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* sci-biology/primer3: Drop oldJustin Lecher2012-12-171-5/+11
| | | | (Portage version: 2.2.0_alpha148/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/primer3: Drop oldJustin Lecher2012-12-173-96/+5
| | | | (Portage version: 2.2.0_alpha148/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* Stable for ppc, wrt bug #446992Agostino Sarubbo2012-12-161-2/+2
| | | | (Portage version: 2.1.11.31/cvs/Linux ppc64, unsigned Manifest commit)
* Stable for ppc, wrt bug #446992Agostino Sarubbo2012-12-162-3/+6
| | | | (Portage version: 2.1.11.31/cvs/Linux ppc64, unsigned Manifest commit)
* Stable for x86, wrt bug #446992Agostino Sarubbo2012-12-161-2/+2
| | | | (Portage version: 2.1.11.31/cvs/Linux x86_64, unsigned Manifest commit)
* Stable for x86, wrt bug #446992Agostino Sarubbo2012-12-162-3/+6
| | | | (Portage version: 2.1.11.31/cvs/Linux x86_64, unsigned Manifest commit)
* Update LICENSE, HPND according to LICENSE file.Ulrich Müller2012-12-141-14/+24
| | | | (Portage version: 2.1.11.37/cvs/Linux x86_64, signed Manifest commit with key E7BE08CA7DC6EA25)
* Update LICENSE, HPND according to LICENSE file.Ulrich Müller2012-12-144-9/+13
| | | | (Portage version: 2.1.11.37/cvs/Linux x86_64, signed Manifest commit with key E7BE08CA7DC6EA25)
* Fix LICENSE, MIT (Expat) according to COPYING file.Ulrich Müller2012-12-141-8/+18
| | | | (Portage version: 2.1.11.37/cvs/Linux x86_64, signed Manifest commit with key E7BE08CA7DC6EA25)
* Fix LICENSE, MIT (Expat) according to COPYING file.Ulrich Müller2012-12-144-7/+11
| | | | (Portage version: 2.1.11.37/cvs/Linux x86_64, signed Manifest commit with key E7BE08CA7DC6EA25)
* Stable for amd64, wrt bug #446992Agostino Sarubbo2012-12-121-12/+2
| | | | (Portage version: 2.1.11.31/cvs/Linux x86_64, unsigned Manifest commit)
* Stable for amd64, wrt bug #446992Agostino Sarubbo2012-12-122-4/+6
| | | | (Portage version: 2.1.11.31/cvs/Linux x86_64, unsigned Manifest commit)
* sci-biology/primer3: Fix buildsystem patch to respect RANLIB, #447026Justin Lecher2012-12-121-6/+6
| | | | (Portage version: 2.2.0_alpha147/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/primer3: Fix buildsystem patch to respect RANLIB, #447026Justin Lecher2012-12-122-4/+17
| | | | (Portage version: 2.2.0_alpha147/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/primer3: Fix testJustin Lecher2012-12-121-7/+7
| | | | (Portage version: 2.2.0_alpha148/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/primer3: Fix testJustin Lecher2012-12-124-15/+19
| | | | (Portage version: 2.2.0_alpha148/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/primer3: Version Bump, #446982; cleaned oldJustin Lecher2012-12-121-7/+7
| | | | (Portage version: 2.2.0_alpha148/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/primer3: Version Bump, #446982; cleaned oldJustin Lecher2012-12-124-42/+191
| | | | (Portage version: 2.2.0_alpha148/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/t-coffee: Version BumpJustin Lecher2012-12-111-13/+16
| | | | (Portage version: 2.2.0_alpha147/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/t-coffee: Version BumpJustin Lecher2012-12-115-8/+91
| | | | (Portage version: 2.2.0_alpha147/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/fasta: Drop hardwired icc supportJustin Lecher2012-12-101-9/+9
| | | | (Portage version: 2.2.0_alpha144/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/fasta: Drop hardwired icc supportJustin Lecher2012-12-103-30/+18
| | | | (Portage version: 2.2.0_alpha144/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* Add ~ppc, wrt bug #432368Agostino Sarubbo2012-12-101-13/+2
| | | | (Portage version: 2.1.11.31/cvs/Linux ppc64, unsigned Manifest commit)
* Add ~ppc, wrt bug #432368Agostino Sarubbo2012-12-102-4/+6
| | | | (Portage version: 2.1.11.31/cvs/Linux ppc64, unsigned Manifest commit)
* Add ~ppc, wrt bug #432368Agostino Sarubbo2012-12-101-17/+5
| | | | (Portage version: 2.1.11.31/cvs/Linux ppc64, unsigned Manifest commit)
* Add ~ppc, wrt bug #432368Agostino Sarubbo2012-12-102-6/+8
| | | | (Portage version: 2.1.11.31/cvs/Linux ppc64, unsigned Manifest commit)
* sci-biology/qrna: Drop oldJustin Lecher2012-12-061-5/+4
| | | | (Portage version: 2.2.0_alpha144/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/qrna: Drop oldJustin Lecher2012-12-062-56/+4
| | | | (Portage version: 2.2.0_alpha144/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* x86 stable wrt bug #441020Paweł Hajdan2012-12-061-2/+12
| | | | (Portage version: 2.1.11.31/cvs/Linux i686, signed Manifest commit with key 30427902)
* x86 stable wrt bug #441020Paweł Hajdan2012-12-062-3/+6
| | | | (Portage version: 2.1.11.31/cvs/Linux i686, signed Manifest commit with key 30427902)
* sci-biology/emboss: Fix compilation problem with toplplot, #391669, thanks ↵Justin Lecher2012-11-191-18/+20
| | | | | | Juergen Rose for the patch (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/emboss: Fix compilation problem with toplplot, #391669, thanks ↵Justin Lecher2012-11-193-1/+237
| | | | | | Juergen Rose for the patch (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/allpaths: Block sci-biology/allpathslg due to file collision, ↵Justin Lecher2012-11-191-7/+7
| | | | | | #443740 (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/allpaths: Block sci-biology/allpathslg due to file collision, ↵Justin Lecher2012-11-194-8/+17
| | | | | | #443740 (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/allpathslg: Block sci-biology/allpaths due to file collision, ↵Justin Lecher2012-11-191-9/+8
| | | | | | #443740 (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/allpathslg: Block sci-biology/allpaths due to file collision, ↵Justin Lecher2012-11-194-11/+18
| | | | | | #443740 (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* x86 stable, see bug 328437Andreas Schuerch2012-11-131-2/+12
| | | | (Portage version: 2.1.11.9/cvs/Linux i686, signed Manifest commit with key C1DE54B2)
* x86 stable, see bug 328437Andreas Schuerch2012-11-132-3/+7
| | | | (Portage version: 2.1.11.9/cvs/Linux i686)
* Stable for amd64, wrt bug #328437Agostino Sarubbo2012-11-111-12/+2
| | | | (Portage version: 2.1.11.31/cvs/Linux x86_64, unsigned Manifest commit)
* Stable for amd64, wrt bug #328437Agostino Sarubbo2012-11-112-3/+6
| | | | (Portage version: 2.1.11.31/cvs/Linux x86_64, unsigned Manifest commit)
* Stable for amd64, wrt bug #441020Agostino Sarubbo2012-11-101-12/+2
| | | | (Portage version: 2.1.11.31/cvs/Linux x86_64, unsigned Manifest commit)
* Stable for amd64, wrt bug #441020Agostino Sarubbo2012-11-102-3/+6
| | | | (Portage version: 2.1.11.31/cvs/Linux x86_64, unsigned Manifest commit)
* sci-biology/wgs-assembler: Respect LDFLAGS, #331935; fix linking with gold; ↵Justin Lecher2012-11-101-13/+15
| | | | | | handle static-libs (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/wgs-assembler: Respect LDFLAGS, #331935; fix linking with gold; ↵Justin Lecher2012-11-106-9/+320
| | | | | | handle static-libs (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* Update ChangeLogJustin Lecher2012-11-101-4/+4
| | | | (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* Update ChangeLogJustin Lecher2012-11-101-2/+2
| | | | (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/cufflinks: Drop hard version dep for boost, #440630, and fix ↵Justin Lecher2012-11-101-9/+8
| | | | | | compatibility with version 1.5*; Fix gcc-4.7 problems (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/cufflinks: Drop hard version dep for boost, #440630, and fix ↵Justin Lecher2012-11-105-19/+1404
| | | | | | compatibility with version 1.5*; Fix gcc-4.7 problems (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/express: Keyworded for ~x86; drop needless version restriction ↵Justin Lecher2012-11-091-9/+5
| | | | | | of boost, #440634 (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/express: Keyworded for ~x86; drop needless version restriction ↵Justin Lecher2012-11-092-7/+12
| | | | | | of boost, #440634 (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)