diff options
Diffstat (limited to 'sci-biology/recon')
| -rw-r--r-- | sci-biology/recon/ChangeLog | 10 | ||||
| -rw-r--r-- | sci-biology/recon/metadata.xml | 9 | ||||
| -rw-r--r-- | sci-biology/recon/recon-1.06.ebuild | 37 |
3 files changed, 56 insertions, 0 deletions
diff --git a/sci-biology/recon/ChangeLog b/sci-biology/recon/ChangeLog new file mode 100644 index 000000000000..9eadd5462034 --- /dev/null +++ b/sci-biology/recon/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/recon +# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/recon/ChangeLog,v 1.1 2011/02/03 01:58:47 weaver Exp $ + +*recon-1.06 (03 Feb 2011) + + 03 Feb 2011; Andrey Kislyuk <weaver@gentoo.org> +recon-1.06.ebuild, + +metadata.xml: + New package, dependency of sci-biology/repeatmodeler. Ebuild written by me + diff --git a/sci-biology/recon/metadata.xml b/sci-biology/recon/metadata.xml new file mode 100644 index 000000000000..3302123e5718 --- /dev/null +++ b/sci-biology/recon/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer> + <email>weaver@gentoo.org</email> + <name>Andrey Kislyuk</name> + </maintainer> + <herd>sci-biology</herd> +</pkgmetadata> diff --git a/sci-biology/recon/recon-1.06.ebuild b/sci-biology/recon/recon-1.06.ebuild new file mode 100644 index 000000000000..2592816d1191 --- /dev/null +++ b/sci-biology/recon/recon-1.06.ebuild @@ -0,0 +1,37 @@ +# Copyright 1999-2011 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/recon/recon-1.06.ebuild,v 1.1 2011/02/03 01:58:47 weaver Exp $ + +EAPI="3" + +DESCRIPTION="Automated de novo identification of repeat families from genomic sequences" +HOMEPAGE="http://selab.janelia.org/recon.html + http://www.repeatmasker.org/RepeatModeler.html" +SRC_URI="http://www.repeatmasker.org/RECON${PV}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +IUSE="" +KEYWORDS="~amd64 ~x86" + +DEPEND="" +RDEPEND="${DEPEND}" + +S="${WORKDIR}/RECON${PV}" + +src_prepare() { + sed -i 's|$path = "";|$path = "/usr/libexec/'${PN}'";|' scripts/recon.pl || die +} + +src_compile() { + emake -C src || die +} + +src_install() { + dobin scripts/* || die + exeinto /usr/libexec/${PN} + doexe src/{edgeredef,eledef,eleredef,famdef,imagespread} || die + dodoc 00README + insinto /usr/share/${PN} + doins -r Demos +} |