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# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/seaview-4.2.5.ebuild,v 1.2 2010/07/16 09:36:01 fauli Exp $
EAPI="2"
inherit toolchain-funcs multilib eutils base
DESCRIPTION="A graphical multiple sequence alignment editor"
HOMEPAGE="http://pbil.univ-lyon1.fr/software/seaview.html"
SRC_URI="ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/${PN}_${PV}.tar.gz"
LICENSE="public-domain"
SLOT="0"
KEYWORDS="~amd64 x86"
IUSE="+pdf +xft"
DEPEND="x11-libs/fltk:1.1
pdf? ( media-libs/pdflib )
xft? ( x11-libs/libXft
x11-libs/fltk:1.1[xft] )"
RDEPEND="${DEPEND}
sci-biology/clustalw
|| ( sci-libs/libmuscle sci-biology/muscle )
sci-biology/phyml"
S="${WORKDIR}/${PN}"
src_prepare() {
# respect CXXFLAGS (package uses them as CFLAGS)
sed -i \
-e "s:^CXX.*:CXX = $(tc-getCXX):" \
-e "s:\$(OPT):${CXXFLAGS}:" \
-e "s:^OPT:#OPT:" \
-e "s:^#IFLTK .*:IFLTK = $(fltk-config --use-images --cxxflags):" \
-e "s:^#LFLTK .*:LFLTK = $(fltk-config --use-images --ldflags):" \
-e "s:^USE_XFT:#USE_XFT:" \
-e "s:^#HELPFILE:HELPFILE:" \
-e "s:^#PHYMLNAME:PHYMLNAME:" \
Makefile || die "sed failed while editing Makefile"
if use pdf; then
sed -i \
-e "s:PDF_PS_FLAGS = -DNO_PDF:#PDF_PS_FLAGS = -DNO_PDF:" \
-e "s:PDF_PS = postscript:#PDF_PS = postscript:" \
-e "s:#PDF_INC = \$(HOME)/PDFlibLite:PDF_INC = /usr/include:" \
-e "s:#PDF_LIB = \$(HOME)/PDFlibLite:PDF_LIB = /usr/lib:" \
-e "s:#PDF_PS = pdf:PDF_PS = pdf:" \
-e "s:#PDF_PS_FLAGS = -I\$(PDF_INC):PDF_PS_FLAGS = -I\$(PDF_INC):" \
-e "s:#LPDF = -L\$(PDF_LIB) -lpdf:LPDF = -L\$(PDF_LIB) -lpdf:" \
Makefile || die "sed failed while editing Makefile to enable pdf output"
fi
if use xft; then
sed -i \
-e "s:^#USE_XFT .*:USE_XFT = -DUSE_XFT $(xft-config --cflags):" \
-e "s:-lXft:$(xft-config --libs):" \
Makefile || die "sed failed while editing Makefile to enable xft"
else
sed -i -e "s:-lXft::" Makefile || die
fi
base_src_prepare
}
src_install() {
dobin seaview || die
# /usr/share/seaview/seaview.html is hardcoded in the binary, see Makefile
insinto /usr/share/seaview
doins example.nxs seaview.html
insinto /usr/share/seaview/images
doins seaview.xpm || die
make_desktop_entry seaview Seaview
doman seaview.1 || die
}
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