Add dvd95 for testing.

svn path=/; revision=294

11 files changed, 603 insertions, 0 deletions

diff --git a/app-cdr/dvd95/Manifest b/app-cdr/dvd95/Manifest
new file mode 100644
index 0000000..20f9705
--- /dev/null
+++ b/app-cdr/dvd95/Manifest
@@ -0,0 +1,4 @@
+AUX dvd95-1.3_p3-desktop-entry.patch 522 RMD160 2994f861bad84e3d5e7b38683d0e763fc0ffaf8d SHA1 8c087041ce7509f7d7041e8e69a772ac82b3362e SHA256 3ec7848b21c9ca64b5656aeed82a2c86c923225195ce6dfb624d5d6be12d9d7e
+DIST dvd95-1.5p3.tar.gz 1068766 RMD160 803e636c96811f6a9e523b4025fb4286a92ff8b2 SHA1 b317c79742111c3cc8c8e39a0292eb6d65e8fcef SHA256 4ef0ed1b122a3688c9ae0737d2658e148318334403fc1ee277b4ff9071ba5ea9
+EBUILD dvd95-1.5_p3.ebuild 1078 RMD160 6a9460870c84694b3dd22bfd32c570b8aada1688 SHA1 87f2b7c3531004f87eef1a3b0b7a434d1cf73d2c SHA256 93bfba95a728e8d9d24886ebc043eb477f96d9a53ea812efae9407d195e4c548
+MISC metadata.xml 166 RMD160 02ca0a5d9279c1b52c3887f5a1f52f3feb002af9 SHA1 b9fccc7c24aa717c30efef068fd544a692f264f6 SHA256 ce62d1e5b04e01d03a732ee6d33b3d500810de8e55af4a527c970e5b475735d8
diff --git a/app-cdr/dvd95/dvd95-1.5_p3.ebuild b/app-cdr/dvd95/dvd95-1.5_p3.ebuild
new file mode 100644
index 0000000..e5cf785
--- /dev/null
+++ b/app-cdr/dvd95/dvd95-1.5_p3.ebuild
@@ -0,0 +1,50 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $
+
+EAPI=2
+inherit eutils
+
+DESCRIPTION="DVD95 is a Gnome application to convert DVD9 to DVD5."
+HOMEPAGE="http://dvd95.sourceforge.net/"
+SRC_URI="mirror://sourceforge/dvd95/${P/_}.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+
+IUSE="3dnow nls mmx mpeg sse sse2"
+
+RDEPEND=">=gnome-base/libgnomeui-2
+	dev-libs/libxml2
+	media-libs/libdvdread
+	mpeg? ( media-libs/libmpeg2 )
+	media-video/mplayer"
+DEPEND="${RDEPEND}
+	dev-util/pkgconfig
+	nls? ( sys-devel/gettext
+		dev-util/intltool )
+	sys-apps/sed"
+
+S=${WORKDIR}/${P/_}
+
+src_prepare() {
+	epatch "${FILESDIR}"/${PN}-1.3_p3-desktop-entry.patch
+	sed -i -e "s:-O3:${CFLAGS}:" configure || die "sed failed"
+}
+
+src_configure() {
+	econf \
+		--disable-dependency-tracking \
+		$(use_enable nls) \
+		$(use_enable mmx) \
+		$(use_enable 3dnow) \
+		$(use_enable sse) \
+		$(use_enable sse2) \
+		$(use_enable mpeg libmpeg2)
+}
+
+src_install() {
+	emake DESTDIR="${D}" install || die "emake install failed"
+	dodoc AUTHORS ChangeLog
+}
diff --git a/app-cdr/dvd95/files/dvd95-1.3_p3-desktop-entry.patch b/app-cdr/dvd95/files/dvd95-1.3_p3-desktop-entry.patch
new file mode 100644
index 0000000..3bdfa30
--- /dev/null
+++ b/app-cdr/dvd95/files/dvd95-1.3_p3-desktop-entry.patch
@@ -0,0 +1,16 @@
+diff -ur dvd95-1.3p3.orig/dvd95.desktop dvd95-1.3p3/dvd95.desktop
+--- dvd95-1.3p3.orig/dvd95.desktop	2007-04-10 22:53:38.000000000 +0300
++++ dvd95-1.3p3/dvd95.desktop	2008-06-06 22:53:00.000000000 +0300
+@@ -3,10 +3,9 @@
+ Comment=DVD9 to DVD5 converter
+ Comment[fr]=Convertisseur DVD9 vers DVD5
+ Exec=dvd95
+-Icon=dvd95/dvd9548.png
++Icon=/usr/share/pixmaps/dvd95/dvd9548.png
+ Terminal=false
+ Type=Application
+-Encoding=UTF-8
+-Categories=Application;AudioVideo;
++Categories=AudioVideo;
+ X-Desktop-File-Install-Version=0.10
+ 
diff --git a/app-cdr/dvd95/metadata.xml b/app-cdr/dvd95/metadata.xml
new file mode 100644
index 0000000..3ca6ae7
--- /dev/null
+++ b/app-cdr/dvd95/metadata.xml
@@ -0,0 +1,5 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>media-optical</herd>
+</pkgmetadata>
diff --git a/sci-chemistry/jmol/Manifest b/sci-chemistry/jmol/Manifest
new file mode 100644
index 0000000..4ad5c1a
--- /dev/null
+++ b/sci-chemistry/jmol/Manifest
@@ -0,0 +1,7 @@
+AUX caffeine.xyz 1116 RMD160 92b432c6584cd927fa1bfb155ea41011ab7a82d8 SHA1 d0f35a447b333b8ea51c15ab0ac67d887556e43c SHA256 45a9afac0b247780595944a98f8e1076a7e7e0dbb3e02cb54cecb0764b1cb67f
+AUX index.html 328 RMD160 60d2a573c228e018a864fd7d9cfc7554264ccd6b SHA1 7ab256d768d3a4da43b5e497dfb1c3a53a8068a9 SHA256 8cba2c5eb7f25c0ecf23bc007eb61549a7d2177ac327db6c1e5f51f333ae2451
+AUX jmol-11.0.3-manifest.patch 3726 RMD160 03e1e11fdd29fb63de15934fff166348577084b0 SHA1 925a957bc30e1fbab9fd773dc07f83411f667d30 SHA256 74cdf274352161ffdf155b34b8d9110dad9c4a15720467f73d301104005566bd
+AUX jmol-11.4.6-nointl.patch 10695 RMD160 3d10af3e3c8debeb6680ab37e3e7fbf0cb871d4d SHA1 39f48d30de57e92f6399178a0605059eefda6373 SHA256 d34440c05b251e9392d9e4c85eceaeab9aaddac35be04e71781d95541252dc6f
+AUX selfSignedCertificate.store 1516 RMD160 583b7bab5578e1e32f649388b7009dc654df1199 SHA1 88d9123bdc1a376ba00e00c8abef4751adefe3a5 SHA256 81b69722530d94dc599ce79382a3386cce518baa7ab79fbb530d13483b51bed5
+DIST jmol-11.4.6-full.tar.gz 16022367 RMD160 281fc0886df82763545fde94c040f3011ad0e672 SHA1 b83df223bc6c1ecb64c9d3de0e6baca2882f07fa SHA256 c5c4dd6d28adf15c25f4a5f795578d3f25f245b40b3a2bb5dc09b3e2f30b048b
+EBUILD jmol-11.4.6.ebuild 3191 RMD160 f7a2d94379fa69d38053ee0ee0edc70398e83012 SHA1 93a0d72fe9f0e26edc0e6ea36fd6c1abd297b51a SHA256 767d3036f6e3ca0d1d37c3a08a2bee09f8fd938557dbecb438c15d9e4ebebd16
diff --git a/sci-chemistry/jmol/files/caffeine.xyz b/sci-chemistry/jmol/files/caffeine.xyz
new file mode 100644
index 0000000..f0325b0
--- /dev/null
+++ b/sci-chemistry/jmol/files/caffeine.xyz
@@ -0,0 +1,26 @@
+24
+Caffeine
+H      -3.3804130    -1.1272367     0.5733036
+N       0.9668296    -1.0737425    -0.8198227
+C       0.0567293     0.8527195     0.3923156
+N      -1.3751742    -1.0212243    -0.0570552
+C      -1.2615018     0.2590713     0.5234135
+C      -0.3068337    -1.6836331    -0.7169344
+C       1.1394235     0.1874122    -0.2700900
+N       0.5602627     2.0839095     0.8251589
+O      -0.4926797    -2.8180554    -1.2094732
+C      -2.6328073    -1.7303959    -0.0060953
+O      -2.2301338     0.7988624     1.0899730
+H       2.5496990     2.9734977     0.6229590
+C       2.0527432    -1.7360887    -1.4931279
+H      -2.4807715    -2.7269528     0.4882631
+H      -3.0089039    -1.9025254    -1.0498023
+H       2.9176101    -1.8481516    -0.7857866
+H       2.3787863    -1.1211917    -2.3743655
+H       1.7189877    -2.7489920    -1.8439205
+C      -0.1518450     3.0970046     1.5348347
+C       1.8934096     2.1181245     0.4193193
+N       2.2861252     0.9968439    -0.2440298
+H      -0.1687028     4.0436553     0.9301094
+H       0.3535322     3.2979060     2.5177747
+H      -1.2074498     2.7537592     1.7203047
diff --git a/sci-chemistry/jmol/files/index.html b/sci-chemistry/jmol/files/index.html
new file mode 100644
index 0000000..35a5d49
--- /dev/null
+++ b/sci-chemistry/jmol/files/index.html
@@ -0,0 +1,14 @@
+<html>
+  <head>
+    <title>Jmol Test Page</title>
+      <div align="center"> <b>All the Sugar and Twice the Caffeine.</b> <br><br>
+      <script src="./Jmol.js"></script>
+  </head>
+  <body>
+    <script>
+      jmolInitialize("./"); // REQUIRED
+      jmolApplet(400, "load ./caffeine.xyz");
+    </script></div>
+  </body>
+</html>
+
diff --git a/sci-chemistry/jmol/files/jmol-11.0.3-manifest.patch b/sci-chemistry/jmol/files/jmol-11.0.3-manifest.patch
new file mode 100644
index 0000000..3b43c21
--- /dev/null
+++ b/sci-chemistry/jmol/files/jmol-11.0.3-manifest.patch
@@ -0,0 +1,96 @@
+diff -aurN jmol-11.0.3-orig/manifest/applet0.txt jmol-11.0.3/manifest/applet0.txt
+--- jmol-11.0.3-orig/manifest/applet0.txt	1969-12-31 18:00:00.000000000 -0600
++++ jmol-11.0.3/manifest/applet0.txt	2007-05-16 01:54:10.000000000 -0500
+@@ -0,0 +1,6 @@
++Main-Class: JmolApplet

++Sealed: true

++

++Name: org/jmol/api/

++Sealed: false

++

+diff -aurN jmol-11.0.3-orig/manifest/applet1.txt jmol-11.0.3/manifest/applet1.txt
+--- jmol-11.0.3-orig/manifest/applet1.txt	1969-12-31 18:00:00.000000000 -0600
++++ jmol-11.0.3/manifest/applet1.txt	2007-05-16 01:54:10.000000000 -0500
+@@ -0,0 +1,6 @@
++Name: org/jmol/api/

++Sealed: false

++

++Name: org/jmol/applet/

++Sealed: true

++

+diff -aurN jmol-11.0.3-orig/manifest/applet2.txt jmol-11.0.3/manifest/applet2.txt
+--- jmol-11.0.3-orig/manifest/applet2.txt	1969-12-31 18:00:00.000000000 -0600
++++ jmol-11.0.3/manifest/applet2.txt	2007-05-16 01:56:19.000000000 -0500
+@@ -0,0 +1,3 @@
++Name: javax/vecmath/
++
++
+diff -aurN jmol-11.0.3-orig/manifest/applet3.txt jmol-11.0.3/manifest/applet3.txt
+--- jmol-11.0.3-orig/manifest/applet3.txt	1969-12-31 18:00:00.000000000 -0600
++++ jmol-11.0.3/manifest/applet3.txt	2007-05-16 01:56:47.000000000 -0500
+@@ -0,0 +1,4 @@
++
++Name: org/jmol/g3d/
++Sealed: true
++
+diff -aurN jmol-11.0.3-orig/manifest/applet4.txt jmol-11.0.3/manifest/applet4.txt
+--- jmol-11.0.3-orig/manifest/applet4.txt	1969-12-31 18:00:00.000000000 -0600
++++ jmol-11.0.3/manifest/applet4.txt	2007-05-16 01:57:05.000000000 -0500
+@@ -0,0 +1,4 @@
++
++Name: org/jmol/adapter/smarter/
++Sealed: true
++
+diff -aurN jmol-11.0.3-orig/manifest/applet5.txt jmol-11.0.3/manifest/applet5.txt
+--- jmol-11.0.3-orig/manifest/applet5.txt	1969-12-31 18:00:00.000000000 -0600
++++ jmol-11.0.3/manifest/applet5.txt	2007-05-16 01:57:23.000000000 -0500
+@@ -0,0 +1,4 @@
++Name: org/openscience/jmol/ui/
++Sealed: true
++
++
+diff -aurN jmol-11.0.3-orig/manifest/applet6.txt jmol-11.0.3/manifest/applet6.txt
+--- jmol-11.0.3-orig/manifest/applet6.txt	1969-12-31 18:00:00.000000000 -0600
++++ jmol-11.0.3/manifest/applet6.txt	2007-05-16 01:57:46.000000000 -0500
+@@ -0,0 +1,4 @@
++
++Name: org/jmol/viewer/
++Sealed: true
++
+diff -aurN jmol-11.0.3-orig/manifest/appletMain.txt jmol-11.0.3/manifest/appletMain.txt
+--- jmol-11.0.3-orig/manifest/appletMain.txt	1969-12-31 18:00:00.000000000 -0600
++++ jmol-11.0.3/manifest/appletMain.txt	2007-05-16 01:54:10.000000000 -0500
+@@ -0,0 +1,5 @@
++Manifest-Version: 1.0

++Sealed: true

++

++Name: org/jmol/api/

++Sealed: false

+diff -aurN jmol-11.0.3-orig/manifest/appletMonolithic.txt jmol-11.0.3/manifest/appletMonolithic.txt
+--- jmol-11.0.3-orig/manifest/appletMonolithic.txt	1969-12-31 18:00:00.000000000 -0600
++++ jmol-11.0.3/manifest/appletMonolithic.txt	2007-05-16 01:54:10.000000000 -0500
+@@ -0,0 +1,7 @@
++Main-Class: JmolApplet

++Sealed: true

++

++Name: org/jmol/api/

++Sealed: false

++

++

+diff -aurN jmol-11.0.3-orig/manifest/applet.txt jmol-11.0.3/manifest/applet.txt
+--- jmol-11.0.3-orig/manifest/applet.txt	1969-12-31 18:00:00.000000000 -0600
++++ jmol-11.0.3/manifest/applet.txt	2007-05-16 01:54:10.000000000 -0500
+@@ -0,0 +1,2 @@
++Manifest-Version: 1.0

++Sealed: true

+\ No newline at end of file
+diff -aurN jmol-11.0.3-orig/manifest/application.txt jmol-11.0.3/manifest/application.txt
+--- jmol-11.0.3-orig/manifest/application.txt	1969-12-31 18:00:00.000000000 -0600
++++ jmol-11.0.3/manifest/application.txt	2007-05-16 01:54:10.000000000 -0500
+@@ -0,0 +1 @@
++Main-Class: org.openscience.jmol.app.Jmol

+diff -aurN jmol-11.0.3-orig/manifest/jvxl.txt jmol-11.0.3/manifest/jvxl.txt
+--- jmol-11.0.3-orig/manifest/jvxl.txt	1969-12-31 18:00:00.000000000 -0600
++++ jmol-11.0.3/manifest/jvxl.txt	2007-05-16 01:54:10.000000000 -0500
+@@ -0,0 +1 @@
++Main-Class: org.openscience.jvxl.Jvxl

diff --git a/sci-chemistry/jmol/files/jmol-11.4.6-nointl.patch b/sci-chemistry/jmol/files/jmol-11.4.6-nointl.patch
new file mode 100644
index 0000000..252e236
--- /dev/null
+++ b/sci-chemistry/jmol/files/jmol-11.4.6-nointl.patch
@@ -0,0 +1,267 @@
+--- jmol-11.4.6/build.xml.orig	2008-09-16 15:27:28.388008850 -0500
++++ jmol-11.4.6/build.xml	2008-09-16 15:38:57.637384713 -0500
+@@ -104,10 +104,6 @@
+           <srcfiles dir="doc/source"
+                     includes="JmolGuide.docbook.xml, guide/*.docbook.xml"/>
+         </uptodate>
+-        <uptodate targetfile="build/doc/JmolUserGuide_fr/index.html">
+-          <srcfiles dir="doc/source"
+-                    includes="JmolGuide_fr.docbook.xml, guide/*_fr.docbook.xml"/>
+-        </uptodate>
+       </and>
+     </condition>
+ 
+@@ -117,14 +113,6 @@
+           <srcfiles dir="doc/source"
+                     includes="JmolHistory.xml,JmolHistoryToHtml.xsl,history/changes.xml" />
+         </uptodate>
+-        <uptodate targetfile="build/doc/JmolHistory/ChangeLog_fr.html">
+-          <srcfiles dir="doc/source"
+-                    includes="JmolHistory_fr.xml,JmolHistoryToHtml.xsl,history/changes_fr.xml" />
+-        </uptodate>
+-        <uptodate targetfile="build/doc/JmolHistory/ChangeLog_nl.html">
+-          <srcfiles dir="doc/source"
+-                    includes="JmolHistory_nl.xml,JmolHistoryToHtml.xsl,history/changes_nl.xml" />
+-        </uptodate>
+       </and>
+     </condition>
+     
+@@ -134,14 +122,6 @@
+           <srcfiles dir="doc/source"
+                     includes="JmolDevelopersGuide.docbook.xml"/>
+         </uptodate>
+-        <uptodate targetfile="build/doc/JmolDevelopersGuide_fr.html">
+-          <srcfiles dir="doc/source"
+-                    includes="JmolDevelopersGuide_fr.docbook.xml"/>
+-        </uptodate>
+-        <uptodate targetfile="build/doc/JmolDevelopersGuide_de.html">
+-          <srcfiles dir="doc/source"
+-                    includes="JmolDevelopersGuide_de.docbook.xml"/>
+-        </uptodate>
+       </and>
+     </condition>
+ 
+@@ -151,14 +131,6 @@
+           <srcfiles dir="doc/source"
+                     includes="JmolAppletGuide.docbook.xml, applet/*.docbook.xml"/>
+         </uptodate>
+-        <uptodate targetfile="build/doc/JmolAppletGuide_fr.html">
+-          <srcfiles dir="doc/source"
+-                    includes="JmolAppletGuide_fr.docbook.xml, applet/*_fr.docbook.xml"/>
+-        </uptodate>
+-        <uptodate targetfile="build/doc/JmolAppletGuide_de.html">
+-          <srcfiles dir="doc/source"
+-                    includes="JmolAppletGuide_de.docbook.xml"/>
+-        </uptodate>
+       </and>
+     </condition>
+ 
+@@ -350,17 +322,12 @@
+   </target>
+ 
+   <target name="jar" id="jar"
+-          depends="init,classes,jmolGuide,jmolHistory,jmolDevelopersGuide,libjars,main-i18n">
++          depends="init,classes,jmolGuide,jmolHistory,jmolDevelopersGuide,libjars">
+     <copy todir="${classes.dir}/org/openscience/jmol/Data/guide" >
+       <fileset dir="build/doc/JmolUserGuide">
+         <include name="**/*.html" />
+       </fileset>
+     </copy>
+-    <copy todir="${classes.dir}/org/openscience/jmol/Data/guide_fr" >
+-      <fileset dir="build/doc/JmolUserGuide_fr">
+-        <include name="**/*.html" />
+-      </fileset>
+-    </copy>
+     <copy todir="${classes.dir}/org/openscience/jmol/Data" >
+       <fileset dir="build/doc/JmolHistory">
+         <include name="**/*.html" />
+@@ -506,7 +473,6 @@
+ 	        <!-- note that this class is included in JmolApplet0.jar -->
+ 	        <exclude name="org/jmol/api/JmolAppletInterface.class" />
+ 	        <include name="org/jmol/applet/**" />
+-	        <include name="org/jmol/i18n/**" />
+ 	      </fileset>
+ 	    </jar>
+ 
+@@ -602,12 +568,6 @@
+ 	      </fileset>
+ 	    </jar>
+ 
+-	  <jar destfile="${jmol.applet.build.dir}/JmolApplet0_i18n.jar" manifest="manifest/applet_i18n.txt" >
+-      <fileset dir="${applet.classes.dir}">
+-        <include name="org/jmol/translation/**" />
+-      </fileset>
+-    </jar>
+-
+ 
+     <!-- vvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvv -->
+     <!-- changes to this must be replicated below for the signed applet -->
+@@ -636,7 +596,6 @@
+         <pathelement path="${jmol.applet.build.dir}/JmolApplet0_ShapeSpecial.jar" />
+         <pathelement path="${jmol.applet.build.dir}/JmolApplet0_Smiles.jar" />
+         <pathelement path="${jmol.applet.build.dir}/JmolApplet0_Viewer.jar" />
+-        <pathelement path="${jmol.applet.build.dir}/JmolApplet0_i18n.jar" />
+       </indexjars>
+     </jar>
+     <!-- changes to this must be replicated below for the signed applet -->
+@@ -728,11 +687,6 @@
+     	
+     	
+   	
+-  	<signjar jar="${jmol.applet.build.dir}/JmolApplet0_i18n.jar"
+-             signedjar="${jmol.applet.build.dir}/JmolAppletSigned0_i18n.jar"
+-             keystore="selfSignedCertificate/selfSignedCertificate.store"
+-             storepass="selfSignedCertificate" alias="selfSignedCertificate" />
+-
+     <!-- vvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvv -->
+     <!-- this one must be treated specially because of jar indexing
+          we cannot simply rename the jar file, because the index has
+@@ -762,7 +716,6 @@
+         <pathelement path="${jmol.applet.build.dir}/JmolAppletSigned0_ShapeSpecial.jar" />
+         <pathelement path="${jmol.applet.build.dir}/JmolAppletSigned0_Smiles.jar" />
+         <pathelement path="${jmol.applet.build.dir}/JmolAppletSigned0_Viewer.jar" />
+-        <pathelement path="${jmol.applet.build.dir}/JmolAppletSigned0_i18n.jar" />
+       </indexjars>
+     </jar>
+     <signjar jar="${jmol.applet.build.dir}/JmolAppletSigned0.jar"
+@@ -772,7 +725,7 @@
+   </target>
+ 
+   <target name="dist" id="dist"
+-          depends="doc,main-i18n,main,signed-applet">
++          depends="doc,main,signed-applet">
+     <!-- first build binary distribution -->
+     <delete dir="build/dist/jmol-${version}"/>
+     <mkdir dir="build/dist/jmol-${version}"/>
+@@ -829,7 +782,6 @@
+       <fileset dir=".">
+         <include name="applet.classes" />
+         <include name="build.xml" />
+-        <include name="build-i18n.xml" />
+       </fileset>
+     </copy>
+ 
+@@ -908,7 +860,6 @@
+       <fileset dir=".">
+         <include name="apisio.classes" />
+         <include name="build.xml" />
+-        <include name="build-i18n.xml" />
+       </fileset>
+     </copy>
+ 
+@@ -1000,7 +951,7 @@
+   <target name="xclean" id="xclean">
+   </target>
+ 
+-  <target name="spotless" id="spotless" depends="clean,spotless-i18n">
++  <target name="spotless" id="spotless" depends="clean">
+     <delete dir="build"/>
+     <delete dir="${javadoc.dir}"/>
+     <delete dir="packaging/rpm/dist"/>
+@@ -1063,16 +1014,6 @@
+       <arg value="../../../doc/source/JmolGuide.docbook.xml" />
+       <arg value="../../${docbook-xsl}/html/chunk.xsl" />
+     </java>
+-    <echo message="Generating user's guide (fr)" />
+-    <mkdir dir="build/doc/JmolUserGuide_fr" />
+-    <java fork="true" dir="build/doc/JmolUserGuide_fr"
+-          classname="com.icl.saxon.StyleSheet"
+-          classpath="${lib.dir}/saxon.jar" >
+-      <jvmarg value="${proxyHost}" />
+-      <jvmarg value="${proxyPort}" />
+-      <arg value="../../../doc/source/JmolGuide_fr.docbook.xml" />
+-      <arg value="../../${docbook-xsl}/html/chunk.xsl" />
+-    </java>
+   </target>
+ 
+   <target name="jmolHistory" id="jmolHistory"
+@@ -1087,26 +1028,6 @@
+       <arg value="../../../doc/source/JmolHistory.xml" />
+       <arg value="../../../doc/source/JmolHistoryToHtml.xsl" />
+     </java>
+-    <echo message="Generating history of changes (fr)" />
+-    <java fork="true" dir="build/doc/JmolHistory"
+-          classname="com.icl.saxon.StyleSheet"
+-          classpath="${lib.dir}/saxon.jar" >
+-      <arg value="-o" />
+-      <arg value="ChangeLog_fr.html" />
+-      <arg value="../../../doc/source/JmolHistory_fr.xml" />
+-      <arg value="../../../doc/source/JmolHistoryToHtml.xsl" />
+-      <arg value="lang=fr" />
+-    </java>
+-    <echo message="Generating history of changes (nl)" />
+-    <java fork="true" dir="build/doc/JmolHistory"
+-          classname="com.icl.saxon.StyleSheet"
+-          classpath="${lib.dir}/saxon.jar" >
+-      <arg value="-o" />
+-      <arg value="ChangeLog_nl.html" />
+-      <arg value="../../../doc/source/JmolHistory_nl.xml" />
+-      <arg value="../../../doc/source/JmolHistoryToHtml.xsl" />
+-      <arg value="lang=nl" />
+-    </java>
+   </target>
+ 
+   <target name="jmolDevelopersGuide" id="jmolDevelopersGuide"
+@@ -1120,24 +1041,6 @@
+       <arg value="../../doc/source/JmolDevelopersGuide.docbook.xml" />
+       <arg value="../${docbook-xsl}/html/docbook.xsl" />
+     </java>
+-    <echo message="Generating developer's guide (fr)" />
+-    <java fork="true" dir="build/doc"
+-          classname="com.icl.saxon.StyleSheet"
+-          classpath="${lib.dir}/saxon.jar" >
+-      <arg value="-o" />
+-      <arg value="JmolDevelopersGuide_fr.html" />
+-      <arg value="../../doc/source/JmolDevelopersGuide_fr.docbook.xml" />
+-      <arg value="../${docbook-xsl}/html/docbook.xsl" />
+-    </java>
+-    <echo message="Generating developer's guide (de)" />
+-    <java fork="true" dir="build/doc"
+-          classname="com.icl.saxon.StyleSheet"
+-          classpath="${lib.dir}/saxon.jar" >
+-      <arg value="-o" />
+-      <arg value="JmolDevelopersGuide_de.html" />
+-      <arg value="../../doc/source/JmolDevelopersGuide_de.docbook.xml" />
+-      <arg value="../${docbook-xsl}/html/docbook.xsl" />
+-    </java>
+   </target>
+ 
+   <target name="jmolAppletGuide" id="jmolAppletGuide" depends="initdoc"
+@@ -1151,24 +1054,6 @@
+       <arg value="../../doc/source/JmolAppletGuide.docbook.xml" />
+       <arg value="../${docbook-xsl}/html/docbook.xsl" />
+     </java>
+-    <echo message="Generating applet guide (fr)" />
+-    <java fork="true" dir="build/doc"
+-          classname="com.icl.saxon.StyleSheet"
+-          classpath="${lib.dir}/saxon.jar" >
+-      <arg value="-o" />
+-      <arg value="JmolAppletGuide_fr.html" />
+-      <arg value="../../doc/source/JmolAppletGuide_fr.docbook.xml" />
+-      <arg value="../${docbook-xsl}/html/docbook.xsl" />
+-    </java>
+-    <echo message="Generating applet guide (de)" />
+-    <java fork="true" dir="build/doc"
+-          classname="com.icl.saxon.StyleSheet"
+-          classpath="${lib.dir}/saxon.jar" >
+-      <arg value="-o" />
+-      <arg value="JmolAppletGuide_de.html" />
+-      <arg value="../../doc/source/JmolAppletGuide_de.docbook.xml" />
+-      <arg value="../${docbook-xsl}/html/docbook.xsl" />
+-    </java>
+   </target>
+ 
+   <target name="test" id="test" depends="main,compile-tests">
+@@ -1200,12 +1085,4 @@
+     <jar destfile="${tests.dir}/Tests.jar" basedir="${test-classes.dir}" />
+   </target>
+ 
+-  <!-- i18n stuff -->
+-  <target name="main-i18n" depends="classes">
+-    <ant antfile="build-i18n.xml" target="main-i18n"/>
+-  </target>
+-  <target name="spotless-i18n">
+-    <ant antfile="build-i18n.xml" target="spotless-i18n"/>
+-  </target>
+-
+ </project>
diff --git a/sci-chemistry/jmol/files/selfSignedCertificate.store b/sci-chemistry/jmol/files/selfSignedCertificate.store
new file mode 100644
index 0000000..a7b0ccb
--- /dev/null
+++ b/sci-chemistry/jmol/files/selfSignedCertificate.store
diff --git a/sci-chemistry/jmol/jmol-11.4.6.ebuild b/sci-chemistry/jmol/jmol-11.4.6.ebuild
new file mode 100644
index 0000000..4d988b2
--- /dev/null
+++ b/sci-chemistry/jmol/jmol-11.4.6.ebuild
@@ -0,0 +1,118 @@
+# Copyright 1999-2008 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+WEBAPP_OPTIONAL="yes"
+
+inherit eutils webapp java-pkg-2 java-ant-2
+
+DESCRIPTION="Jmol is a java molecular viever for 3-D chemical structures."
+SRC_URI="mirror://sourceforge/${PN}/${P}-full.tar.gz"
+HOMEPAGE="http://jmol.sourceforge.net/"
+KEYWORDS="~x86 ~amd64"
+LICENSE="LGPL-2.1"
+
+IUSE="client-only vhosts"
+
+WEBAPP_MANUAL_SLOT="yes"
+SLOT="0"
+
+COMMON_DEP="dev-java/commons-cli
+	dev-java/itext
+	sci-libs/jmol-acme
+	sci-libs/vecmath-objectclub"
+
+RDEPEND=">=virtual/jre-1.4
+	${COMMON_DEP}"
+DEPEND=">=virtual/jdk-1.4
+	!client-only? ( ${WEBAPP_DEPEND} )
+	${COMMON_DEP}"
+
+pkg_setup() {
+
+	if ! use client-only ; then
+		webapp_pkg_setup || die "Failed to setup webapp"
+	fi
+
+	java-pkg-2_pkg_setup
+
+}
+
+src_unpack() {
+
+	unpack ${A}
+	epatch "${FILESDIR}"/${P}-nointl.patch
+#	epatch "${FILESDIR}"/${P}-manifest.patch
+
+	mkdir "${S}"/selfSignedCertificate || die "Failed to create Cert directory."
+	cp "${FILESDIR}"/selfSignedCertificate.store "${S}"/selfSignedCertificate/ \
+		|| die "Failed to install Cert file."
+
+	rm -v "${S}"/*.jar "${S}"/plugin-jars/*.jar || die
+	cd "${S}/jars"
+
+# We still have to use netscape.jar on amd64 until a nice way to include plugin.jar comes along.
+	if use amd64; then
+		mv -v netscape.jar netscape.tempjar || die "Failed to move netscape.jar."
+		rm -v *.jar *.tar.gz || die "Failed to remove jars."
+		mv -v netscape.tempjar netscape.jar || die "Failed to move netscape.tempjar."
+	fi
+
+	java-pkg_jar-from vecmath-objectclub vecmath-objectclub.jar vecmath1.2-1.14.jar
+	java-pkg_jar-from itext iText.jar itext-1.4.5.jar
+	java-pkg_jar-from jmol-acme jmol-acme.jar Acme.jar
+	java-pkg_jar-from commons-cli-1 commons-cli.jar commons-cli-1.0.jar
+
+	mkdir -p "${S}/build/appjars" || die
+}
+
+src_compile() {
+	# prevent absorbing dep's classes
+	eant -Dlibjars.uptodate=true main
+}
+
+src_install() {
+
+	java-pkg_dojar build/Jmol.jar
+	dohtml -r  build/doc/* || die "Failed to install html docs."
+	dodoc *.txt doc/*license* || die "Failed to install licenses."
+
+	java-pkg_dolauncher ${PN} --main org.openscience.jmol.app.Jmol \
+		--java_args "-Xmx512m"
+
+	if ! use client-only ; then
+		webapp_src_preinst || die "Failed webapp_src_preinst."
+		cmd="cp Jmol.js build/Jmol.jar "${D}${MY_HTDOCSDIR}"" ; ${cmd} \
+		|| die "${cmd} failed."
+		cmd="cp build/JmolApplet*.jar "${D}${MY_HTDOCSDIR}"" ; ${cmd} \
+		|| die "${cmd} failed."
+		cmd="cp applet.classes "${D}${MY_HTDOCSDIR}"" ; ${cmd} \
+		|| die "${cmd} failed."
+		cmd="cp -r build/classes/* "${D}${MY_HTDOCSDIR}"" ; ${cmd} \
+		|| die "${cmd} failed."
+		cmd="cp -r build/appletjars/* "${D}${MY_HTDOCSDIR}"" ; ${cmd} \
+		|| die "${cmd} failed."
+		cmd="cp "${FILESDIR}"/caffeine.xyz "${D}${MY_HTDOCSDIR}"" ; ${cmd} \
+		|| die "${cmd} failed."
+		cmd="cp "${FILESDIR}"/index.html "${D}${MY_HTDOCSDIR}"" ; ${cmd} \
+		|| die "${cmd} failed."
+
+		webapp_src_install || die "Failed running webapp_src_install"
+	fi
+}
+
+pkg_postinst() {
+
+	if ! use client-only ; then
+		webapp_pkg_postinst || die "webapp_pkg_postinst failed"
+	fi
+
+}
+
+pkg_prerm() {
+
+	if ! use client-only ; then
+		webapp_pkg_prerm || die "webapp_pkg_prerm failed"
+	fi
+
+}