diff options
Diffstat (limited to 'sci-biology/paml')
| -rw-r--r-- | sci-biology/paml/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/paml/paml-4.3a.ebuild | 48 |
2 files changed, 54 insertions, 1 deletions
diff --git a/sci-biology/paml/ChangeLog b/sci-biology/paml/ChangeLog index 3798dc8cfb96..dd135aa374e8 100644 --- a/sci-biology/paml/ChangeLog +++ b/sci-biology/paml/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/paml # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/ChangeLog,v 1.6 2009/07/21 08:44:44 weaver Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/ChangeLog,v 1.7 2009/11/13 15:36:55 weaver Exp $ + +*paml-4.3a (13 Nov 2009) + + 13 Nov 2009; Andrey Kislyuk <weaver@gentoo.org> +paml-4.3a.ebuild: + Version bump *paml-4.2b-r1 (21 Jul 2009) diff --git a/sci-biology/paml/paml-4.3a.ebuild b/sci-biology/paml/paml-4.3a.ebuild new file mode 100644 index 000000000000..fc0efd0b27bb --- /dev/null +++ b/sci-biology/paml/paml-4.3a.ebuild @@ -0,0 +1,48 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/paml-4.3a.ebuild,v 1.1 2009/11/13 15:36:55 weaver Exp $ + +EAPI="2" + +inherit toolchain-funcs + +MY_P="${PN}43" +DESCRIPTION="Phylogenetic Analysis by Maximum Likelihood" +HOMEPAGE="http://abacus.gene.ucl.ac.uk/software/paml.html" +SRC_URI="http://abacus.gene.ucl.ac.uk/software/${PN}${PV}.tar.gz" + +LICENSE="free-noncomm" +SLOT="0" +KEYWORDS="~x86 ~amd64" +IUSE="" + +RDEPEND="" +DEPEND="${RDEPEND}" + +S="${WORKDIR}/${MY_P}" + +src_prepare() { + sed -i 's/-static//' "${S}/src/Makefile.UNIX" || die +} + +src_compile() { + cd src + emake \ + -f Makefile.UNIX \ + CC="$(tc-getCC)" \ + CFLAGS="${CFLAGS}" \ + || die "make failed" +} + +src_install() { + pushd "${S}"/src + dobin baseml codeml basemlg mcmctree pamp evolver yn00 chi2 || die + popd + dodoc README.txt doc/* + insinto /usr/share/${PN}/control + doins *.ctl || die "Failed to install control files" + insinto /usr/share/${PN}/dat + doins stewart* *.dat dat/* || die "Failed to install data files" + insinto /usr/share/${PN} + doins -r examples/ || die "Failed to install examples" +} |