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# Copyright 1999-2012 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-8.69.ebuild,v 1.6 2012/12/11 14:39:22 jlec Exp $
EAPI="2"
inherit eutils flag-o-matic toolchain-funcs
DESCRIPTION="A multiple sequence alignment package"
HOMEPAGE="http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html"
SRC_URI="http://www.tcoffee.org/Packages/T-COFFEE_distribution_Version_${PV}.tar.gz"
LICENSE="GPL-2"
SLOT="0"
IUSE="examples test"
KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux"
RDEPEND="sci-biology/clustalw"
DEPEND="${DEPEND}
test? ( dev-lang/perl )"
S="${WORKDIR}/T-COFFEE_distribution_Version_${PV}"
die_compile() {
echo
eerror "If you experience an internal compiler error (consult the above"
eerror "messages), try compiling t-coffee using very modest compiler flags."
eerror "See bug #114745 on the Gentoo Bugzilla for more details."
die "Compilation failed"
}
src_prepare() {
epatch "${FILESDIR}"/${PV}-flags.patch
epatch "${FILESDIR}"/${PV}-test.patch
}
src_compile() {
[[ $(gcc-version) == "3.4" ]] && append-flags -fno-unit-at-a-time
[[ $(gcc-version) == "4.1" ]] && append-flags -fno-unit-at-a-time
emake \
CC="$(tc-getCC)" CFLAGS="${CFLAGS}" \
-C t_coffee_source || die_compile
}
src_test() {
cd "${TCDIR}"
perl bin/test.pl || die
}
src_install() {
dobin t_coffee_source/t_coffee || die "Failed to install program."
insinto /usr/share/${PN}/lib/html
doins html/* || die "Failed to install Web interface files."
# cd IR}"/doc
dodoc doc/*.txt || die "Failed to install text documentation."
dohtml doc/*.htm || die "Failed to install HTML documentation."
insinto /usr/share/doc/${PF}
doins doc/*.doc || die "Failed to install DOC documentation."
if use examples; then
insinto /usr/share/${PN}
doins -r example || die "Failed to install example files."
fi
}
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