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# Copyright 1999-2004 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/generic-genome-browser/generic-genome-browser-1.58.ebuild,v 1.2 2004/12/23 22:50:05 ribosome Exp $
inherit perl-module
CATEGORY="sci-biology"
MY_PN="Generic-Genome-Browser"
MY_P="${MY_PN}-${PV}"
DESCRIPTION="The generic genome browser provides a display of genomic annotations on interactive web pages"
HOMEPAGE="http://www.gmod.org"
SRC_URI="mirror://sourceforge/gmod/${MY_P}.tar.gz"
LICENSE="Artistic"
SLOT="0"
KEYWORDS="~x86 ~ppc"
IUSE="mysql gd"
S="${WORKDIR}/${MY_P}"
DEPEND="
>=sci-biology/bioperl-1.4
>=dev-perl/CGI-2.56
>=dev-perl/GD-2.07
dev-perl/DBI
dev-perl/Digest-MD5
dev-perl/Text-Shellwords
dev-perl/libwww-perl
dev-perl/XML-Parser
dev-perl/XML-Writer
dev-perl/XML-Twig
dev-perl/XML-DOM
dev-perl/Bio-Das
gd? (
dev-perl/GD-SVG
)
mysql?
(
>=dev-db/mysql-4
dev-perl/DBD-mysql
)
>=net-www/apache-2.0.47"
RDEPEND="${DEPEND}"
src_compile() {
cd ${S}
# ewarn "Modifying Makefile.PL to avoid sandbox violation"
sed -e "s:WriteMakefile(:WriteMakefile(\n 'PREFIX'=>'${D}/usr',\n'INSTALLDIRS' => 'vendor',:" -i Makefile.PL
perl Makefile.PL \
HTDOCS=/var/www/localhost/htdocs \
CGIBIN=/var/www/localhost/cgi-bin \
CONF=/etc \
PREFIX=/var/www/localhost \
DESTDIR=${D} \
INSTALLDIRS=vendor
#perl-module_src_compile || die "Make failed"
perl-module_src_test || die "Test Failed"
}
src_install() {
dodir /etc
dodir /var/www/localhost/htdocs
dodir /var/www/localhost/cgi-bin
mydoc="History README TODO INSTALL"
dodir /usr/share/${PF}/tutorial
cd ${S}/docs/tutorial
tar cf - ./ | ( cd ${D}/usr/share/${PF}/scripts; tar xf -)
cd ${S}
sed -e "s:my \$dir = \":my \$dir = \"${D}/:" -i install_util/conf_install.PLS
sed -e "s:my \$ht_target = \":my \$ht_target = \"${D}/:" -i install_util/htdocs_install.PLS
sed -e "s:my \$cgi_target = :my \$cgi_target = \"${D}\"\.:" -i install_util/cgi_install.PLS
perl-module_src_install
}
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