diff options
| -rw-r--r-- | sci-biology/biopython/ChangeLog | 9 | ||||
| -rw-r--r-- | sci-biology/biopython/biopython-1.59.ebuild | 55 |
2 files changed, 62 insertions, 2 deletions
diff --git a/sci-biology/biopython/ChangeLog b/sci-biology/biopython/ChangeLog index d8ebb4cc0485..2a44ae7bff76 100644 --- a/sci-biology/biopython/ChangeLog +++ b/sci-biology/biopython/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/biopython -# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.66 2011/12/26 05:51:16 weaver Exp $ +# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.67 2012/02/27 16:06:58 weaver Exp $ + +*biopython-1.59 (27 Feb 2012) + + 27 Feb 2012; Andrey Kislyuk <weaver@gentoo.org> +biopython-1.59.ebuild: + Version bump 26 Dec 2011; Andrey Kislyuk <weaver@gentoo.org> +biopython-1.58.ebuild: Version bump diff --git a/sci-biology/biopython/biopython-1.59.ebuild b/sci-biology/biopython/biopython-1.59.ebuild new file mode 100644 index 000000000000..1a4a7397c2ff --- /dev/null +++ b/sci-biology/biopython/biopython-1.59.ebuild @@ -0,0 +1,55 @@ +# Copyright 1999-2012 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.59.ebuild,v 1.1 2012/02/27 16:06:59 weaver Exp $ + +EAPI=3 +PYTHON_DEPEND="2" +SUPPORT_PYTHON_ABIS="1" +RESTRICT_PYTHON_ABIS="3.* *-jython" + +inherit distutils eutils + +DESCRIPTION="Python modules for computational molecular biology" +HOMEPAGE="http://www.biopython.org/ http://pypi.python.org/pypi/biopython/" +SRC_URI="http://www.biopython.org/DIST/${P}.tar.gz" + +LICENSE="as-is" +SLOT="0" +KEYWORDS="~amd64 ~ppc ~x86" +IUSE="mysql postgres" + +RDEPEND=" + dev-python/numpy + dev-python/reportlab + mysql? ( dev-python/mysql-python ) + postgres? ( dev-python/psycopg )" +DEPEND="${RDEPEND} + sys-devel/flex" + +PYTHON_CFLAGS=("2.* + -fno-strict-aliasing") + +DISTUTILS_USE_SEPARATE_SOURCE_DIRECTORIES="1" +DOCS="CONTRIB DEPRECATED NEWS README" +PYTHON_MODNAME="Bio BioSQL" + +src_prepare() { + distutils_src_prepare + epatch "${FILESDIR}/${PN}-1.51-flex.patch" +} + +src_test() { + testing() { + cd Tests + PYTHONPATH="$(ls -d ../build/lib.*)" "$(PYTHON)" run_tests.py + } + python_execute_function --nonfatal -s testing +} + +src_install() { + distutils_src_install + + insinto /usr/share/doc/${PF} + doins -r Doc/* || die "Installation of documentation failed" + insinto /usr/share/${PN} + cp -r --preserve=mode Scripts Tests "${ED}usr/share/${PN}" || die "Installation of shared files failed" +} |