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authorDonnie Berkholz <dberkholz@gentoo.org>2008-07-06 23:10:49 -0700
committerDonnie Berkholz <dberkholz@gentoo.org>2008-07-06 23:10:49 -0700
commitabfd918f96da1c264cf1e343196517bca24b0816 (patch)
treed6ec4b532fde339fea9cdab4a83675b9752c512b /sci-physics
parentpymol: 1.1 is in science overlay. (diff)
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abinit: merged to gentoo-x86.
Diffstat (limited to 'sci-physics')
-rw-r--r--sci-physics/abinit/ChangeLog42
-rw-r--r--sci-physics/abinit/Manifest7
-rw-r--r--sci-physics/abinit/abinit-5.4.4.ebuild98
-rw-r--r--sci-physics/abinit/files/5.2.3-change-default-directories.patch24
-rw-r--r--sci-physics/abinit/files/5.2.3-fix-64bit-detection.patch12
-rw-r--r--sci-physics/abinit/files/5.3.4-change-default-directories.patch34
-rw-r--r--sci-physics/abinit/files/digest-abinit-5.3.43
-rw-r--r--sci-physics/abinit/metadata.xml9
8 files changed, 0 insertions, 229 deletions
diff --git a/sci-physics/abinit/ChangeLog b/sci-physics/abinit/ChangeLog
deleted file mode 100644
index 5950641..0000000
--- a/sci-physics/abinit/ChangeLog
+++ /dev/null
@@ -1,42 +0,0 @@
-# ChangeLog for sci-physics/abinit
-# Copyright 1999-2006 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-physics/abinit/ChangeLog,v 1.6 2006/10/18 05:08:42 dberkholz Exp $
-
- 18 Oct 2006; Donnie Berkholz <dberkholz@gentoo.org>;
- -files/fix-64bit-detection.patch,
- -files/5.1.3-fix-blas-lapack-check.patch,
- -files/change-default-directories.patch, -files/fix-test-tarball.patch,
- -abinit-5.1.3.ebuild:
- Pull old version.
-
-*abinit-5.2.3 (18 Oct 2006)
-
- 18 Oct 2006; Donnie Berkholz <dberkholz@gentoo.org>;
- +files/5.2.3-fix-64bit-detection.patch,
- +files/5.2.3-change-default-directories.patch, +abinit-5.2.3.ebuild:
- Bump. This is the first release in the 5.x series officially considered
- ready for production use.
-
- 07 Jul 2006; Donnie Berkholz <dberkholz@gentoo.org>; metadata.xml:
- Update to my new email address.
-
- 02 Jul 2006; Luis Medinas <metalgod@gentoo.org> metadata.xml:
- Update metadata to sci-physics.
-
- 02 Jul 2006; Luis Medinas <metalgod@gentoo.org>
- +files/fix-64bit-detection.patch,
- +files/5.1.3-fix-blas-lapack-check.patch,
- +files/change-default-directories.patch, +files/fix-test-tarball.patch,
- +metadata.xml, +abinit-5.1.3.ebuild:
- Moved from sci-chemistry/abinit to sci-physics/abinit.
-
-*abinit-5.1.3 (04 Jun 2006)
-
- 04 Jun 2006; Donnie Berkholz <dberkholz@gentoo.org>;
- +files/fix-64bit-detection.patch,
- +files/5.1.3-fix-blas-lapack-check.patch,
- +files/change-default-directories.patch, +files/fix-test-tarball.patch,
- +metadata.xml, +abinit-5.1.3.ebuild:
- New package for ab initio calculations using density functional theory.
- Requires gcc 4.1 to build, which is why I haven't added it until now.
-
diff --git a/sci-physics/abinit/Manifest b/sci-physics/abinit/Manifest
deleted file mode 100644
index 6afaba3..0000000
--- a/sci-physics/abinit/Manifest
+++ /dev/null
@@ -1,7 +0,0 @@
-AUX 5.2.3-change-default-directories.patch 1042 RMD160 451b0495104b3b889512cfc0eef2295674d26cfc SHA1 c498b6eaa7e90e5c4964036b49f8c3f15666b9e5 SHA256 2acb1cad4e02f3f5e1fde47cfebc51013da69b96e3da88abd5bd8c3ebde61d70
-AUX 5.2.3-fix-64bit-detection.patch 492 RMD160 286765a4fb7b06afd9f829799ad9cd9811711d32 SHA1 dc1c2691212da8b0e62407f0cfb82a83740deb86 SHA256 414be70962e0bdaffc51f9aacce5f5e171e046d7aeacf26d2706961c02501138
-AUX 5.3.4-change-default-directories.patch 1550 RMD160 02abf8695d4a12b0d47b96f86fedb05f65f0fde8 SHA1 03c6200cbe0458040cd3f7af42a28515b4c17b57 SHA256 3d493ed6f49924c248694d0de5aa0c66ac693b4ce5c6b3ce892471c9b2d7fbf7
-DIST abinit-5.4.4.tar.gz 33830853 RMD160 2b4859ef616f416c31a4bd99118010665952588e SHA1 8b6aed103990cd97b7c06a2f1554370bb43146fd SHA256 9f8edc734a5285fccd92e9f93ade465348f54f9b31ba682614f4f4ae13fcd0b5
-EBUILD abinit-5.4.4.ebuild 2304 RMD160 00ed3a73da87296718f710f431620d9087c2e001 SHA1 3ced1488bde1edaec16a1360368b16daa18bd3b2 SHA256 ddd377376f127c1e07eea96b147d85e1df290b9c2ee7cbb25608cd5ffb4bbf4f
-MISC ChangeLog 1694 RMD160 3a4c84d59313427a920f339a3d97b3778f7cc304 SHA1 7708fce193031dc4b35cff0322c5734cbe52e866 SHA256 b2cb60f0a592ce4f53627dae53b1b331004d24c87d9f13bbf0f5669fa297e41e
-MISC metadata.xml 256 RMD160 c1dd75e3f77bae7a5bd165e4d4592520e5f9f3ed SHA1 d0bd0c0728a0932c75ba6ee62a3610b0e948ddcf SHA256 1a34797175a4f62913c4dee4631b5141b08ddab164776021e52167239e16e1d8
diff --git a/sci-physics/abinit/abinit-5.4.4.ebuild b/sci-physics/abinit/abinit-5.4.4.ebuild
deleted file mode 100644
index 4197a47..0000000
--- a/sci-physics/abinit/abinit-5.4.4.ebuild
+++ /dev/null
@@ -1,98 +0,0 @@
-# Copyright 1999-2006 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-physics/abinit/abinit-5.2.3.ebuild,v 1.1 2006/10/18 04:55:28 dberkholz Exp $
-
-inherit fortran toolchain-funcs
-
-DESCRIPTION="Find total energy, charge density and electronic structure using density functional theory"
-HOMEPAGE="http://www.abinit.org/"
-SRC_URI="ftp://ftp.abinit.org/pub/abinitio/ABINIT_v${PV}/${P}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~ppc ~x86"
-IUSE="mpi test"
-
-RDEPEND="virtual/blas
- virtual/lapack"
-DEPEND="${RDEPEND}"
-
-# F90 code, g77 won't work
-FORTRAN="gfortran ifc"
-
-pkg_setup() {
- fortran_pkg_setup
-
- # Doesn't compile with gcc-4.0, only >=4.1
- local diemsg="Requires gcc-4.1 or newer"
- if [[ "${FORTRANC}" = "gfortran" ]]; then
- if [[ $(gcc-major-version) -eq 4 ]] \
- && [[ $(gcc-minor-version) -lt 1 ]]; then
- die "${diemsg}"
- fi
- fi
-}
-
-src_unpack() {
- unpack ${A}
- cd "${S}"
- epatch "${FILESDIR}"/5.3.4-change-default-directories.patch
- epatch "${FILESDIR}"/5.2.3-fix-64bit-detection.patch
-
- # Yea for breaking compatibility with no ChangeLog entry in 2.60
- if has_version '>=sys-devel/autoconf-2.60'; then
- sed -i -e "s:_AC_SRCPATHS:_AC_SRCDIRS:g" config/m4/init.m4
- fi
-
- AT_M4DIR="config/m4" eautoreconf
-}
-
-src_compile() {
- econf \
- --with-install-type=debian \
- --disable-config-file \
- --disable-library-search \
- $(use_enable mpi) \
- --with-blas-prefix=/usr \
- --with-lapack-prefix=/usr \
- --with-c-optflags="${CFLAGS}" \
- --with-fortran-optflags="${FFLAGS}" \
- --with-fortran-ldflags='-lpthread' \
- FC="${FORTRANC}" \
- CC="$(tc-getCC)" \
- || die "configure failed"
-
- emake || die "make failed"
-}
-
-src_test() {
- einfo "The tests take quite a while, on the order of 2-3 hours"
- einfo "on a dual Athlon 2000+."
- cd "${S}"/tests
- emake tests_dev
-
- local REPORT
- for REPORT in $(find . -name *fl*); do
- elog "Results for ${REPORT%%/*} tests"
- while read line; do
- elog "${line}"
- done \
- < <(cat ${REPORT} )
- done
-}
-
-src_install() {
- emake DESTDIR="${D}" install || die "install failed"
-
- if use test; then
- dodoc tests/summary_tests.tar.gz
- fi
-
- dodoc KNOWN_PROBLEMS README
-}
-
-pkg_postinst() {
- if use test; then
- elog "The test results will be installed as summary_tests.tar.gz."
- fi
-}
diff --git a/sci-physics/abinit/files/5.2.3-change-default-directories.patch b/sci-physics/abinit/files/5.2.3-change-default-directories.patch
deleted file mode 100644
index e535066..0000000
--- a/sci-physics/abinit/files/5.2.3-change-default-directories.patch
+++ /dev/null
@@ -1,24 +0,0 @@
-diff -urN abinit-5.2.3.orig/config/m4/init.m4 abinit-5.2.3/config/m4/init.m4
---- abinit-5.2.3.orig/config/m4/init.m4 2006-10-17 21:09:23.000000000 -0700
-+++ abinit-5.2.3/config/m4/init.m4 2006-10-17 21:09:12.000000000 -0700
-@@ -197,9 +197,9 @@
-
- debian)
- abinit_prefix="/usr"
-- abinit_bindir="/usr/lib/abinit/${ABINIT_VERSION_BASE}/bin"
-+ abinit_bindir="/usr/bin"
- abinit_datdir="/usr/share/abinit"
-- abinit_docdir="/usr/share/doc/abinit/${ABINIT_VERSION_BASE}"
-+ abinit_docdir="/usr/share/doc/abinit-${ABINIT_VERSION_BASE}"
- abinit_libdir="/usr/lib/abinit/${ABINIT_VERSION_BASE}/lib"
- abinit_incdir="/usr/include/abinit/${ABINIT_VERSION_BASE}"
- abinit_mandir="/usr/share/man"
-@@ -299,7 +299,7 @@
- fi
- ABINIT_VERSION_BUILD=`date '+%Y%m%d'`
-
-- ABINIT_VERSION_BASE="${ABINIT_VERSION_MAJOR}.${ABINIT_VERSION_MINOR}"
-+ ABINIT_VERSION_BASE="${ABINIT_VERSION_MAJOR}.${ABINIT_VERSION_MINOR}.${ABINIT_VERSION_MICRO}"
-
- dnl Make numbers available to source files
- AC_DEFINE_UNQUOTED(ABINIT_VERSION,"${ABINIT_VERSION}",
diff --git a/sci-physics/abinit/files/5.2.3-fix-64bit-detection.patch b/sci-physics/abinit/files/5.2.3-fix-64bit-detection.patch
deleted file mode 100644
index baa6d38..0000000
--- a/sci-physics/abinit/files/5.2.3-fix-64bit-detection.patch
+++ /dev/null
@@ -1,12 +0,0 @@
-diff -urN abinit-5.2.3.orig/config/m4/init.m4 abinit-5.2.3/config/m4/init.m4
---- abinit-5.2.3.orig/config/m4/init.m4 2006-10-17 21:05:17.000000000 -0700
-+++ abinit-5.2.3/config/m4/init.m4 2006-10-17 21:07:10.000000000 -0700
-@@ -39,7 +39,7 @@
- alpha*|powerpc*)
- abi_cpu_model="${target_cpu}"
- abi_cpu_64bits=`echo "${abi_cpu_model}" | grep '64$'`
-- if test abi_cpu_64bits = ""; then
-+ if test "${abi_cpu_64bits}" = ""; then
- abi_cpu_64bits="no"
- abi_cpu_bits="32"
- else
diff --git a/sci-physics/abinit/files/5.3.4-change-default-directories.patch b/sci-physics/abinit/files/5.3.4-change-default-directories.patch
deleted file mode 100644
index 1bbbd15..0000000
--- a/sci-physics/abinit/files/5.3.4-change-default-directories.patch
+++ /dev/null
@@ -1,34 +0,0 @@
-diff -urN abinit-5.3.4.orig/config/m4/init.m4 abinit-5.3.4/config/m4/init.m4
---- abinit-5.3.4.orig/config/m4/init.m4 2007-05-08 23:23:04.000000000 -0700
-+++ abinit-5.3.4/config/m4/init.m4 2007-05-08 23:25:19.000000000 -0700
-@@ -207,14 +207,14 @@
- fi
-
- dnl Set-up all directory names
-- abinit_bindir="${abinit_prefix}/abinit/${ABINIT_VERSION_BASE}/bin"
-- abinit_chkdir="${abinit_prefix}/abinit/${ABINIT_VERSION_BASE}/tests"
-+ abinit_bindir="${abinit_prefix}/bin"
-+ abinit_chkdir="${abinit_prefix}/share/abinit/tests"
- abinit_datdir="${abinit_prefix}/abinit"
-- abinit_docdir="${abinit_prefix}/abinit/${ABINIT_VERSION_BASE}/doc"
-- abinit_incdir="${abinit_prefix}/abinit/${ABINIT_VERSION_BASE}/include"
-- abinit_libdir="${abinit_prefix}/abinit/${ABINIT_VERSION_BASE}/lib"
-- abinit_mandir="${abinit_prefix}/abinit/man"
-- abinit_rundir="${abinit_prefix}/abinit/bin"
-+ abinit_docdir="${abinit_prefix}/share/doc/abinit-${ABINIT_VERSION_BASE}"
-+ abinit_incdir="${abinit_prefix}/include"
-+ abinit_libdir="${abinit_prefix}/lib"
-+ abinit_mandir="${abinit_prefix}/share/man/man"
-+ abinit_rundir="${abinit_prefix}/bin"
- abinit_wwwdir="${abinit_prefix}/abinit/${ABINIT_VERSION_BASE}/www"
-
- dnl Substitute all variables
-@@ -288,7 +288,7 @@
- fi
- ABINIT_VERSION_BUILD=`date '+%Y%m%d'`
-
-- ABINIT_VERSION_BASE="${ABINIT_VERSION_MAJOR}.${ABINIT_VERSION_MINOR}"
-+ ABINIT_VERSION_BASE="${ABINIT_VERSION_MAJOR}.${ABINIT_VERSION_MINOR}.${ABINIT_VERSION_MICRO}"
-
- dnl Make numbers available to source files
- AC_DEFINE_UNQUOTED(ABINIT_VERSION,"${ABINIT_VERSION}",
diff --git a/sci-physics/abinit/files/digest-abinit-5.3.4 b/sci-physics/abinit/files/digest-abinit-5.3.4
deleted file mode 100644
index 1c975d2..0000000
--- a/sci-physics/abinit/files/digest-abinit-5.3.4
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 29597bf246d42a3c12c38c3b66aa62a5 abinit-5.3.4.tar.gz 28292542
-RMD160 7a4bf36e755d56ab8b85f0a609b847c582ff38c9 abinit-5.3.4.tar.gz 28292542
-SHA256 5f173483d798c99687d3706f110a98c7d4d8639e4222e7e3fb628d7cc6bf9ea1 abinit-5.3.4.tar.gz 28292542
diff --git a/sci-physics/abinit/metadata.xml b/sci-physics/abinit/metadata.xml
deleted file mode 100644
index 56668dc..0000000
--- a/sci-physics/abinit/metadata.xml
+++ /dev/null
@@ -1,9 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>sci-physics</herd>
-<maintainer>
-<email>dberkholz@gentoo.org</email>
-<name>Donnie Berkholz</name>
-</maintainer>
-</pkgmetadata>