diff options
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/hmmer/ChangeLog | 8 | ||||
| -rw-r--r-- | sci-biology/hmmer/hmmer-3.0.ebuild (renamed from sci-biology/hmmer/hmmer-3.0_beta2.ebuild) | 32 |
2 files changed, 20 insertions, 20 deletions
diff --git a/sci-biology/hmmer/ChangeLog b/sci-biology/hmmer/ChangeLog index ce311350187d..ec041a29aa2c 100644 --- a/sci-biology/hmmer/ChangeLog +++ b/sci-biology/hmmer/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for sci-biology/hmmer # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/ChangeLog,v 1.27 2010/01/01 21:52:57 fauli Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/ChangeLog,v 1.28 2010/03/28 20:51:02 weaver Exp $ + +*hmmer-3.0 (28 Mar 2010) + + 28 Mar 2010; Andrey Kislyuk <weaver@gentoo.org> -hmmer-3.0_beta2.ebuild, + +hmmer-3.0.ebuild: + Version bump 01 Jan 2010; Christian Faulhammer <fauli@gentoo.org> hmmer-3.0_beta2.ebuild: diff --git a/sci-biology/hmmer/hmmer-3.0_beta2.ebuild b/sci-biology/hmmer/hmmer-3.0.ebuild index 099db57b0a7d..fa358d2c221e 100644 --- a/sci-biology/hmmer/hmmer-3.0_beta2.ebuild +++ b/sci-biology/hmmer/hmmer-3.0.ebuild @@ -1,44 +1,38 @@ # Copyright 1999-2010 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/hmmer-3.0_beta2.ebuild,v 1.2 2010/01/01 21:52:57 fauli Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/hmmer-3.0.ebuild,v 1.1 2010/03/28 20:51:02 weaver Exp $ EAPI="2" -MY_P="hmmer-3.0b2" - DESCRIPTION="Sequence analysis using profile hidden Markov models" HOMEPAGE="http://hmmer.janelia.org/" -SRC_URI="ftp://selab.janelia.org/pub/software/hmmer3/${MY_P}.tar.gz" +SRC_URI="ftp://selab.janelia.org/pub/software/hmmer3/${PV}/${P}.tar.gz" LICENSE="GPL-3" SLOT="0" -IUSE="sse mpi threads" # gsl +IUSE="+sse mpi +threads gsl" KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos" -# NB: compile failure with mpi, disabling temporarily -# gsl? ( sci-libs/gsl ) -# mpi? ( virtual/mpi ) -DEPEND="" +DEPEND="mpi? ( virtual/mpi ) + gsl? ( >=sci-libs/gsl-1.12 )" RDEPEND="${DEPEND}" -S="${WORKDIR}/${MY_P}" - src_configure() { econf $(use_enable sse) \ - $(use_enable threads) || die -# $(use_enable mpi) \ -# $(use_with gsl) || die -} - -src_compile() { - emake -j1 || die + $(use_enable mpi) \ + $(use_enable threads) \ + $(use_with gsl) || die } src_install() { - emake DESTDIR="${D}" install || die + einstall || die dolib src/libhmmer.a || die dolib easel/libeasel.a || die insinto /usr/share/${PN} doins -r tutorial || die dodoc RELEASE-NOTES Userguide.pdf } + +src_test() { + emake check || die +} |