diff options
Diffstat (limited to 'sci-chemistry')
| -rw-r--r-- | sci-chemistry/tinker/ChangeLog | 8 | ||||
| -rw-r--r-- | sci-chemistry/tinker/files/5.1.09-Makefile.patch | 13 | ||||
| -rw-r--r-- | sci-chemistry/tinker/tinker-5.1.09.ebuild (renamed from sci-chemistry/tinker/tinker-5.1.08.ebuild) | 17 |
3 files changed, 33 insertions, 5 deletions
diff --git a/sci-chemistry/tinker/ChangeLog b/sci-chemistry/tinker/ChangeLog index 53be824fad40..cfc2350b9fe3 100644 --- a/sci-chemistry/tinker/ChangeLog +++ b/sci-chemistry/tinker/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for sci-chemistry/tinker # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tinker/ChangeLog,v 1.24 2010/10/03 08:31:34 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tinker/ChangeLog,v 1.25 2010/10/03 10:49:15 jlec Exp $ + +*tinker-5.1.09 (03 Oct 2010) + + 03 Oct 2010; Justin Lecher <jlec@gentoo.org> +files/5.1.09-Makefile.patch, + -tinker-5.1.08.ebuild, +tinker-5.1.09.ebuild: + Version bump, fixes 335197 & 337074 03 Oct 2010; Justin Lecher <jlec@gentoo.org> tinker-5.1.08.ebuild, tinker-6.0.ebuild: diff --git a/sci-chemistry/tinker/files/5.1.09-Makefile.patch b/sci-chemistry/tinker/files/5.1.09-Makefile.patch new file mode 100644 index 000000000000..68a095add706 --- /dev/null +++ b/sci-chemistry/tinker/files/5.1.09-Makefile.patch @@ -0,0 +1,13 @@ +diff --git a/make/Makefile b/make/Makefile +index 221ab45..7634474 100644 +--- a/make/Makefile ++++ b/make/Makefile +@@ -607,7 +607,7 @@ clean: + listing: + cat *.i *.f > tinker.txt + +-rename: ++rename: ${EXEFILES} + mv alchemy.x $(BINDIR)/alchemy + mv analyze.x $(BINDIR)/analyze + mv anneal.x $(BINDIR)/anneal diff --git a/sci-chemistry/tinker/tinker-5.1.08.ebuild b/sci-chemistry/tinker/tinker-5.1.09.ebuild index 14fd42a76b65..f3796752ac48 100644 --- a/sci-chemistry/tinker/tinker-5.1.08.ebuild +++ b/sci-chemistry/tinker/tinker-5.1.09.ebuild @@ -1,11 +1,11 @@ # Copyright 1999-2010 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tinker/tinker-5.1.08.ebuild,v 1.3 2010/10/03 08:31:34 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tinker/tinker-5.1.09.ebuild,v 1.1 2010/10/03 10:49:16 jlec Exp $ EAPI="2" FORTRAN="gfortran ifc" -inherit fortran java-pkg-opt-2 toolchain-funcs +inherit eutils fortran java-pkg-opt-2 toolchain-funcs DESCRIPTION="Molecular modeling package that includes force fields, such as AMBER and CHARMM" HOMEPAGE="http://dasher.wustl.edu/tinker/" @@ -30,12 +30,18 @@ pkg_setup() { fortran_pkg_setup java-pkg-opt-2_pkg_setup } + +src_prepare() { + cd .. + epatch "${FILESDIR}"/${PV}-Makefile.patch +} + src_compile() { local javalib= for i in $(java-config -g LDPATH | sed 's|:| |g'); do [[ -f ${i}/libjvm.so ]] && javalib=${i} done - emake \ + emake -e \ -f ../make/Makefile \ F77="${FORTRANC}" \ CC="$(tc-getCC) -c" \ @@ -44,13 +50,15 @@ src_compile() { LINKFLAGS="${LDFLAGS} -Wl,-rpath ${javalib}" \ INCLUDEDIR="$(java-pkg_get-jni-cflags) -I${EPREFIX}/usr/include" \ LIBS="$(pkg-config --libs apbs) -lmaloc -L${javalib} -ljvm" \ - || die + all || die mkdir "${S}"/../bin || die + emake \ -f ../make/Makefile \ BINDIR="${S}"/../bin \ rename || die } + src_test() { cd "${WORKDIR}"/tinker/test/ for test in *.run; do @@ -67,6 +75,7 @@ src_install() { dodoc \ "${WORKDIR}"/${PN}/doc/{*.txt,announce/release-*,*.pdf,0README} || die + if use examples; then insinto /usr/share/${P} doins -r "${WORKDIR}"/${PN}/example || die |