1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
|
# ChangeLog for sci-biology/ncbi-tools
# Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ChangeLog,v 1.37 2006/01/21 18:03:06 ribosome Exp $
21 Jan 2006; Olivier Fisette <ribosome@gentoo.org>
-ncbi-tools-20050605-r1.ebuild:
Removed buggy version.
*ncbi-tools-20050605-r2 (14 Dec 2005)
14 Dec 2005; Olivier Fisette <ribosome@gentoo.org>
+ncbi-tools-20050605-r2.ebuild:
Fixed file collisions with "dev-libs/libpcre" (bug #115463).
16 Nov 2005; Olivier Fisette <ribosome@gentoo.org>
ncbi-tools-20050605-r1.ebuild:
Readded ~sparc (closes bug #111807).
15 Nov 2005; Fernando J. Pereda <ferdy@gentoo.org>
ncbi-tools-20050605-r1.ebuild:
re-add ~alpha wrt bug #111807
*ncbi-tools-20050605-r1 (15 Nov 2005)
15 Nov 2005; Olivier Fisette <ribosome@gentoo.org>
+ncbi-tools-20050605-r1.ebuild:
Added MPI support for the BLAST family of programs. Thanks to Brady
Catherman <bradyc@uidaho.edu> for his work (fixes bug #111807).
09 Nov 2005; Jason Wever <weeve@gentoo.org> ncbi-tools-20050605.ebuild:
Stable on SPARC wrt bug #108334.
22 Oct 2005; Olivier Fisette <ribosome@gentoo.org> -files/21ncbi,
-ncbi-tools-20041020-r1.ebuild, -ncbi-tools-20050429.ebuild:
Pruning old versions.
22 Oct 2005; Fabian Groffen <grobian@gentoo.org>
ncbi-tools-20050605.ebuild:
Marked ppc-macos per bug #108334
18 Oct 2005; Aron Griffis <agriffis@gentoo.org>
ncbi-tools-20050605.ebuild:
Mark 20050605 stable on alpha
12 Oct 2005; Michael Hanselmann <hansmi@gentoo.org>
ncbi-tools-20050605.ebuild:
Stable on ppc.
11 Oct 2005; Luis Medinas <metalgod@gentoo.org>
ncbi-tools-20050605.ebuild:
Marked Stable on amd64
09 Oct 2005; Mark Loeser <halcy0n@gentoo.org> ncbi-tools-20050605.ebuild:
Stable on x86
07 Oct 2005; Brent Baude <ranger@gentoo.org> ncbi-tools-20050605.ebuild:
Marking ncbi-tools-200506 ppc64 stable for bug 108334
19 Sep 2005; Olivier Fisette <ribosome@gentoo.org> metadata.xml:
Maintainer changed from Stephen Diener (MIA) to Olivier Fisette.
16 Sep 2005; Aron Griffis <agriffis@gentoo.org>
ncbi-tools-20050429.ebuild:
Mark 20050429 stable on alpha
19 Aug 2005; Michael Hanselmann <hansmi@gentoo.org>
ncbi-tools-20050429.ebuild:
Removed from ppc (xlc not available).
09 Aug 2005; Brent Baude <ranger@gentoo.org>
+files/ncbi-tools-20050605-lop.patch,
-files/ncbi-tools-20050605-lop.patch.gz, ncbi-tools-20050605.ebuild:
For the ebuild ncbi-tools-20050605, I was asked to remove the gz patch and
submit it as plain text. This commit will remove the gz patch and replace it
with a plain text one. The patch name change is also reflected in the
ebuild.
08 Aug 2005; Brent Baude <ranger@gentoo.org>
+files/ncbi-tools-20050605-lop.patch.gz, ncbi-tools-20050605.ebuild:
Added patch for 20050506 which when ppc64, will patch the makefile to use
gcc instead of the default xlc (IBM compiler) which doesnt exist on gentoo.
08 Aug 2005; Brent Baude <ranger@gentoo.org> ncbi-tools-20050429.ebuild:
ncbi-tools-20050429.ebuild does not compile on ppc64; will fix later ebuild
*ncbi-tools-20050605 (06 Aug 2005)
06 Aug 2005; Olivier Fisette <ribosome@gentoo.org>
-ncbi-tools-20040616.ebuild, ncbi-tools-20050429.ebuild,
+ncbi-tools-20050605.ebuild:
New version. Added 20050429 to x86. Removed old version.
09 Jun 2005; Markus Rothe <corsair@gentoo.org>
ncbi-tools-20041020-r1.ebuild:
Stable on ppc64
02 Jun 2005; Olivier Fisette <ribosome@gentoo.org> ChangeLog:
Use "virtual/motif" instead of "x11-libs/openmotif".
16 May 2005; Olivier Fisette <ribosome@gentoo.org>
ncbi-tools-20050429.ebuild:
Fixed CFLAGS not being applied properly (bug #92564).
*ncbi-tools-20050429 (13 May 2005)
13 May 2005; Olivier Fisette <ribosome@gentoo.org>
+ncbi-tools-20050429.ebuild:
New version.
29 Apr 2005; Markus Rothe <corsair@gentoo.org>
ncbi-tools-20041020-r1.ebuild:
Added ~ppc64 to KEYWORDS
24 Apr 2005; Michael Hanselmann <hansmi@gentoo.org>
ncbi-tools-20041020-r1.ebuild:
Stable on ppc.
*ncbi-tools-20041020-r1 (06 Mar 2005)
06 Mar 2005; Olivier Fisette <ribosome@gentoo.org> +files/21ncbi-r1,
+ncbi-tools-20041020-r1.ebuild, -ncbi-tools-20041020.ebuild:
Added the "BLASTMAT" environment variable to the env.d file.
02 Mar 2005; Lina Pezzella <j4rg0n@gentoo.org> ncbi-tools-20041020.ebuild:
Stable ppc-macos
01 Mar 2005; Olivier Fisette <ribosome@gentoo.org>
ncbi-tools-20041020.ebuild:
Added to x86.
02 Feb 2005; Lina Pezzella <j4rg0n@gentoo.org> ncbi-tools-20040616.ebuild:
Stable ppc-macos
30 Jan 2005; Olivier Fisette <ribosome@gentoo.org>
ncbi-tools-20041020.ebuild:
Ebuild cleanup.
*ncbi-tools-20041020 (18 Jan 2005)
18 Jan 2005; Olivier Fisette <ribosome@gentoo.org>
+ncbi-tools-20041020.ebuild:
New version.
02 Jan 2005; Olivier Fisette <ribosome@gentoo.org> :
Added to x86. Use toolchain-funcs rather than gcc eclass.
29 Dec 2004; Ciaran McCreesh <ciaranm@gentoo.org> :
Change encoding to UTF-8 for GLEP 31 compliance
*ncbi-tools-20040616 (23 Dec 2004)
23 Dec 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml,
+files/21ncbi, +files/ncbirc, +ncbi-tools-20040616.ebuild:
Moved from app-sci/ncbi-tools to sci-biology/ncbi-tools.
30 Nov 2004; <j4rg0n@gentoo.org> ncbi-tools-20040616.ebuild:
Keyworded ~ppc-macos.
22 Nov 2004; Karol Wojtaszek <sekretarz@gentoo.org>
ncbi-tools-20040616.ebuild:
Added to ~amd64
14 Oct 2004; Olivier Fisette <ribosome@gentoo.org>
ncbi-tools-20040616.ebuild:
Use gcc-getCC from gcc.eclass rather than ${CC}.
04 Oct 2004; Olivier Fisette <ribosome@gentoo.org>
ncbi-tools-20040616.ebuild:
Fixed potential bug in "SRC_URI".
*ncbi-tools-20040616 (03 Oct 2004)
03 Oct 2004; Olivier Fisette <ribosome@gentoo.org> files/21ncbi,
-files/dot-ncbirc, +files/ncbirc, -ncbi-tools-20031103.ebuild,
-ncbi-tools-20040202-r1.ebuild, +ncbi-tools-20040616.ebuild:
Updated version and new ebuild. This fixes bug #65941.
02 Jun 2004; Aron Griffis <agriffis@gentoo.org> ncbi-tools-20031103.ebuild,
ncbi-tools-20040202-r1.ebuild:
Fix use invocation
05 May 2004; Bryan Østergaard <kloeri@gentoo.org>
ncbi-tools-20040202-r1.ebuild:
Stable on alpha.
19 Apr 2004; Patrick Kursawe <phosphan@gentoo.org>
ncbi-tools-04222003-r2.ebuild, ncbi-tools-20030422.ebuild,
ncbi-tools-20031103.ebuild, ncbi-tools-20040202-r1.ebuild,
ncbi-tools-20040202.ebuild:
Cleanup, removing S=... with no effect
30 Mar 2004; Donnie Berkholz <spyderous@gentoo.org>;
ncbi-tools-04222003-r2.ebuild, ncbi-tools-20030422.ebuild,
ncbi-tools-20031103.ebuild, ncbi-tools-20040202-r1.ebuild,
ncbi-tools-20040202.ebuild:
Change x11-base/xfree dependency to virtual/x11.
21 Mar 2004; Martin Holzer <mholzer@gentoo.org>
ncbi-tools-04222003-r2.ebuild, ncbi-tools-20030422.ebuild,
ncbi-tools-20031103.ebuild, ncbi-tools-20040202-r1.ebuild,
ncbi-tools-20040202.ebuild:
adding categorie. see 45110 for details
*ncbi-tools-20040202-r1 (06 Feb 2004)
06 Feb 2004; Stephen Diener <sediener@gentoo.org>
ncbi-tools-20040202-r1.ebuild:
Replaced buggy tarball with new one. Bumped revision to propogate.
*ncbi-tools-20040202 (05 Feb 2004)
05 Feb 2004; Stephen Diener <sediener@gentoo.org>
ncbi-tools-04222003-r1.ebuild, ncbi-tools-04222003.ebuild,
ncbi-tools-20030422.ebuild, ncbi-tools-20031103.ebuild,
ncbi-tools-20040202.ebuild:
Bumped 20031103 to x86, removed old ebuilds, added new release 20040202
*ncbi-tools-20040202 (04 Feb 2004)
04 Feb 2004; Stephen Diener <sediener@gentoo.org>
ncbi-tools-20031103.ebuild, ncbi-tools-20040202.ebuild:
Version bump. Changes -O3 -> -O2 so X11 apps will work.
11 Jan 2004; Heinrich Wendel <lanius@gentoo.org>
ncbi-tools-04222003-r1.ebuild, ncbi-tools-04222003-r2.ebuild,
ncbi-tools-20030422.ebuild, ncbi-tools-20031103.ebuild:
fixed motif dep
*ncbi-tools-20031103 (13 Dec 2003)
13 Dec 2003; Stephen Diener <sediener@gentoo.org>
ncbi-tools-20031103.ebuild:
Added november release of ncbi-tools (blast-2.2.6 included);
Added support for -X
*ncbi-tools-20030422 (11 Nov 2003)
11 Nov 2003; <sediener@gentoo.org> ncbi-tools-20030422.ebuild:
added bl2seq to list of installed binaries; changed date format from 04222003
to 20030422; renamed files to have date appended to not collide and changed
SRC_URI to mirror://gentoo/
*ncbi-tools-04222003-r2 (08 Oct 2003)
08 Oct 2003; Robin H. Johnson <robbat2@gentoo.org>
ncbi-tools-04222003-r2.ebuild:
modified patch from #30656, corrected two pathes in the postinst message
*ncbi-tools-04222003-r1 (05 May 2003)
05 May 2003; Jon Portnoy <avenj@gentoo.org> ncbi-tools-04222003-r1.ebuild :
A few enhancements from Gontran Zepeda <gontran@gontran.net>.
*ncbi-tools-04222003 (03 May 2003)
03 May 2003; Jon Portnoy <avenj@gentoo.org> ncbi-tools-04222003 :
Initial important. Ebuild submitted by Steve Diener
<sediener@unity.ncsu.edu>.
|
GitWeb