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# Copyright 1999-2013 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/aria-2.3.2-r5.ebuild,v 1.2 2013/05/29 16:14:45 jlec Exp $
EAPI=5
PYTHON_COMPAT=( python{2_6,2_7} )
PYTHON_REQ_USE="tk"
inherit base eutils python-single-r1 versionator
MY_P="${PN}$(get_version_component_range 1-2 ${PV})"
DATE="03.25.2013"
DESCRIPTION="Automated NOE assignment and NMR structure calculation"
HOMEPAGE="http://aria.pasteur.fr/"
SRC_URI="http://aria.pasteur.fr/archives/${MY_P}.2_${DATE}.tar.gz"
SLOT="0"
LICENSE="cns"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE="examples"
REQUIRED_USE="${PYTHON_REQUIRED_USE}"
RDEPEND="
${PYTHON_DEPS}
dev-tcltk/tix
dev-lang/tk
dev-python/numpy[${PYTHON_USEDEP}]
dev-python/matplotlib[${PYTHON_USEDEP},tk]
>=sci-chemistry/cns-1.2.1-r7[aria,openmp]
>=sci-chemistry/ccpn-2.2[${PYTHON_USEDEP}]
sci-chemistry/clashlist
sci-chemistry/procheck
sci-libs/clashscore-db"
DEPEND="${RDEPEND}"
RESTRICT="fetch"
S="${WORKDIR}/${MY_P}"
pkg_nofetch(){
einfo "Go to http://aria.pasteur.fr/archives/aria2.3.2.tar.gz/view, download ${A}"
einfo "and place it in ${DISTDIR}"
}
pkg_setup() {
python-single-r1_pkg_setup
}
src_test(){
export CCPNMR_TOP_DIR=$(python_get_sitedir)
export PYTHONPATH=.:${CCPNMR_TOP_DIR}/ccpn/python
${PYTHON} check.py || die
}
src_install(){
python_moduleinto ${PN}
python_domodule src aria2.py
python_moduleinto ${PN}/cns
python_domodule cns/{protocols,toppar,src/helplib}
if use examples; then
insinto /usr/share/${P}/
doins -r examples
fi
# ENV
cat >> "${T}"/20aria <<- EOF
ARIA2="$(python_get_sitedir)/${PN}"
EOF
doenvd "${T}"/20aria
# Launch Wrapper
cat >> "${T}"/aria <<- EOF
#!/bin/sh
export CCPNMR_TOP_DIR="$(python_get_sitedir)"
export PYTHONPATH="$(python_get_sitedir)/ccpn/python"
exec "${PYTHON}" -O "\${ARIA2}"/aria2.py \$@
EOF
dobin "${T}"/aria
dosym aria /usr/bin/aria2
dodoc README
python_optimize "${D}/$(python_get_sitedir)"
}
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