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# Copyright 1999-2007 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.4.ebuild,v 1.4 2007/11/24 15:10:04 markusle Exp $
inherit flag-o-matic
DESCRIPTION="Vienna RNA Package - RNA secondary structure prediction and comparison"
HOMEPAGE="http://www.tbi.univie.ac.at/~ivo/RNA/"
SRC_URI="http://www.tbi.univie.ac.at/~ivo/RNA/ViennaRNA-${PV}.tar.gz"
LICENSE="vienna-rna"
SLOT=0
KEYWORDS="x86 ~ppc"
IUSE="no-utils no-readseq perl"
DEPEND="perl? ( dev-lang/perl )
!no-utils? ( dev-lang/perl )"
S="${WORKDIR}/ViennaRNA-${PV}"
src_compile() {
sed -i -e 's:/usr/local/bin/perl:/usr/bin/perl:' Perl/RNAfold.pl || die
sed -i -e 's:/usr/local/bin/perl:/usr/bin/perl:' Utils/ct2b.pl || die
sed -i -e 's:/usr/local/bin/perl:/usr/bin/perl:' Utils/b2mt.pl || die
sed -i -e 's:/usr/local/bin/perl:/usr/bin/perl:' Utils/dpzoom.pl || die
sed -i -e 's:/usr/local/bin/perl:/usr/bin/perl:' Utils/mountain.pl || die
append-flags -I../H
make -e library programs gammel subopt || die
use perl && make -e perl || die
use no-utils || make -e util || die
use no-readseq || cd Readseq && make -e || die
}
src_install() {
insinto /usr/include/vienna-rna
doins H/*
dolib.a lib/libRNA.a
dobin Cluster/{AnalyseDists,AnalyseSeqs}
dobin Progs/RNA{distance,eval,fold,heat,inverse,pdist}
dobin Subopt/{RNAsubopt,popt}
dodoc CHANGES CREDITS README
doinfo man/RNAlib.info
newman man/AnalyseDists.man AnalyseDists.man.1
newman man/AnalyseSeqs.man AnalyseSeqs.man.1
newman man/RNAdistance.man RNAdistance.man.1
newman man/RNAeval.man RNAeval.man.1
newman man/RNAfold.man RNAfold.man.1
newman man/RNAheat.man RNAheat.man.1
newman man/RNAinverse.man RNAinverse.man.1
newman man/RNApdist.man RNApdist.man.1
newman Subopt/RNAsubopt.man RNAsubopt.man.1
dohtml man/RNAlib.html
insinto /usr/share/doc/${P}/pdf
doins man/RNAlib.pdf
if use perl; then
cd Perl
make install DESTDIR="${D}" || die
dodoc RNA_wrap.doc
cd "${S}"
fi
if ! use no-utils; then
dobin Utils/{b2ct,ct2b.pl,dpzoom.pl,mountain.pl,b2mt.pl,Fold,RNAplot}
newdoc Utils/README README.utils
newman Utils/RNAplot.man RNAplot.man.1
fi
if ! use no-readseq; then
newbin Readseq/readseq readseq-vienna
newdoc Readseq/Readme README.readseq
newdoc Readseq/Formats FORMATS.readseq
newdoc Readseq/README README.readseq-vienna
fi
}
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