b18ced75ae6b81b8590ddc SHA256 9a3ca872da01db519865e7753e9c0922fe56972f4d6e27cbf5622afd41d23300
+MISC vtk-5.6.0-r2.ebuild~ 7269 SHA1 8d3acf1c87c2dcfeeea19c5ee02cbd468c9f8d74 SHA256 e8d6023278c74c462448dd0e7ee4f7d6ad400bf086c19b43d207f5d026fb63b3
diff --git a/sci-libs/vtk/files/vtk-5.2.0-tcl-install.patch b/sci-libs/vtk/files/vtk-5.2.0-tcl-install.patch
new file mode 100644
index 0000000..c7da786
--- /dev/null
+++ b/sci-libs/vtk/files/vtk-5.2.0-tcl-install.patch
@@ -0,0 +1,12 @@
+diff -Naur VTK/CMakeLists.txt VTK.new/CMakeLists.txt
+--- VTK/CMakeLists.txt	2008-05-13 17:50:09.000000000 -0400
++++ VTK.new/CMakeLists.txt	2008-10-05 10:34:42.000000000 -0400
+@@ -182,7 +182,7 @@
+ # Compute the proper location for installing the Tcl package.  This
+ # must be a fixed relative path below the library install location and
+ # is therefore not settable by parent projects.
+-SET(VTK_INSTALL_TCL_DIR ${VTK_INSTALL_LIB_DIR})
++SET(VTK_INSTALL_TCL_DIR ${VTK_INSTALL_PACKAGE_DIR})
+ 
+ IF(NOT VTK_INSTALL_JAVA_DIR)
+   SET(VTK_INSTALL_JAVA_DIR ${VTK_INSTALL_PACKAGE_DIR}/java)
diff --git a/sci-libs/vtk/files/vtk-5.4.2-boost-property_map.patch b/sci-libs/vtk/files/vtk-5.4.2-boost-property_map.patch
new file mode 100644
index 0000000..90c6d6a
--- /dev/null
+++ b/sci-libs/vtk/files/vtk-5.4.2-boost-property_map.patch
@@ -0,0 +1,194 @@
+diff --git a/Infovis/Testing/Cxx/TestBoostAdapter.cxx b/Infovis/Testing/Cxx/TestBoostAdapter.cxx
+index 6af2855..484a9e0 100644
+--- a/Infovis/Testing/Cxx/TestBoostAdapter.cxx
++++ b/Infovis/Testing/Cxx/TestBoostAdapter.cxx
+@@ -36,8 +36,8 @@
+ #include <boost/graph/strong_components.hpp>
+ #include <boost/graph/dijkstra_shortest_paths.hpp>
+ #include <boost/graph/transitive_closure.hpp>
+-#include <boost/property_map.hpp>
+-#include <boost/vector_property_map.hpp>
++#include <boost/property_map/property_map.hpp>
++#include <boost/property_map/vector_property_map.hpp>
+ 
+ #include "vtkGraph.h"
+ #include "vtkBoostGraphAdapter.h"
+diff --git a/Infovis/vtkBoostBiconnectedComponents.cxx b/Infovis/vtkBoostBiconnectedComponents.cxx
+index 6799dd0..dd759d5 100644
+--- a/Infovis/vtkBoostBiconnectedComponents.cxx
++++ b/Infovis/vtkBoostBiconnectedComponents.cxx
+@@ -32,7 +32,7 @@
+ #include "vtkGraph.h"
+ #include "vtkBoostGraphAdapter.h"
+ #include <boost/graph/biconnected_components.hpp>
+-#include <boost/vector_property_map.hpp>
++#include <boost/property_map/vector_property_map.hpp>
+ #include <boost/version.hpp>
+ #include <vtksys/stl/vector>
+ #include <vtksys/stl/utility>
+diff --git a/Infovis/vtkBoostBrandesCentrality.cxx b/Infovis/vtkBoostBrandesCentrality.cxx
+index e214a72..443c039 100644
+--- a/Infovis/vtkBoostBrandesCentrality.cxx
++++ b/Infovis/vtkBoostBrandesCentrality.cxx
+@@ -36,7 +36,7 @@
+ 
+ #include <boost/graph/adjacency_list.hpp>
+ #include <boost/graph/betweenness_centrality.hpp>
+-#include <boost/vector_property_map.hpp>
++#include <boost/property_map/vector_property_map.hpp>
+ 
+ using namespace boost;
+ 
+diff --git a/Infovis/vtkBoostBreadthFirstSearch.cxx b/Infovis/vtkBoostBreadthFirstSearch.cxx
+index 7fab585..6e56a7c 100644
+--- a/Infovis/vtkBoostBreadthFirstSearch.cxx
++++ b/Infovis/vtkBoostBreadthFirstSearch.cxx
+@@ -46,8 +46,8 @@
+ 
+ #include <boost/graph/visitors.hpp>
+ #include <boost/graph/breadth_first_search.hpp>
+-#include <boost/property_map.hpp>
+-#include <boost/vector_property_map.hpp>
++#include <boost/property_map/property_map.hpp>
++#include <boost/property_map/vector_property_map.hpp>
+ #include <boost/pending/queue.hpp>
+ 
+ #include <vtksys/stl/utility> // for pair
+diff --git a/Infovis/vtkBoostBreadthFirstSearchTree.cxx b/Infovis/vtkBoostBreadthFirstSearchTree.cxx
+index 5c64516..64ee7b5 100644
+--- a/Infovis/vtkBoostBreadthFirstSearchTree.cxx
++++ b/Infovis/vtkBoostBreadthFirstSearchTree.cxx
+@@ -39,7 +39,7 @@
+ #include "vtkTree.h"
+ 
+ #include <boost/graph/breadth_first_search.hpp>
+-#include <boost/vector_property_map.hpp>
++#include <boost/property_map/vector_property_map.hpp>
+ #include <boost/pending/queue.hpp>
+ 
+ using namespace boost;
+diff --git a/Infovis/vtkBoostConnectedComponents.cxx b/Infovis/vtkBoostConnectedComponents.cxx
+index 69e9d8f..c88f4ab 100644
+--- a/Infovis/vtkBoostConnectedComponents.cxx
++++ b/Infovis/vtkBoostConnectedComponents.cxx
+@@ -33,7 +33,7 @@
+ 
+ #include "vtkBoostGraphAdapter.h"
+ #include <boost/graph/strong_components.hpp>
+-#include <boost/vector_property_map.hpp>
++#include <boost/property_map/vector_property_map.hpp>
+ 
+ using namespace boost;
+ 
+diff --git a/Infovis/vtkBoostKruskalMinimumSpanningTree.cxx b/Infovis/vtkBoostKruskalMinimumSpanningTree.cxx
+index b0c89de..7ea3aa9 100644
+--- a/Infovis/vtkBoostKruskalMinimumSpanningTree.cxx
++++ b/Infovis/vtkBoostKruskalMinimumSpanningTree.cxx
+@@ -40,7 +40,7 @@ PURPOSE.  See the above copyright notice for more information.
+ #include "vtkTree.h"
+ 
+ #include <boost/graph/kruskal_min_spanning_tree.hpp>
+-#include <boost/vector_property_map.hpp>
++#include <boost/property_map/vector_property_map.hpp>
+ #include <boost/pending/queue.hpp>
+ 
+ using namespace boost;
+diff --git a/Infovis/vtkBoostPrimMinimumSpanningTree.cxx b/Infovis/vtkBoostPrimMinimumSpanningTree.cxx
+index 935d0f7..48716fd 100644
+--- a/Infovis/vtkBoostPrimMinimumSpanningTree.cxx
++++ b/Infovis/vtkBoostPrimMinimumSpanningTree.cxx
+@@ -39,7 +39,7 @@ PURPOSE.  See the above copyright notice for more information.
+ #include "vtkTree.h"
+ 
+ #include <boost/graph/prim_minimum_spanning_tree.hpp>
+-#include <boost/vector_property_map.hpp>
++#include <boost/property_map/vector_property_map.hpp>
+ #include <boost/pending/queue.hpp>
+ 
+ using namespace boost;
+diff --git a/Infovis/vtkTreeLayoutStrategy.cxx b/Infovis/vtkTreeLayoutStrategy.cxx
+index 6efa586..222afe9 100644
+--- a/Infovis/vtkTreeLayoutStrategy.cxx
++++ b/Infovis/vtkTreeLayoutStrategy.cxx
+@@ -375,8 +375,8 @@ void vtkTreeLayoutStrategy::PrintSelf(ostream& os, vtkIndent indent)
+ #include "vtkTreeToBoostAdapter.h"
+ #include <boost/graph/visitors.hpp>
+ #include <boost/graph/depth_first_search.hpp>
+-#include <boost/property_map.hpp>
+-#include <boost/vector_property_map.hpp>
++#include <boost/property_map/property_map.hpp>
++#include <boost/property_map/vector_property_map.hpp>
+ #include <boost/pending/queue.hpp>
+ 
+ using namespace boost;
+diff --git a/Parallel/vtkPBGLBreadthFirstSearch.cxx b/Parallel/vtkPBGLBreadthFirstSearch.cxx
+index 2b4681b..eebeaa9 100644
+--- a/Parallel/vtkPBGLBreadthFirstSearch.cxx
++++ b/Parallel/vtkPBGLBreadthFirstSearch.cxx
+@@ -50,8 +50,8 @@
+ #include <boost/graph/distributed/breadth_first_search.hpp>
+ #include <boost/parallel/algorithm.hpp>
+ #include <boost/graph/visitors.hpp>
+-#include <boost/property_map.hpp>
+-#include <boost/vector_property_map.hpp>
++#include <boost/property_map/property_map.hpp>
++#include <boost/property_map/vector_property_map.hpp>
+ #include <boost/pending/queue.hpp>
+ 
+ #include <vtksys/stl/utility> // for pair
+diff --git a/Parallel/vtkPBGLGraphAdapter.h b/Parallel/vtkPBGLGraphAdapter.h
+index 7b467b0..bacfd3a 100644
+--- a/Parallel/vtkPBGLGraphAdapter.h
++++ b/Parallel/vtkPBGLGraphAdapter.h
+@@ -31,7 +31,7 @@
+ #include <boost/graph/distributed/mpi_process_group.hpp>
+ #include <boost/graph/properties.hpp>
+ #include <boost/graph/parallel/container_traits.hpp>
+-#include <boost/parallel/local_property_map.hpp>
++#include <boost/property_map/parallel/local_property_map.hpp>
+ #include <boost/serialization/base_object.hpp>
+ #include <boost/functional/hash.hpp>
+ //ETX
+diff --git a/Parallel/vtkPBGLMinimumSpanningTree.cxx b/Parallel/vtkPBGLMinimumSpanningTree.cxx
+index da4647e..f9c3229 100644
+--- a/Parallel/vtkPBGLMinimumSpanningTree.cxx
++++ b/Parallel/vtkPBGLMinimumSpanningTree.cxx
+@@ -48,8 +48,8 @@
+ #include <boost/graph/distributed/dehne_gotz_min_spanning_tree.hpp>
+ #include <boost/graph/distributed/vertex_list_adaptor.hpp>
+ #include <boost/parallel/global_index_map.hpp>
+-#include <boost/property_map.hpp>
+-#include <boost/vector_property_map.hpp>
++#include <boost/property_map/property_map.hpp>
++#include <boost/property_map/vector_property_map.hpp>
+ #include <boost/pending/queue.hpp>
+ 
+ #include <vtksys/stl/utility> // for pair
+diff --git a/Parallel/vtkPBGLShortestPaths.cxx b/Parallel/vtkPBGLShortestPaths.cxx
+index 074143f..8517304 100644
+--- a/Parallel/vtkPBGLShortestPaths.cxx
++++ b/Parallel/vtkPBGLShortestPaths.cxx
+@@ -49,8 +49,8 @@
+ 
+ #include <boost/graph/distributed/delta_stepping_shortest_paths.hpp>
+ #include <boost/parallel/algorithm.hpp>
+-#include <boost/property_map.hpp>
+-#include <boost/vector_property_map.hpp>
++#include <boost/property_map/property_map.hpp>
++#include <boost/property_map/vector_property_map.hpp>
+ 
+ #include <vtksys/stl/utility> // for pair
+ 
+diff --git a/Parallel/vtkPBGLVertexColoring.cxx b/Parallel/vtkPBGLVertexColoring.cxx
+index 9aa87a0..301a245 100644
+--- a/Parallel/vtkPBGLVertexColoring.cxx
++++ b/Parallel/vtkPBGLVertexColoring.cxx
+@@ -47,7 +47,7 @@
+ 
+ #include <boost/graph/distributed/boman_et_al_graph_coloring.hpp>
+ #include <boost/parallel/algorithm.hpp>
+-#include <boost/property_map.hpp>
++#include <boost/property_map/property_map.hpp>
+ 
+ #include <vtksys/stl/utility> // for pair
+ 
diff --git a/sci-libs/vtk/files/vtk-5.4.2-cg-path.patch b/sci-libs/vtk/files/vtk-5.4.2-cg-path.patch
new file mode 100644
index 0000000..53d43ee
--- /dev/null
+++ b/sci-libs/vtk/files/vtk-5.4.2-cg-path.patch
@@ -0,0 +1,35 @@
+diff -Naur VTK/CMake/FindCg.cmake VTK.new/CMake/FindCg.cmake
+--- VTK/CMake/FindCg.cmake	2005-10-04 11:25:51.000000000 -0400
++++ VTK.new/CMake/FindCg.cmake	2009-07-17 14:10:30.000000000 -0400
+@@ -82,6 +82,7 @@
+     FIND_PROGRAM( CG_COMPILER cgc
+       /usr/bin
+       /usr/local/bin
++      /opt/nvidia-cg-toolkit/bin
+       DOC "The Cg Compiler"
+       )
+     GET_FILENAME_COMPONENT(CG_COMPILER_DIR "${CG_COMPILER}" PATH)
+@@ -89,6 +90,7 @@
+     FIND_PATH( CG_INCLUDE_PATH Cg/cg.h
+       /usr/include
+       /usr/local/include
++      /opt/nvidia-cg-toolkit/include
+       ${CG_COMPILER_SUPER_DIR}/include
+       DOC "The directory where Cg/cg.h resides"
+       )
+@@ -98,6 +100,7 @@
+       /usr/lib
+       /usr/local/lib64
+       /usr/local/lib
++      /opt/nvidia-cg-toolkit/lib
+       ${CG_COMPILER_SUPER_DIR}/lib64
+       ${CG_COMPILER_SUPER_DIR}/lib
+       DOC "The Cg runtime library"
+@@ -108,6 +111,7 @@
+       /usr/lib
+       /usr/local/lib64
+       /usr/local/lib
++      /opt/nvidia-cg-toolkit/lib
+       ${CG_COMPILER_SUPER_DIR}/lib64
+       ${CG_COMPILER_SUPER_DIR}/lib
+       DOC "The Cg runtime library"
diff --git a/sci-libs/vtk/files/vtk-5.4.2-libpng14.patch b/sci-libs/vtk/files/vtk-5.4.2-libpng14.patch
new file mode 100644
index 0000000..1f12ae9
--- /dev/null
+++ b/sci-libs/vtk/files/vtk-5.4.2-libpng14.patch
@@ -0,0 +1,20 @@
+--- IO/vtkPNGReader.cxx
++++ IO/vtkPNGReader.cxx
+@@ -116,7 +116,7 @@
+   // minimum of a byte per pixel
+   if (color_type == PNG_COLOR_TYPE_GRAY && bit_depth < 8) 
+     {
+-    png_set_gray_1_2_4_to_8(png_ptr);
++    png_set_expand_gray_1_2_4_to_8(png_ptr);
+     }
+ 
+   // add alpha if any alpha found
+@@ -225,7 +225,7 @@
+   // minimum of a byte per pixel
+   if (color_type == PNG_COLOR_TYPE_GRAY && bit_depth < 8) 
+     {
+-    png_set_gray_1_2_4_to_8(png_ptr);
++    png_set_expand_gray_1_2_4_to_8(png_ptr);
+     }
+ 
+   // add alpha if any alpha found
diff --git a/sci-libs/vtk/files/vtk-5.6.0-R.patch b/sci-libs/vtk/files/vtk-5.6.0-R.patch
new file mode 100644
index 0000000..1327121
--- /dev/null
+++ b/sci-libs/vtk/files/vtk-5.6.0-R.patch
@@ -0,0 +1,57 @@
+diff --git a/CMake/FindR.cmake b/CMake/FindR.cmake
+index ee49570..c830db0 100644
+--- a/CMake/FindR.cmake
++++ b/CMake/FindR.cmake
+@@ -18,13 +18,12 @@ IF (R_COMMAND)
+ ENDIF (R_COMMAND)
+ SET(CMAKE_FIND_APPBUNDLE ${TEMP_CMAKE_FIND_APPBUNDLE})
+ 
+-FIND_PATH(R_INCLUDE_DIR R.h PATHS /usr/local/lib /usr/local/lib64 PATH_SUFFIXES R/include DOC "Path to file R.h")
++FIND_PATH(R_INCLUDE_DIR R.h PATHS /usr/lib /usr/lib64 PATH_SUFFIXES R/include DOC "Path to file R.h")
+ FIND_LIBRARY(R_LIBRARY_BASE R PATHS ${R_BASE_DIR} PATH_SUFFIXES /lib DOC "R library (example libR.a, libR.dylib, etc.).")
+-FIND_LIBRARY(R_LIBRARY_BLAS Rblas PATHS ${R_BASE_DIR} PATH_SUFFIXES /lib DOC "Rblas library (example libRblas.a, libRblas.dylib, etc.).")
+-FIND_LIBRARY(R_LIBRARY_LAPACK Rlapack PATHS ${R_BASE_DIR} PATH_SUFFIXES /lib  DOC "Rlapack library (example libRlapack.a, libRlapack.dylib, etc.).")
++FIND_LIBRARY(R_LIBRARY_MATH Rmath PATHS ${R_BASE_DIR} PATH_SUFFIXES /lib DOC "Rmath library (example libRmath.a, libRmath.dylib, etc.).")
+ FIND_LIBRARY(R_LIBRARY_READLINE readline DOC "(Optional) system readline library. Only required if the R libraries were build with readline support.")
+ 
+-SET(R_LIBRARIES ${R_LIBRARY_BASE} ${R_LIBRARY_BLAS} ${R_LIBRARY_LAPACK} ${R_LIBRARY_BASE})
++SET(R_LIBRARIES ${R_LIBRARY_BASE} ${R_LIBRARY_MATH} ${R_LIBRARY_BASE})
+ IF (R_LIBRARY_READLINE)
+   SET(R_LIBRARIES ${R_LIBRARIES} ${R_LIBRARY_READLINE})
+ ENDIF (R_LIBRARY_READLINE)
+diff --git a/CMakeLists.txt b/CMakeLists.txt
+index 9d4e881..1a828a4 100644
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -1054,8 +1054,18 @@ IF(VTK_WRAP_JAVA)
+   ENDIF(JAVA_AWT_LIBRARY)
+ ENDIF(VTK_WRAP_JAVA)
+ 
++IF(VTK_USE_GNU_R)
++  FIND_PACKAGE(R)
++ENDIF(VTK_USE_GNU_R)
+ 
+-
++IF(VTK_USE_BOOST)
++  if (VTK_USE_PARALLEL_BGL)
++    FIND_PACKAGE(Boost 1.39.0 REQUIRED
++      COMPONENTS mpi serialization filesystem system graph_parallel)
++  else (VTK_USE_PARALLEL_BGL)
++    FIND_PACKAGE(Boost REQUIRED)
++  endif (VTK_USE_PARALLEL_BGL)
++ENDIF(VTK_USE_BOOST)
+ #-----------------------------------------------------------------------------
+ # The entire VTK tree should use the same include path.
+ 
+diff --git a/Graphics/vtkRInterface.cxx b/Graphics/vtkRInterface.cxx
+index 324e845..56a4869 100644
+--- a/Graphics/vtkRInterface.cxx
++++ b/Graphics/vtkRInterface.cxx
+@@ -23,6 +23,7 @@
+ #undef HAVE_UINTPTR_T
+ #ifdef HAVE_VTK_UINTPTR_T
+ #define HAVE_UINTPTR_T HAVE_VTK_UINTPTR_T
++#include <stdint.h>
+ #endif
+ 
+ #include "vtkInformation.h"
diff --git a/sci-libs/vtk/files/vtk-5.6.0-boost-property_map.patch b/sci-libs/vtk/files/vtk-5.6.0-boost-property_map.patch
new file mode 100644
index 0000000..9319378
--- /dev/null
+++ b/sci-libs/vtk/files/vtk-5.6.0-boost-property_map.patch
@@ -0,0 +1,13 @@
+diff --git a/Infovis/vtkTreeLayoutStrategy.cxx b/Infovis/vtkTreeLayoutStrategy.cxx
+index 4a764ea..74d0b53 100644
+--- a/Infovis/vtkTreeLayoutStrategy.cxx
++++ b/Infovis/vtkTreeLayoutStrategy.cxx
+@@ -388,7 +388,7 @@ void vtkTreeLayoutStrategy::PrintSelf(ostream& os, vtkIndent indent)
+ #include "vtkTreeToBoostAdapter.h"
+ #include <boost/graph/visitors.hpp>
+ #include <boost/graph/depth_first_search.hpp>
+-#include <boost/property_map.hpp>
++#include <boost/property_map/property_map.hpp>
+ #include <boost/pending/queue.hpp>
+ 
+ using namespace boost;
diff --git a/sci-libs/vtk/files/vtk-5.6.0-cg-path.patch b/sci-libs/vtk/files/vtk-5.6.0-cg-path.patch
new file mode 100644
index 0000000..984bf50
--- /dev/null
+++ b/sci-libs/vtk/files/vtk-5.6.0-cg-path.patch
@@ -0,0 +1,36 @@
+diff --git a/CMake/FindCg.cmake b/CMake/FindCg.cmake
+index ceb41de..5eb6003 100644
+--- a/CMake/FindCg.cmake
++++ b/CMake/FindCg.cmake
+@@ -82,6 +82,7 @@ ELSE (APPLE)
+     FIND_PROGRAM( CG_COMPILER cgc
+       /usr/bin
+       /usr/local/bin
++      /opt/nvidia-cg-toolkit/bin
+       DOC "The Cg Compiler"
+       )
+     GET_FILENAME_COMPONENT(CG_COMPILER_DIR "${CG_COMPILER}" PATH)
+@@ -89,6 +90,7 @@ ELSE (APPLE)
+     FIND_PATH( CG_INCLUDE_PATH Cg/cg.h
+       /usr/include
+       /usr/local/include
++      /opt/nvidia-cg-toolkit/include
+       ${CG_COMPILER_SUPER_DIR}/include
+       DOC "The directory where Cg/cg.h resides"
+       )
+@@ -98,6 +100,7 @@ ELSE (APPLE)
+       /usr/lib
+       /usr/local/lib64
+       /usr/local/lib
++      /opt/nvidia-cg-toolkit/lib
+       ${CG_COMPILER_SUPER_DIR}/lib64
+       ${CG_COMPILER_SUPER_DIR}/lib
+       DOC "The Cg runtime library"
+@@ -108,6 +111,7 @@ ELSE (APPLE)
+       /usr/lib
+       /usr/local/lib64
+       /usr/local/lib
++      /opt/nvidia-cg-toolkit/lib
+       ${CG_COMPILER_SUPER_DIR}/lib64
+       ${CG_COMPILER_SUPER_DIR}/lib
+       DOC "The Cg runtime library"
diff --git a/sci-libs/vtk/files/vtk-5.6.0-libpng14.patch b/sci-libs/vtk/files/vtk-5.6.0-libpng14.patch
new file mode 100644
index 0000000..db1f87d
--- /dev/null
+++ b/sci-libs/vtk/files/vtk-5.6.0-libpng14.patch
@@ -0,0 +1,22 @@
+diff --git a/IO/vtkPNGReader.cxx b/IO/vtkPNGReader.cxx
+index d1f5c2f..0bf00e4 100644
+--- a/IO/vtkPNGReader.cxx
++++ b/IO/vtkPNGReader.cxx
+@@ -116,7 +116,7 @@ void vtkPNGReader::ExecuteInformation()
+   // minimum of a byte per pixel
+   if (color_type == PNG_COLOR_TYPE_GRAY && bit_depth < 8) 
+     {
+-    png_set_gray_1_2_4_to_8(png_ptr);
++    png_set_expand_gray_1_2_4_to_8(png_ptr);
+     }
+ 
+   // add alpha if any alpha found
+@@ -225,7 +225,7 @@ void vtkPNGReaderUpdate2(vtkPNGReader *self, OT *outPtr,
+   // minimum of a byte per pixel
+   if (color_type == PNG_COLOR_TYPE_GRAY && bit_depth < 8) 
+     {
+-    png_set_gray_1_2_4_to_8(png_ptr);
++    png_set_expand_gray_1_2_4_to_8(png_ptr);
+     }
+ 
+   // add alpha if any alpha found
diff --git a/sci-libs/vtk/files/vtk-5.6.0-odbc.patch b/sci-libs/vtk/files/vtk-5.6.0-odbc.patch
new file mode 100644
index 0000000..be24af1
--- /dev/null
+++ b/sci-libs/vtk/files/vtk-5.6.0-odbc.patch
@@ -0,0 +1,12 @@
+diff -Naur CMake/FindODBC.cmake.orig CMake/FindODBC.cmake
+--- CMake/FindODBC.cmake.orig	2008-10-08 13:51:36.000000000 -0400
++++ CMake/FindODBC.cmake	2010-01-21 22:11:26.000000000 -0500
+@@ -30,7 +30,7 @@
+ )
+ 
+ FIND_LIBRARY( ODBC_LIBRARY 
+-  NAMES iodbc unixodbc
++  NAMES iodbc unixodbc odbc
+   PATHS
+   /usr/lib
+   /usr/lib/odbc
diff --git a/sci-libs/vtk/metadata.xml b/sci-libs/vtk/metadata.xml
new file mode 100644
index 0000000..4671a1c
--- /dev/null
+++ b/sci-libs/vtk/metadata.xml
@@ -0,0 +1,20 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>sci</herd>
+<herd>java</herd>
+<maintainer>
+  <email>markusle@gentoo.org</email>
+  <name>Markus Dittrich</name>
+</maintainer>
+<maintainer>
+  <email>jlec@gentoo.org</email>
+  <name>Justin Lecher</name>
+</maintainer>
+<use>
+	<flag name='boost'>Add support for boost</flag>
+	<flag name='cg'>Use nvidia's cg shaders</flag>
+	<flag name='patented'>Build patented classes</flag>
+	<flag name='R'>Enable support for dev-lang/R</flag>
+</use>
+</pkgmetadata>
diff --git a/sci-libs/vtk/vtk-5.4.2-r1.ebuild b/sci-libs/vtk/vtk-5.4.2-r1.ebuild
new file mode 100644
index 0000000..5d9e630
--- /dev/null
+++ b/sci-libs/vtk/vtk-5.4.2-r1.ebuild
@@ -0,0 +1,231 @@
+# Copyright 1999-2010 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/vtk/vtk-5.4.2-r1.ebuild,v 1.14 2010/11/09 07:57:14 xarthisius Exp $
+
+EAPI="3"
+PYTHON_DEPEND="python? 2"
+
+inherit cmake-utils eutils flag-o-matic java-pkg-opt-2 python qt4 versionator toolchain-funcs
+
+# Short package version
+SPV="$(get_version_component_range 1-2)"
+
+DESCRIPTION="The Visualization Toolkit"
+HOMEPAGE="http://www.vtk.org"
+SRC_URI="http://www.${PN}.org/files/release/${SPV}/${P}.tar.gz
+		examples? ( http://www.${PN}.org/files/release/${SPV}/${PN}data-${PV}.tar.gz )
+		doc? ( http://www.${PN}.org/doc/release/${SPV}/${PN}DocHtml-${PV}.tar.gz )"
+
+LICENSE="BSD LGPL-2"
+KEYWORDS="~amd64 ~x86"
+SLOT="0"
+IUSE="boost cg doc examples mpi patented python qt4 tcl tk threads"
+RDEPEND="mpi? ( || (
+					sys-cluster/openmpi
+					sys-cluster/mpich2[cxx] ) )
+	cg? ( media-gfx/nvidia-cg-toolkit )
+	tcl? ( >=dev-lang/tcl-8.2.3 )
+	tk? ( >=dev-lang/tk-8.2.3 )
+	java? ( >=virtual/jre-1.5 )
+	qt4? ( x11-libs/qt-core:4
+			x11-libs/qt-opengl:4
+			x11-libs/qt-gui:4
+			x11-libs/qt-sql )
+	examples? ( x11-libs/qt-core:4[qt3support]
+			x11-libs/qt-gui:4[qt3support] )
+	dev-libs/expat
+	dev-libs/libxml2
+	media-libs/freetype
+	virtual/jpeg
+	media-libs/libpng
+	media-libs/tiff
+	virtual/opengl
+	x11-libs/libXmu"
+
+DEPEND="${RDEPEND}
+		java? ( >=virtual/jdk-1.5 )
+		boost? ( >=dev-libs/boost-1.40.0 )
+		>=dev-util/cmake-2.6"
+
+S="${WORKDIR}"/VTK
+
+pkg_setup() {
+	echo
+	einfo "Please note that the VTK build occasionally fails when"
+	einfo "using parallel make. Hence, if you experience a build"
+	einfo "failure please try re-emerging with MAKEOPTS=\"-j1\" first."
+	echo
+
+	java-pkg-opt-2_pkg_setup
+
+	use python && python_set_active_version 2
+	use qt4 && qt4_pkg_setup
+}
+
+src_prepare() {
+	epatch "${FILESDIR}"/${P}-cg-path.patch
+	epatch "${FILESDIR}"/${PN}-5.2.0-tcl-install.patch
+	epatch "${FILESDIR}"/${P}-boost-property_map.patch
+	epatch "${FILESDIR}"/${P}-libpng14.patch
+	sed -e "s:@VTK_TCL_LIBRARY_DIR@:/usr/$(get_libdir):" \
+		-i Wrapping/Tcl/pkgIndex.tcl.in \
+		|| die "Failed to fix tcl pkgIndex file"
+}
+
+src_configure() {
+	# general configuration
+	local mycmakeargs=(
+		-Wno-dev
+		-DVTK_INSTALL_PACKAGE_DIR=/$(get_libdir)/${PN}-${SPV}
+		-DCMAKE_SKIP_RPATH=YES
+		-DVTK_DIR="${S}"
+		-DVTK_INSTALL_LIB_DIR=/$(get_libdir)/
+		-DVTK_DATA_ROOT:PATH=/usr/share/${PN}/data
+		-DCMAKE_INSTALL_PREFIX=/usr
+		-DBUILD_SHARED_LIBS=ON
+		-DVTK_USE_SYSTEM_FREETYPE=ON
+		-DVTK_USE_SYSTEM_JPEG=ON
+		-DVTK_USE_SYSTEM_PNG=ON
+		-DVTK_USE_SYSTEM_TIFF=ON
+		-DVTK_USE_SYSTEM_ZLIB=ON
+		-DVTK_USE_SYSTEM_EXPAT=ON
+		-DVTK_USE_SYSTEM_LIBXML2=ON
+		-DBUILD_TESTING=OFF
+		-DBUILD_EXAMPLES=OFF
+		-DVTK_USE_HYBRID=ON
+		-DVTK_USE_GL2PS=ON
+		-DVTK_USE_RENDERING=ON)
+
+	# use flag triggered options
+	mycmakeargs+=(
+		$(cmake-utils_use boost VTK_USE_BOOST)
+		$(cmake-utils_use cg VTK_USE_CG_SHADERS)
+		$(cmake-utils_use tcl VTK_WRAP_TCL)
+		$(cmake-utils_use tk VTK_USE_TK)
+		$(cmake-utils_use threads VTK_USE_PARALLEL)
+		$(cmake-utils_use patented VTK_USE_PATENTED)
+		$(cmake-utils_use doc DOCUMENTATION_HTML_HELP)
+		$(cmake-utils_use_build doc DOCUMENTATION)
+		$(cmake-utils_use mpi VTK_USE_MPI))
+
+	# mpi needs the parallel framework
+	if use mpi && use !threads; then
+		mycmakeargs+=(-DVTK_USE_PARALLEL=ON)
+	fi
+
+	if use java; then
+		mycmakeargs+=(
+			-DVTK_WRAP_JAVA=ON
+			-DJAVA_AWT_INCLUDE_PATH=`java-config -O`/include
+			-DJAVA_INCLUDE_PATH:PATH=`java-config -O`/include
+			-DJAVA_INCLUDE_PATH2:PATH=`java-config -O`/include/linux)
+
+		if [ "${ARCH}" == "amd64" ]; then
+			mycmakeargs+=(-DJAVA_AWT_LIBRARY=`java-config -O`/jre/lib/${ARCH}/libjawt.so)
+		else
+			mycmakeargs+=(-DJAVA_AWT_LIBRARY:PATH=`java-config -O`/jre/lib/i386/libjawt.so)
+		fi
+	fi
+
+	if use python; then
+		mycmakeargs+=(
+			-DVTK_WRAP_PYTHON=ON
+			-DPYTHON_INCLUDE_PATH=$(python_get_includedir)
+			-DPYTHON_LIBRARY=$(python_get_library)
+			-DVTK_PYTHON_SETUP_ARGS:STRING=--root="${D}")
+	fi
+
+	if use qt4 ; then
+		mycmakeargs+=(
+			-DVTK_USE_GUISUPPORT=ON
+			-DVTK_USE_QVTK=ON
+			-DVTK_USE_QVTK_QTOPENGL=ON
+			-DQT_WRAP_CPP=ON
+			-DQT_WRAP_UI=ON)
+	fi
+
+	if use qt4; then
+		mycmakeargs+=(
+			-DVTK_INSTALL_QT_DIR=/$(get_libdir)/qt4/plugins/${PN}
+			-DDESIRED_QT_VERSION=4
+			-DQT_MOC_EXECUTABLE=/usr/bin/moc
+			-DQT_UIC_EXECUTABLE=/usr/bin/uic
+			-DQT_INCLUDE_DIR=/usr/include/qt4
+			-DQT_QMAKE_EXECUTABLE=/usr/bin/qmake)
+	fi
+
+	cmake-utils_src_configure
+}
+
+src_install() {
+	cmake-utils_src_install
+
+	# install docs
+	dohtml "${S}"/README.html || die "Failed to install docs"
+
+	# install Tcl docs
+	docinto vtk_tcl
+	dodoc "${S}"/Wrapping/Tcl/README || \
+		die "Failed to install Tcl docs"
+
+	# install examples
+	if use examples; then
+		dodir /usr/share/${PN} || \
+			die "Failed to create data/examples directory"
+
+		cp -pPR "${S}"/Examples "${D}"/usr/share/${PN}/examples || \
+			die "Failed to copy example files"
+
+		# fix example's permissions
+		find "${D}"/usr/share/${PN}/examples -type d -exec \
+			chmod 0755 {} \; || \
+			die "Failed to fix example directories permissions"
+		find "${D}"/usr/share/${PN}/examples -type f -exec \
+			chmod 0644 {} \; || \
+			die "Failed to fix example files permissions"
+
+		cp -pPR "${WORKDIR}"/VTKData "${D}"/usr/share/${PN}/data || \
+			die "Failed to copy data files"
+
+		# fix data's permissions
+		find "${D}"/usr/share/${PN}/data -type d -exec \
+			chmod 0755 {} \; || \
+			die "Failed to fix data directories permissions"
+		find "${D}"/usr/share/${PN}/data -type f -exec \
+			chmod 0644 {} \; || \
+			die "Failed to fix data files permissions"
+	fi
+
+	#install big docs
+	if use doc; then
+		cd "${WORKDIR}"/html
+		rm -f *.md5 || die "Failed to remove superfluous hashes"
+		einfo "Installing API docs. This may take some time."
+		insinto "/usr/share/doc/${PF}/api-docs"
+		doins -r ./* || die "Failed to install docs"
+	fi
+
+	# environment
+	echo "VTK_DATA_ROOT=/usr/share/${PN}/data" >> "${T}"/40${PN}
+	echo "VTK_DIR=/usr/$(get_libdir)/${PN}-${SPV}" >> "${T}"/40${PN}
+	echo "VTKHOME=/usr" >> "${T}"/40${PN}
+	doenvd "${T}"/40${PN}
+}
+
+pkg_postinst() {
+	if use patented; then
+		ewarn "Using patented code in VTK may require a license."
+		ewarn "For more information, please read:"
+		ewarn "http://public.kitware.com/cgi-bin/vtkfaq?req=show&file=faq07.005.htp"
+	fi
+
+	if use python; then
+		python_mod_optimize vtk
+	fi
+}
+
+pkg_postrm() {
+	if use python; then
+		python_mod_cleanup vtk
+	fi
+}
diff --git a/sci-libs/vtk/vtk-5.6.0-r2.ebuild b/sci-libs/vtk/vtk-5.6.0-r2.ebuild
new file mode 100644
index 0000000..8a0fa0b
--- /dev/null
+++ b/sci-libs/vtk/vtk-5.6.0-r2.ebuild
@@ -0,0 +1,254 @@
+# Copyright 1999-2010 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/vtk/vtk-5.6.0-r2.ebuild,v 1.6 2010/11/08 17:48:45 xarthisius Exp $
+
+EAPI="3"
+PYTHON_DEPEND="python? 2"
+
+inherit eutils flag-o-matic java-pkg-opt-2 python qt4 versionator toolchain-funcs cmake-utils
+
+# Short package version
+SPV="$(get_version_component_range 1-2)"
+
+DESCRIPTION="The Visualization Toolkit"
+HOMEPAGE="http://www.vtk.org"
+SRC_URI="http://www.${PN}.org/files/release/${SPV}/${P}.tar.gz
+		examples? ( http://www.${PN}.org/files/release/${SPV}/${PN}data-${PV}.tar.gz )
+		doc? ( http://www.${PN}.org/doc/release/${SPV}/${PN}DocHtml-${PV}.tar.gz )"
+
+LICENSE="BSD LGPL-2"
+KEYWORDS="~amd64 ~x86 ~amd64-linux"
+SLOT="0"
+IUSE="boost cg doc examples ffmpeg java mpi mysql odbc patented postgres python qt4 tcl theora tk threads R"
+RDEPEND="
+	cg? ( media-gfx/nvidia-cg-toolkit )
+	examples? (
+			x11-libs/qt-core:4[qt3support]
+			x11-libs/qt-gui:4[qt3support] )
+	ffmpeg? ( media-video/ffmpeg )
+	java? ( >=virtual/jre-1.5 )
+	mpi? ( virtual/mpi[cxx,romio] )
+	mysql? ( virtual/mysql )
+	odbc? ( dev-db/unixODBC )
+	postgres? ( dev-db/postgresql-base )
+	qt4? (
+			x11-libs/qt-core:4
+			x11-libs/qt-gui:4
+			x11-libs/qt-opengl:4
+			x11-libs/qt-sql:4
+			x11-libs/qt-webkit:4 )
+	tcl? ( >=dev-lang/tcl-8.2.3 )
+	theora? ( media-libs/libtheora )
+	tk? ( >=dev-lang/tk-8.2.3 )
+	R? ( dev-lang/R )
+	dev-libs/expat
+	dev-libs/libxml2
+	media-libs/freetype
+	virtual/jpeg
+	media-libs/libpng
+	media-libs/mesa
+	media-libs/tiff
+	sys-libs/zlib
+	virtual/opengl
+	x11-libs/libX11
+	x11-libs/libXmu
+	x11-libs/libXt"
+
+DEPEND="${RDEPEND}
+		java? ( >=virtual/jdk-1.5 )
+		boost? ( >=dev-libs/boost-1.40.0[mpi?] )
+		mpi? ( >=dev-util/cmake-2.8.1-r2 )
+		>=dev-util/cmake-2.6"
+
+S="${WORKDIR}"/VTK
+
+pkg_setup() {
+	echo
+	einfo "Please note that the VTK build occasionally fails when"
+	einfo "using parallel make. Hence, if you experience a build"
+	einfo "failure please try re-emerging with MAKEOPTS=\"-j1\" first."
+	echo
+
+	java-pkg-opt-2_pkg_setup
+
+	use python && python_set_active_version 2
+	use qt4 && qt4_pkg_setup
+	append-cppflags -D__STDC_CONSTANT_MACROS
+}
+
+src_prepare() {
+	epatch "${FILESDIR}"/${P}-cg-path.patch
+	epatch "${FILESDIR}"/${PN}-5.2.0-tcl-install.patch
+	epatch "${FILESDIR}"/${P}-boost-property_map.patch
+	epatch "${FILESDIR}"/${P}-libpng14.patch
+	epatch "${FILESDIR}"/${P}-R.patch
+	epatch "${FILESDIR}"/${P}-odbc.patch
+	sed -e "s:@VTK_TCL_LIBRARY_DIR@:/usr/$(get_libdir):" \
+		-i Wrapping/Tcl/pkgIndex.tcl.in \
+		|| die "Failed to fix tcl pkgIndex file"
+}
+
+src_configure() {
+	# general configuration
+	local mycmakeargs=(
+		-Wno-dev
+		-DVTK_INSTALL_PACKAGE_DIR=/$(get_libdir)/${PN}-${SPV}
+		-DCMAKE_SKIP_RPATH=YES
+		-DVTK_DIR="${S}"
+		-DVTK_INSTALL_LIB_DIR=/$(get_libdir)/
+		-DVTK_DATA_ROOT:PATH="${EPREFIX}"/usr/share/${PN}/data
+		-DCMAKE_INSTALL_PREFIX="${EPREFIX}"/usr
+		-DBUILD_SHARED_LIBS=ON
+		-DVTK_USE_SYSTEM_EXPAT=ON
+		-DVTK_USE_SYSTEM_FREETYPE=ON
+		-DVTK_USE_SYSTEM_JPEG=ON
+		-DVTK_USE_SYSTEM_LIBXML2=ON
+		-DVTK_USE_SYSTEM_PNG=ON
+		-DVTK_USE_SYSTEM_TIFF=ON
+		-DVTK_USE_SYSTEM_ZLIB=ON
+		-DBUILD_TESTING=OFF
+		-DBUILD_EXAMPLES=OFF
+		-DVTK_USE_HYBRID=ON
+		-DVTK_USE_GL2PS=ON
+		-DVTK_USE_RENDERING=ON)
+
+	# use flag triggered options
+	mycmakeargs+=(
+		$(cmake-utils_use boost VTK_USE_BOOST)
+		$(cmake-utils_use cg VTK_USE_CG_SHADERS)
+		$(cmake-utils_use doc DOCUMENTATION_HTML_HELP)
+		$(cmake-utils_use_build doc DOCUMENTATION)
+		$(cmake-utils_use java VTK_USE_JAVA)
+		$(cmake-utils_use mpi VTK_USE_MPI)
+		$(cmake-utils_use patented VTK_USE_PATENTED)
+		$(cmake-utils_use qt4 VTK_USE_QT)
+		$(cmake-utils_use tcl VTK_WRAP_TCL)
+		$(cmake-utils_use theora VTK_USE_OGGTHEORA_ENCODER)
+		$(cmake-utils_use ffmpeg VTK_USE_FFMPEG_ENCODER)
+		$(cmake-utils_use tk VTK_USE_TK)
+		$(cmake-utils_use threads VTK_USE_PARALLEL)
+		$(cmake-utils_use R VTK_USE_GNU_R)
+		$(cmake-utils_use mysql VTK_USE_MYSQL)
+		$(cmake-utils_use postgres VTK_USE_POSTGRES)
+		$(cmake-utils_use odbc VTK_USE_ODBC) )
+
+	use theora &&
+	mycmakeargs+=(-DVTK_USE_SYSTEM_OGGTHEORA=ON)
+
+	# mpi needs the parallel framework
+	if use mpi && use !threads; then
+		mycmakeargs+=(-DVTK_USE_PARALLEL=ON)
+	fi
+
+	if use java; then
+		mycmakeargs+=(
+			-DVTK_WRAP_JAVA=ON
+			-DJAVA_AWT_INCLUDE_PATH=`java-config -O`/include
+			-DJAVA_INCLUDE_PATH:PATH=`java-config -O`/include
+			-DJAVA_INCLUDE_PATH2:PATH=`java-config -O`/include/linux)
+
+		if [ "${ARCH}" == "amd64" ]; then
+			mycmakeargs+=(-DJAVA_AWT_LIBRARY=`java-config -O`/jre/lib/${ARCH}/libjawt.so)
+		else
+			mycmakeargs+=(-DJAVA_AWT_LIBRARY:PATH=`java-config -O`/jre/lib/i386/libjawt.so)
+		fi
+	fi
+
+	if use python; then
+		mycmakeargs+=(
+			-DVTK_WRAP_PYTHON=ON
+			-DPYTHON_INCLUDE_PATH=$(python_get_includedir)
+			-DPYTHON_LIBRARY=$(python_get_library)
+			-DVTK_PYTHON_SETUP_ARGS:STRING=--root="${D}")
+	fi
+
+	if use qt4 ; then
+		mycmakeargs+=(
+			-DVTK_USE_GUISUPPORT=ON
+			-DVTK_USE_QVTK=ON
+			-DVTK_USE_QVTK_QTOPENGL=ON
+			-DQT_WRAP_CPP=ON
+			-DQT_WRAP_UI=ON
+			-DVTK_INSTALL_QT_DIR=/$(get_libdir)/qt4/plugins/${PN}
+			-DDESIRED_QT_VERSION=4
+			-DQT_MOC_EXECUTABLE="${EPREFIX}"/usr/bin/moc
+			-DQT_UIC_EXECUTABLE="${EPREFIX}"/usr/bin/uic
+			-DQT_INCLUDE_DIR="${EPREFIX}"/usr/include/qt4
+			-DQT_QMAKE_EXECUTABLE="${EPREFIX}"/usr/bin/qmake)
+	fi
+
+	cmake-utils_src_configure
+}
+
+src_install() {
+	cmake-utils_src_install
+
+	# install docs
+	dohtml "${S}"/README.html || die "Failed to install docs"
+
+	# install Tcl docs
+	docinto vtk_tcl
+	dodoc "${S}"/Wrapping/Tcl/README || \
+		die "Failed to install Tcl docs"
+
+	# install examples
+	if use examples; then
+		dodir /usr/share/${PN} || \
+			die "Failed to create data/examples directory"
+
+		cp -pPR "${S}"/Examples "${D}"/usr/share/${PN}/examples || \
+			die "Failed to copy example files"
+
+		# fix example's permissions
+		find "${D}"/usr/share/${PN}/examples -type d -exec \
+			chmod 0755 {} \; || \
+			die "Failed to fix example directories permissions"
+		find "${D}"/usr/share/${PN}/examples -type f -exec \
+			chmod 0644 {} \; || \
+			die "Failed to fix example files permissions"
+
+		cp -pPR "${WORKDIR}"/VTKData "${D}"/usr/share/${PN}/data || \
+			die "Failed to copy data files"
+
+		# fix data's permissions
+		find "${D}"/usr/share/${PN}/data -type d -exec \
+			chmod 0755 {} \; || \
+			die "Failed to fix data directories permissions"
+		find "${D}"/usr/share/${PN}/data -type f -exec \
+			chmod 0644 {} \; || \
+			die "Failed to fix data files permissions"
+	fi
+
+	#install big docs
+	if use doc; then
+		cd "${WORKDIR}"/html
+		rm -f *.md5 || die "Failed to remove superfluous hashes"
+		einfo "Installing API docs. This may take some time."
+		insinto "/usr/share/doc/${PF}/api-docs"
+		doins -r ./* || die "Failed to install docs"
+	fi
+
+	# environment
+	echo "VTK_DATA_ROOT=/usr/share/${PN}/data" >> "${T}"/40${PN}
+	echo "VTK_DIR=/usr/$(get_libdir)/${PN}-${SPV}" >> "${T}"/40${PN}
+	echo "VTKHOME=/usr" >> "${T}"/40${PN}
+	doenvd "${T}"/40${PN}
+}
+
+pkg_postinst() {
+	if use patented; then
+		ewarn "Using patented code in VTK may require a license."
+		ewarn "For more information, please read:"
+		ewarn "http://public.kitware.com/cgi-bin/vtkfaq?req=show&file=faq07.005.htp"
+	fi
+
+	if use python; then
+		python_mod_optimize vtk
+	fi
+}
+
+pkg_postrm() {
+	if use python; then
+		python_mod_cleanup vtk
+	fi
+}
author	Benda Xu <heroxbd@gentoo.org>	2012-05-18 17:36:48 +0900
committer	Benda Xu <heroxbd@gentoo.org>	2012-05-18 17:36:48 +0900
commit	fb26a5c2df5e1fde31491ebeff69112712008353 (patch)
tree	2f8414516404877c9df8e29df0c2b2536ab2bd5c /sci-libs
download	android-fb26a5c2df5e1fde31491ebeff69112712008353.tar.gz android-fb26a5c2df5e1fde31491ebeff69112712008353.tar.bz2 android-fb26a5c2df5e1fde31491ebeff69112712008353.zip