sci-biology/abyss/abyss-1.1.1.ebuild


1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25

# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/abyss-1.1.1.ebuild,v 1.1 2010/01/26 20:54:11 weaver Exp $

EAPI="2"

DESCRIPTION="Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler"
HOMEPAGE="http://www.bcgsc.ca/platform/bioinfo/software/abyss"
SRC_URI="http://www.bcgsc.ca/downloads/abyss/${P}.tar.gz"

LICENSE="abyss"
SLOT="0"
IUSE="+mpi"
KEYWORDS="~amd64 ~x86"

DEPEND="dev-cpp/sparsehash
	mpi? ( virtual/mpi )"
RDEPEND="${DEPEND}"

# todo: --enable-maxk=N configure option
# todo: fix automagic mpi toggling

src_install() {
	einstall || die
}