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Diffstat (limited to 'sci-chemistry/cns/cns-1.2-r1.ebuild')
| -rw-r--r-- | sci-chemistry/cns/cns-1.2-r1.ebuild | 147 |
1 files changed, 147 insertions, 0 deletions
diff --git a/sci-chemistry/cns/cns-1.2-r1.ebuild b/sci-chemistry/cns/cns-1.2-r1.ebuild new file mode 100644 index 000000000000..e7884ca2f74c --- /dev/null +++ b/sci-chemistry/cns/cns-1.2-r1.ebuild @@ -0,0 +1,147 @@ +# Copyright 1999-2007 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/cns/cns-1.2-r1.ebuild,v 1.1 2007/12/07 08:58:57 dberkholz Exp $ + +inherit eutils fortran toolchain-funcs + +MY_PN="${PN}_solve" +MY_P="${MY_PN}_${PV}" + +DESCRIPTION="Crystallography and NMR System" +HOMEPAGE="http://cns.csb.yale.edu/" +SRC_URI="${MY_P}_all.tar.gz" +RESTRICT="fetch" +LICENSE="cns" +SLOT="0" +KEYWORDS="~ppc ~x86" +IUSE="" +RDEPEND="|| ( app-shells/tcsh app-shells/csh ) + !app-text/dos2unix" +DEPEND="${RDEPEND}" +S="${WORKDIR}/${MY_P}" + +FORTRAN="g77 gfortran" + +pkg_nofetch() { + einfo "Fill out the form at http://cns.csb.yale.edu/cns_request/" + einfo "and place these files:" + einfo "${A}" + einfo "in ${DISTDIR}." +} + +src_unpack() { + unpack ${A} + cd "${S}" + + # The length of time must be at least 10, not 9 + # http://gcc.gnu.org/ml/fortran/2006-02/msg00198.html + epatch "${FILESDIR}"/1.1-time-length-10.patch + + # Set up location for the build directory + # Uses obsolete `sort` syntax, so we set _POSIX2_VERSION + sed -i \ + -e "s:_CNSsolve_location_:${S}:g" \ + -e "17 s:\(.*\):\1\nsetenv _POSIX2_VERSION 199209:g" \ + "${S}"/cns_solve_env + sed -i \ + -e "s:_CNSsolve_location_:${S}:g" \ + -e "17 s:\(.*\):\1\nexport _POSIX2_VERSION; _POSIX2_VERSION=199209:g" \ + "${S}"/.cns_solve_env_sh +} + +src_compile() { + local GLOBALS + local MALIGN= + if [[ ${FORTRANC} = g77 ]]; then + GLOBALS="-fno-globals" + MALIGN='\$(CNS_MALIGN_I86)' + fi + + # make install really means build, since it's expected to be used in-place + emake \ + CC="$(tc-getCC)" \ + F77="${FORTRANC}" \ + LD="${FORTRANC}" \ + CCFLAGS="${CFLAGS} -DCNS_ARCH_TYPE_\$(CNS_ARCH_TYPE) \$(EXT_CCFLAGS)" \ + F77OPT="${FFLAGS:- -O2} ${MALIGN}" \ + F77STD="${GLOBALS}" \ + g77install \ + || die "emake failed" +} + +src_test() { + # We need to force on g77 manually, because we can't get aliases working + # when we source in a -c + einfo "Running tests ..." + sh -c \ + "export CNS_G77=ON; source .cns_solve_env_sh; make run_tests" \ + || die "tests failed" + einfo "Displaying test results ..." + cat "${S}"/*_g77/test/*.diff-test +} + +src_install() { + # Install to locations resembling FHS + sed -i \ + -e "s:${S}:usr:g" \ + -e "s:^\(setenv CNS_SOLVE.*\):\1\nsetenv CNS_ROOT usr:g" \ + -e "s:^\(setenv CNS_SOLVE.*\):\1\nsetenv CNS_DATA \$CNS_ROOT/share/data:g" \ + -e "s:^\(setenv CNS_SOLVE.*\):\1\nsetenv CNS_DOC \$CNS_ROOT/share/doc/${PF}:g" \ + -e "s:CNS_MODULE \$CNS_SOLVE/modules:CNS_MODULE \$CNS_DATA/modules:g" \ + -e "s:\$CNS_LIB:\$CNS_DATA:g" \ + -e "s:CNS_HELPLIB \$CNS_SOLVE/helplib:CNS_HELPLIB \$CNS_DATA/helplib:g" \ + -e "s:\$CNS_SOLVE/bin/cns_info:\$CNS_DATA/bin/cns_info:g" \ + "${S}"/cns_solve_env + # I don't entirely understand why the sh version requires a leading / + # for CNS_SOLVE and CNS_ROOT, but it does + sed -i \ + -e "s:${S}:/usr:g" \ + -e "s:^\(^[[:space:]]*CNS_SOLVE=.*\):\1\nexport CNS_ROOT=/usr:g" \ + -e "s:^\(^[[:space:]]*CNS_SOLVE=.*\):\1\nexport CNS_DATA=\$CNS_ROOT/share/data:g" \ + -e "s:^\(^[[:space:]]*CNS_SOLVE=.*\):\1\nexport CNS_DOC=\$CNS_ROOT/share/doc/${PF}:g" \ + -e "s:CNS_MODULE=\$CNS_SOLVE/modules:CNS_MODULE=\$CNS_DATA/modules:g" \ + -e "s:\$CNS_LIB:\$CNS_DATA:g" \ + -e "s:CNS_HELPLIB=\$CNS_SOLVE/helplib:CNS_HELPLIB=\$CNS_DATA/helplib:g" \ + -e "s:\$CNS_SOLVE/bin/cns_info:\$CNS_DATA/bin/cns_info:g" \ + "${S}"/.cns_solve_env_sh + + # Get rid of setup stuff we don't need in the installed script + sed -i \ + -e "83,$ d" \ + -e "37,46 d" \ + "${S}"/cns_solve_env + sed -i \ + -e "84,$ d" \ + -e "39,50 d" \ + "${S}"/.cns_solve_env_sh + + newbin "${S}"/*_g77/bin/cns_solve* cns_solve \ + || die "install cns_solve failed" + + # Can be run by either cns_solve or cns + dosym cns_solve /usr/bin/cns + + # Don't want to install this + rm -f "${S}"/*_g77/utils/Makefile + + dobin "${S}"/*_g77/utils/* || die "install utils failed" + + sed -i \ + -e "s:\$CNS_SOLVE/doc/:\$CNS_SOLVE/share/doc/${PF}/:g" \ + "${S}"/bin/cns_web + + dobin "${S}"/bin/cns_{edit,header,transfer,web} || die "install bin failed" + + insinto /usr/share/cns + doins -r "${S}"/libraries "${S}"/modules "${S}"/helplib + doins "${S}"/bin/cns_info + + insinto /etc/profile.d + newins "${S}"/cns_solve_env cns_solve_env.csh + newins "${S}"/.cns_solve_env_sh cns_solve_env.sh + + dohtml \ + -A iq,cgi,csh,cv,def,fm,gif,hkl,inp,jpeg,lib,link,list,mask,mtf,param,pdb,pdf,pl,ps,sc,sca,sdb,seq,tbl,top \ + -f all_cns_info_template,omac,def \ + -r doc/html/* +} |