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author | 2008-07-06 23:10:49 -0700 | |
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committer | 2008-07-06 23:10:49 -0700 | |
commit | abfd918f96da1c264cf1e343196517bca24b0816 (patch) | |
tree | d6ec4b532fde339fea9cdab4a83675b9752c512b /sci-physics | |
parent | pymol: 1.1 is in science overlay. (diff) | |
download | dberkholz-abfd918f96da1c264cf1e343196517bca24b0816.tar.gz dberkholz-abfd918f96da1c264cf1e343196517bca24b0816.tar.bz2 dberkholz-abfd918f96da1c264cf1e343196517bca24b0816.zip |
abinit: merged to gentoo-x86.
Diffstat (limited to 'sci-physics')
-rw-r--r-- | sci-physics/abinit/ChangeLog | 42 | ||||
-rw-r--r-- | sci-physics/abinit/Manifest | 7 | ||||
-rw-r--r-- | sci-physics/abinit/abinit-5.4.4.ebuild | 98 | ||||
-rw-r--r-- | sci-physics/abinit/files/5.2.3-change-default-directories.patch | 24 | ||||
-rw-r--r-- | sci-physics/abinit/files/5.2.3-fix-64bit-detection.patch | 12 | ||||
-rw-r--r-- | sci-physics/abinit/files/5.3.4-change-default-directories.patch | 34 | ||||
-rw-r--r-- | sci-physics/abinit/files/digest-abinit-5.3.4 | 3 | ||||
-rw-r--r-- | sci-physics/abinit/metadata.xml | 9 |
8 files changed, 0 insertions, 229 deletions
diff --git a/sci-physics/abinit/ChangeLog b/sci-physics/abinit/ChangeLog deleted file mode 100644 index 5950641..0000000 --- a/sci-physics/abinit/ChangeLog +++ /dev/null @@ -1,42 +0,0 @@ -# ChangeLog for sci-physics/abinit -# Copyright 1999-2006 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-physics/abinit/ChangeLog,v 1.6 2006/10/18 05:08:42 dberkholz Exp $ - - 18 Oct 2006; Donnie Berkholz <dberkholz@gentoo.org>; - -files/fix-64bit-detection.patch, - -files/5.1.3-fix-blas-lapack-check.patch, - -files/change-default-directories.patch, -files/fix-test-tarball.patch, - -abinit-5.1.3.ebuild: - Pull old version. - -*abinit-5.2.3 (18 Oct 2006) - - 18 Oct 2006; Donnie Berkholz <dberkholz@gentoo.org>; - +files/5.2.3-fix-64bit-detection.patch, - +files/5.2.3-change-default-directories.patch, +abinit-5.2.3.ebuild: - Bump. This is the first release in the 5.x series officially considered - ready for production use. - - 07 Jul 2006; Donnie Berkholz <dberkholz@gentoo.org>; metadata.xml: - Update to my new email address. - - 02 Jul 2006; Luis Medinas <metalgod@gentoo.org> metadata.xml: - Update metadata to sci-physics. - - 02 Jul 2006; Luis Medinas <metalgod@gentoo.org> - +files/fix-64bit-detection.patch, - +files/5.1.3-fix-blas-lapack-check.patch, - +files/change-default-directories.patch, +files/fix-test-tarball.patch, - +metadata.xml, +abinit-5.1.3.ebuild: - Moved from sci-chemistry/abinit to sci-physics/abinit. - -*abinit-5.1.3 (04 Jun 2006) - - 04 Jun 2006; Donnie Berkholz <dberkholz@gentoo.org>; - +files/fix-64bit-detection.patch, - +files/5.1.3-fix-blas-lapack-check.patch, - +files/change-default-directories.patch, +files/fix-test-tarball.patch, - +metadata.xml, +abinit-5.1.3.ebuild: - New package for ab initio calculations using density functional theory. - Requires gcc 4.1 to build, which is why I haven't added it until now. - diff --git a/sci-physics/abinit/Manifest b/sci-physics/abinit/Manifest deleted file mode 100644 index 6afaba3..0000000 --- a/sci-physics/abinit/Manifest +++ /dev/null @@ -1,7 +0,0 @@ -AUX 5.2.3-change-default-directories.patch 1042 RMD160 451b0495104b3b889512cfc0eef2295674d26cfc SHA1 c498b6eaa7e90e5c4964036b49f8c3f15666b9e5 SHA256 2acb1cad4e02f3f5e1fde47cfebc51013da69b96e3da88abd5bd8c3ebde61d70 -AUX 5.2.3-fix-64bit-detection.patch 492 RMD160 286765a4fb7b06afd9f829799ad9cd9811711d32 SHA1 dc1c2691212da8b0e62407f0cfb82a83740deb86 SHA256 414be70962e0bdaffc51f9aacce5f5e171e046d7aeacf26d2706961c02501138 -AUX 5.3.4-change-default-directories.patch 1550 RMD160 02abf8695d4a12b0d47b96f86fedb05f65f0fde8 SHA1 03c6200cbe0458040cd3f7af42a28515b4c17b57 SHA256 3d493ed6f49924c248694d0de5aa0c66ac693b4ce5c6b3ce892471c9b2d7fbf7 -DIST abinit-5.4.4.tar.gz 33830853 RMD160 2b4859ef616f416c31a4bd99118010665952588e SHA1 8b6aed103990cd97b7c06a2f1554370bb43146fd SHA256 9f8edc734a5285fccd92e9f93ade465348f54f9b31ba682614f4f4ae13fcd0b5 -EBUILD abinit-5.4.4.ebuild 2304 RMD160 00ed3a73da87296718f710f431620d9087c2e001 SHA1 3ced1488bde1edaec16a1360368b16daa18bd3b2 SHA256 ddd377376f127c1e07eea96b147d85e1df290b9c2ee7cbb25608cd5ffb4bbf4f -MISC ChangeLog 1694 RMD160 3a4c84d59313427a920f339a3d97b3778f7cc304 SHA1 7708fce193031dc4b35cff0322c5734cbe52e866 SHA256 b2cb60f0a592ce4f53627dae53b1b331004d24c87d9f13bbf0f5669fa297e41e -MISC metadata.xml 256 RMD160 c1dd75e3f77bae7a5bd165e4d4592520e5f9f3ed SHA1 d0bd0c0728a0932c75ba6ee62a3610b0e948ddcf SHA256 1a34797175a4f62913c4dee4631b5141b08ddab164776021e52167239e16e1d8 diff --git a/sci-physics/abinit/abinit-5.4.4.ebuild b/sci-physics/abinit/abinit-5.4.4.ebuild deleted file mode 100644 index 4197a47..0000000 --- a/sci-physics/abinit/abinit-5.4.4.ebuild +++ /dev/null @@ -1,98 +0,0 @@ -# Copyright 1999-2006 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-physics/abinit/abinit-5.2.3.ebuild,v 1.1 2006/10/18 04:55:28 dberkholz Exp $ - -inherit fortran toolchain-funcs - -DESCRIPTION="Find total energy, charge density and electronic structure using density functional theory" -HOMEPAGE="http://www.abinit.org/" -SRC_URI="ftp://ftp.abinit.org/pub/abinitio/ABINIT_v${PV}/${P}.tar.gz" - -LICENSE="GPL-2" -SLOT="0" -KEYWORDS="~amd64 ~ppc ~x86" -IUSE="mpi test" - -RDEPEND="virtual/blas - virtual/lapack" -DEPEND="${RDEPEND}" - -# F90 code, g77 won't work -FORTRAN="gfortran ifc" - -pkg_setup() { - fortran_pkg_setup - - # Doesn't compile with gcc-4.0, only >=4.1 - local diemsg="Requires gcc-4.1 or newer" - if [[ "${FORTRANC}" = "gfortran" ]]; then - if [[ $(gcc-major-version) -eq 4 ]] \ - && [[ $(gcc-minor-version) -lt 1 ]]; then - die "${diemsg}" - fi - fi -} - -src_unpack() { - unpack ${A} - cd "${S}" - epatch "${FILESDIR}"/5.3.4-change-default-directories.patch - epatch "${FILESDIR}"/5.2.3-fix-64bit-detection.patch - - # Yea for breaking compatibility with no ChangeLog entry in 2.60 - if has_version '>=sys-devel/autoconf-2.60'; then - sed -i -e "s:_AC_SRCPATHS:_AC_SRCDIRS:g" config/m4/init.m4 - fi - - AT_M4DIR="config/m4" eautoreconf -} - -src_compile() { - econf \ - --with-install-type=debian \ - --disable-config-file \ - --disable-library-search \ - $(use_enable mpi) \ - --with-blas-prefix=/usr \ - --with-lapack-prefix=/usr \ - --with-c-optflags="${CFLAGS}" \ - --with-fortran-optflags="${FFLAGS}" \ - --with-fortran-ldflags='-lpthread' \ - FC="${FORTRANC}" \ - CC="$(tc-getCC)" \ - || die "configure failed" - - emake || die "make failed" -} - -src_test() { - einfo "The tests take quite a while, on the order of 2-3 hours" - einfo "on a dual Athlon 2000+." - cd "${S}"/tests - emake tests_dev - - local REPORT - for REPORT in $(find . -name *fl*); do - elog "Results for ${REPORT%%/*} tests" - while read line; do - elog "${line}" - done \ - < <(cat ${REPORT} ) - done -} - -src_install() { - emake DESTDIR="${D}" install || die "install failed" - - if use test; then - dodoc tests/summary_tests.tar.gz - fi - - dodoc KNOWN_PROBLEMS README -} - -pkg_postinst() { - if use test; then - elog "The test results will be installed as summary_tests.tar.gz." - fi -} diff --git a/sci-physics/abinit/files/5.2.3-change-default-directories.patch b/sci-physics/abinit/files/5.2.3-change-default-directories.patch deleted file mode 100644 index e535066..0000000 --- a/sci-physics/abinit/files/5.2.3-change-default-directories.patch +++ /dev/null @@ -1,24 +0,0 @@ -diff -urN abinit-5.2.3.orig/config/m4/init.m4 abinit-5.2.3/config/m4/init.m4 ---- abinit-5.2.3.orig/config/m4/init.m4 2006-10-17 21:09:23.000000000 -0700 -+++ abinit-5.2.3/config/m4/init.m4 2006-10-17 21:09:12.000000000 -0700 -@@ -197,9 +197,9 @@ - - debian) - abinit_prefix="/usr" -- abinit_bindir="/usr/lib/abinit/${ABINIT_VERSION_BASE}/bin" -+ abinit_bindir="/usr/bin" - abinit_datdir="/usr/share/abinit" -- abinit_docdir="/usr/share/doc/abinit/${ABINIT_VERSION_BASE}" -+ abinit_docdir="/usr/share/doc/abinit-${ABINIT_VERSION_BASE}" - abinit_libdir="/usr/lib/abinit/${ABINIT_VERSION_BASE}/lib" - abinit_incdir="/usr/include/abinit/${ABINIT_VERSION_BASE}" - abinit_mandir="/usr/share/man" -@@ -299,7 +299,7 @@ - fi - ABINIT_VERSION_BUILD=`date '+%Y%m%d'` - -- ABINIT_VERSION_BASE="${ABINIT_VERSION_MAJOR}.${ABINIT_VERSION_MINOR}" -+ ABINIT_VERSION_BASE="${ABINIT_VERSION_MAJOR}.${ABINIT_VERSION_MINOR}.${ABINIT_VERSION_MICRO}" - - dnl Make numbers available to source files - AC_DEFINE_UNQUOTED(ABINIT_VERSION,"${ABINIT_VERSION}", diff --git a/sci-physics/abinit/files/5.2.3-fix-64bit-detection.patch b/sci-physics/abinit/files/5.2.3-fix-64bit-detection.patch deleted file mode 100644 index baa6d38..0000000 --- a/sci-physics/abinit/files/5.2.3-fix-64bit-detection.patch +++ /dev/null @@ -1,12 +0,0 @@ -diff -urN abinit-5.2.3.orig/config/m4/init.m4 abinit-5.2.3/config/m4/init.m4 ---- abinit-5.2.3.orig/config/m4/init.m4 2006-10-17 21:05:17.000000000 -0700 -+++ abinit-5.2.3/config/m4/init.m4 2006-10-17 21:07:10.000000000 -0700 -@@ -39,7 +39,7 @@ - alpha*|powerpc*) - abi_cpu_model="${target_cpu}" - abi_cpu_64bits=`echo "${abi_cpu_model}" | grep '64$'` -- if test abi_cpu_64bits = ""; then -+ if test "${abi_cpu_64bits}" = ""; then - abi_cpu_64bits="no" - abi_cpu_bits="32" - else diff --git a/sci-physics/abinit/files/5.3.4-change-default-directories.patch b/sci-physics/abinit/files/5.3.4-change-default-directories.patch deleted file mode 100644 index 1bbbd15..0000000 --- a/sci-physics/abinit/files/5.3.4-change-default-directories.patch +++ /dev/null @@ -1,34 +0,0 @@ -diff -urN abinit-5.3.4.orig/config/m4/init.m4 abinit-5.3.4/config/m4/init.m4 ---- abinit-5.3.4.orig/config/m4/init.m4 2007-05-08 23:23:04.000000000 -0700 -+++ abinit-5.3.4/config/m4/init.m4 2007-05-08 23:25:19.000000000 -0700 -@@ -207,14 +207,14 @@ - fi - - dnl Set-up all directory names -- abinit_bindir="${abinit_prefix}/abinit/${ABINIT_VERSION_BASE}/bin" -- abinit_chkdir="${abinit_prefix}/abinit/${ABINIT_VERSION_BASE}/tests" -+ abinit_bindir="${abinit_prefix}/bin" -+ abinit_chkdir="${abinit_prefix}/share/abinit/tests" - abinit_datdir="${abinit_prefix}/abinit" -- abinit_docdir="${abinit_prefix}/abinit/${ABINIT_VERSION_BASE}/doc" -- abinit_incdir="${abinit_prefix}/abinit/${ABINIT_VERSION_BASE}/include" -- abinit_libdir="${abinit_prefix}/abinit/${ABINIT_VERSION_BASE}/lib" -- abinit_mandir="${abinit_prefix}/abinit/man" -- abinit_rundir="${abinit_prefix}/abinit/bin" -+ abinit_docdir="${abinit_prefix}/share/doc/abinit-${ABINIT_VERSION_BASE}" -+ abinit_incdir="${abinit_prefix}/include" -+ abinit_libdir="${abinit_prefix}/lib" -+ abinit_mandir="${abinit_prefix}/share/man/man" -+ abinit_rundir="${abinit_prefix}/bin" - abinit_wwwdir="${abinit_prefix}/abinit/${ABINIT_VERSION_BASE}/www" - - dnl Substitute all variables -@@ -288,7 +288,7 @@ - fi - ABINIT_VERSION_BUILD=`date '+%Y%m%d'` - -- ABINIT_VERSION_BASE="${ABINIT_VERSION_MAJOR}.${ABINIT_VERSION_MINOR}" -+ ABINIT_VERSION_BASE="${ABINIT_VERSION_MAJOR}.${ABINIT_VERSION_MINOR}.${ABINIT_VERSION_MICRO}" - - dnl Make numbers available to source files - AC_DEFINE_UNQUOTED(ABINIT_VERSION,"${ABINIT_VERSION}", diff --git a/sci-physics/abinit/files/digest-abinit-5.3.4 b/sci-physics/abinit/files/digest-abinit-5.3.4 deleted file mode 100644 index 1c975d2..0000000 --- a/sci-physics/abinit/files/digest-abinit-5.3.4 +++ /dev/null @@ -1,3 +0,0 @@ -MD5 29597bf246d42a3c12c38c3b66aa62a5 abinit-5.3.4.tar.gz 28292542 -RMD160 7a4bf36e755d56ab8b85f0a609b847c582ff38c9 abinit-5.3.4.tar.gz 28292542 -SHA256 5f173483d798c99687d3706f110a98c7d4d8639e4222e7e3fb628d7cc6bf9ea1 abinit-5.3.4.tar.gz 28292542 diff --git a/sci-physics/abinit/metadata.xml b/sci-physics/abinit/metadata.xml deleted file mode 100644 index 56668dc..0000000 --- a/sci-physics/abinit/metadata.xml +++ /dev/null @@ -1,9 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> -<herd>sci-physics</herd> -<maintainer> -<email>dberkholz@gentoo.org</email> -<name>Donnie Berkholz</name> -</maintainer> -</pkgmetadata> |