New package, dependency of sci-biology/repeatmodeler. Ebuild written by me

(Portage version: 2.2_rc86/cvs/Linux x86_64)

3 files changed, 56 insertions, 0 deletions

diff --git a/sci-biology/recon/ChangeLog b/sci-biology/recon/ChangeLog
new file mode 100644
index 000000000000..9eadd5462034
--- /dev/null
+++ b/sci-biology/recon/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/recon
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/recon/ChangeLog,v 1.1 2011/02/03 01:58:47 weaver Exp $
+
+*recon-1.06 (03 Feb 2011)
+
+  03 Feb 2011; Andrey Kislyuk <weaver@gentoo.org> +recon-1.06.ebuild,
+  +metadata.xml:
+  New package, dependency of sci-biology/repeatmodeler. Ebuild written by me
+
diff --git a/sci-biology/recon/metadata.xml b/sci-biology/recon/metadata.xml
new file mode 100644
index 000000000000..3302123e5718
--- /dev/null
+++ b/sci-biology/recon/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer>
+		<email>weaver@gentoo.org</email>
+		<name>Andrey Kislyuk</name>
+	</maintainer>
+	<herd>sci-biology</herd>
+</pkgmetadata>
diff --git a/sci-biology/recon/recon-1.06.ebuild b/sci-biology/recon/recon-1.06.ebuild
new file mode 100644
index 000000000000..2592816d1191
--- /dev/null
+++ b/sci-biology/recon/recon-1.06.ebuild
@@ -0,0 +1,37 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/recon/recon-1.06.ebuild,v 1.1 2011/02/03 01:58:47 weaver Exp $
+
+EAPI="3"
+
+DESCRIPTION="Automated de novo identification of repeat families from genomic sequences"
+HOMEPAGE="http://selab.janelia.org/recon.html
+	http://www.repeatmasker.org/RepeatModeler.html"
+SRC_URI="http://www.repeatmasker.org/RECON${PV}.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+IUSE=""
+KEYWORDS="~amd64 ~x86"
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}/RECON${PV}"
+
+src_prepare() {
+	sed -i 's|$path = "";|$path = "/usr/libexec/'${PN}'";|' scripts/recon.pl || die
+}
+
+src_compile() {
+	emake -C src || die
+}
+
+src_install() {
+	dobin scripts/* || die
+	exeinto /usr/libexec/${PN}
+	doexe src/{edgeredef,eledef,eleredef,famdef,imagespread} || die
+	dodoc 00README
+	insinto /usr/share/${PN}
+	doins -r Demos
+}