diff options
Diffstat (limited to 'sci-chemistry/ccpn/ccpn-2.1.5_p111017.ebuild')
| -rw-r--r-- | sci-chemistry/ccpn/ccpn-2.1.5_p111017.ebuild | 214 |
1 files changed, 0 insertions, 214 deletions
diff --git a/sci-chemistry/ccpn/ccpn-2.1.5_p111017.ebuild b/sci-chemistry/ccpn/ccpn-2.1.5_p111017.ebuild deleted file mode 100644 index 6d841300e841..000000000000 --- a/sci-chemistry/ccpn/ccpn-2.1.5_p111017.ebuild +++ /dev/null @@ -1,214 +0,0 @@ -# Copyright 1999-2011 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.1.5_p111017.ebuild,v 1.2 2011/10/19 07:25:58 jlec Exp $ - -EAPI="3" - -PYTHON_DEPEND="2:2.5" -PYTHON_USE_WITH="ssl tk" - -inherit eutils portability python toolchain-funcs versionator - -PATCHSET="${PV##*_p}" -MY_PN="${PN}mr" -MY_PV="$(replace_version_separator 3 _ ${PV%%_p*})" -MY_MAJOR="$(get_version_component_range 1-3)" - -DESCRIPTION="The Collaborative Computing Project for NMR" -HOMEPAGE="http://www.ccpn.ac.uk/ccpn" -SRC_URI="http://www.bio.cam.ac.uk/ccpn/download/${MY_PN}/analysis${MY_PV}.tar.gz" - [[ -n ${PATCHSET} ]] && SRC_URI="${SRC_URI} http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz" - -SLOT="0" -LICENSE="|| ( CCPN LGPL-2.1 )" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="extendnmr +opengl" - -RDEPEND=" - dev-lang/tk[threads] - >=dev-python/numpy-1.4 - >=dev-tcltk/tix-8.4.3 - =sci-libs/ccpn-data-"${MY_MAJOR}"* - >=sci-libs/ccpn-data-2.1.5_p111011 - sci-biology/psipred - x11-libs/libXext - x11-libs/libX11 - opengl? ( - media-libs/freeglut - dev-python/pyglet )" -# We need to fix this -# sci-chemistry/mdd -DEPEND="${RDEPEND}" -PDEPEND=" - extendnmr? ( - <=sci-chemistry/aria-2.3.2 - sci-chemistry/prodecomp )" - -RESTRICT="mirror" - -S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2 ${PV}) - -pkg_setup() { - python_set_active_version 2 -} - -src_prepare() { - [[ -n ${PATCHSET} ]] && \ - epatch "${WORKDIR}"/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch - - epatch "${FILESDIR}"/${MY_PV}-parallel.patch - - sed \ - -e "/PSIPRED_DIR/s:'data':'share/psipred/data':g" \ - -e "s:weights_s:weights:g" \ - -i python/ccpnmr/analysis/wrappers/Psipred.py || die - - local tk_ver - local myconf - - tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)" - - if use opengl; then - GLUT_NEED_INIT="-DNEED_GLUT_INIT" - IGNORE_GL_FLAG="" - GL_FLAG="-DUSE_GL_TRUE" - GL_DIR="${EPREFIX}/usr" - GL_LIB="-lglut -lGLU -lGL" - GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include" - GL_LIB_FLAGS="-L\$(GL_DIR)/$(get_libdir)" - - else - IGNORE_GL_FLAG="-DIGNORE_GL" - GL_FLAG="-DUSE_GL_FALSE" - fi - - GLUT_NOT_IN_GL="" - GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)" - - rm -rf data model doc license || die - - sed \ - -e "s|/usr|${EPREFIX}/usr|g" \ - -e "s|^\(CC =\).*|\1 $(tc-getCC)|g" \ - -e "s|^\(OPT_FLAG =\).*|\1 ${CFLAGS}|g" \ - -e "s|^\(LINK_FLAGS =.*\)|\1 ${LDFLAGS}|g" \ - -e "s|^\(IGNORE_GL_FLAG =\).*|\1 ${IGNORE_GL_FLAG}|g" \ - -e "s|^\(GL_FLAG =\).*|\1 ${GL_FLAG}|g" \ - -e "s|^\(GL_DIR =\).*|\1 ${GL_DIR}|g" \ - -e "s|^\(GL_LIB =\).*|\1 ${GL_LIB}|g" \ - -e "s|^\(GL_LIB_FLAGS =\).*|\1 ${GL_LIB_FLAGS}|g" \ - -e "s|^\(GL_INCLUDE_FLAGS =\).*|\1 ${GL_INCLUDE_FLAGS}|g" \ - -e "s|^\(GLUT_NEED_INIT =\).*|\1 ${GLUT_NEED_INIT}|g" \ - -e "s|^\(GLUT_NOT_IN_GL =\).*|\1|g" \ - -e "s|^\(X11_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \ - -e "s|^\(TCL_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \ - -e "s|^\(TK_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \ - -e "s|^\(PYTHON_INCLUDE_FLAGS =\).*|\1 -I${EPREFIX}/$(python_get_includedir)|g" \ - -e "s|^\(PYTHON_LIB =\).*|\1 $(python_get_library -l)|g" \ - c/environment_default.txt > c/environment.txt -} - -src_compile() { - emake -C c all links || die -} - -src_install() { - local libdir - local tkver - local _wrapper - - find . -name "*.pyc" -type d -delete - - libdir=$(get_libdir) - tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2) - - _wrapper="analysis dangle dataShifter depositionFileImporter eci formatConverter pipe2azara" - use extendnmr && _wrapper="${_wrapper} extendNmr" - for wrapper in ${_wrapper}; do - sed \ - -e "s|gentoo_sitedir|${EPREFIX}$(python_get_sitedir)|g" \ - -e "s|gentoolibdir|${EPREFIX}/usr/${libdir}|g" \ - -e "s|gentootk|${EPREFIX}/usr/${libdir}/tk${tkver}|g" \ - -e "s|gentootcl|${EPREFIX}/usr/${libdir}/tclk${tkver}|g" \ - -e "s|gentoopython|${EPREFIX}/usr/bin/python|g" \ - -e "s|gentoousr|${EPREFIX}/usr|g" \ - -e "s|//|/|g" \ - "${FILESDIR}"/${wrapper} > "${T}"/${wrapper} || die "Fail fix ${wrapper}" - dobin "${T}"/${wrapper} || die "Failed to install ${wrapper}" - done - - local in_path - local files - local pydocs - - pydocs="$(find python -name doc -type d)" - rm -rf ${pydocs} || die - - in_path=$(python_get_sitedir)/${PN} - - for i in python/memops/format/compatibility/{Converters,part2/Converters2}.py; do - sed \ - -e 's|#from __future__|from __future__|g' \ - -i ${i} || die - done - - insinto ${in_path} - - dodir ${in_path}/c - - ebegin "Installing main files" - doins -r python || die "main files installation failed" - eend - - einfo "Adjusting permissions" - - files=" - cambridge/c/BayesPeakSeparator.so - ccp/c/StructUtil.so - ccp/c/StructStructure.so - ccp/c/StructBond.so - ccp/c/StructAtom.so - ccpnmr/c/DyAtomCoord.so - ccpnmr/c/DyDistConstraint.so - ccpnmr/c/DyDistForce.so - ccpnmr/c/AtomCoordList.so - ccpnmr/c/DyAtomCoordList.so - ccpnmr/c/ContourStyle.so - ccpnmr/c/ContourLevels.so - ccpnmr/c/SliceFile.so - ccpnmr/c/PeakCluster.so - ccpnmr/c/Dynamics.so - ccpnmr/c/Bacus.so - ccpnmr/c/Midge.so - ccpnmr/c/DyDistConstraintList.so - ccpnmr/c/WinPeakList.so - ccpnmr/c/PeakList.so - ccpnmr/c/DistConstraint.so - ccpnmr/c/CloudUtil.so - ccpnmr/c/DistForce.so - ccpnmr/c/DistConstraintList.so - ccpnmr/c/AtomCoord.so - ccpnmr/c/DyDynamics.so - ccpnmr/c/ContourFile.so - memops/c/ShapeFile.so - memops/c/BlockFile.so - memops/c/PdfHandler.so - memops/c/MemCache.so - memops/c/FitMethod.so - memops/c/PsHandler.so - memops/c/GlHandler.so - memops/c/StoreFile.so - memops/c/StoreHandler.so - memops/c/TkHandler.so" - for FILE in ${files}; do - fperms 755 ${in_path}/python/${FILE} - done -} - -pkg_postinst() { - python_mod_optimize ${PN} -} - -pkg_postrm() { - python_mod_cleanup ${PN} -} |